Water-quality and ecosystem impacts of recreation in streams: Monitoring and management

There is limited published information on the impact of bathing on stream water quality and ecology, except on human pathogens and health. We investigated the relationships between environmental quality of streams and recreational activity at five sites in the Australian Wet Tropics. The streams normally had very low concentrations of nutrients and suspended solids (TSS), but concentrations fluctuated widely during spates, thereby causing difficulties in discriminating impacts. Daily bathing activity disturbed sediments causing an increase in TSS and turbidity, which greatly exceeded national guidelines for maintenance of aesthetic qualities. TSS returned to background levels overnight as bathing areas were flushed clean. Total nitrogen and phosphate concentrations also increased with bather numbers, and phosphate concentrations were directly proportional to bather density. Faecal coliform concentrations were elevated by bathers at one site. Ecological effects of bathers were equivocal and greater on algal than invertebrate assemblages. Water quality degradation, although transient, suggested that some sites were close to their carrying capacity for bathers. Our results show that water quality may vary with local conditions and that cost-effective monitoring and management require development of cause-effect models of water quality processes for each stream site

Enhancing whole-of-river conservation

We argue for improved conservation of freshwater ecosystems at catchment or eco-regional scales by explicit assignment of values to all river sections and wetlands, recognising current disturbance, and aiming for ‘no further harm’ to the commons. The need is indicated by the global deterioration of biodiversity and ecosystem services of rivers and wetlands, increasing demands on water and land resources, and climate change. Regional pressures include multiple jurisdictions, competing demands, piecemeal management, pollution and habitat impacts. Effective resource and conservation management needs to integrate multiple uses via governance of activities of stakeholders, recognising hydrogeomorphic, water quality and ecological properties of ecosystems. Complete ecological protection is impractical amidst water-resource and land-use development, but we suggest that all river reaches and wetlands be given a conservation rating based on habitat, biodiversity and connectivity values. We present a straightforward approach to spatial conservation rating of freshwaters, using hydrogeomorphic typology and assignment of conservation values on the basis of available information and expert elicitation. We illustrate the approach by using the large Burdekin River catchment in north-eastern Australia. This approach is complementary to more spatially focused conservation prioritisation and could greatly improve management for sustainability, reduce further decline in conservation values, and facilitate rehabilitation

Color pattern complexity in dwarf minke whales (Balaenoptera acutorostrata) of the northern Great Barrier Reef of Australia

Complex color patterning is a characteristic feature of dwarf minke whales (DMWs; Balaenoptera acutorostrata) which has been used to photographically identify (photo-ID) individuals and to research an aggregation on Australia's Great Barrier Reef (GBR). DMW color patterns have been described and applied in various studies, but a detailed and systematic analysis of their complexity is yet to be performed. Here, we applied a novel categorization tool to assess the variation, asymmetry, and association of several DMW color pattern elements, subelements, and their character states. Proportions, hierarchical clustering, and multiple correspondence analysis revealed a high level of asymmetric color pattern variation, with white markings dominant and associated on the right of the body. Our results will improve the citizen science driven photo-ID of this little-known cetacean as labor-intensive manual methods transition to more efficient automated approaches. Such advancement will be challenging, yet beneficial for broader research into the poorly understood areas of DMW life history, evolution, genetics, social structure, and feeding. This could also potentially allow investigation into the functional significance of their color patterns

On the relationship between attitudes and environmental behaviors of key Great Barrier Reef user groups

© 2018 by the author(s). Urgent action is required to address threats to ecosystems around the world. Coral reef ecosystems, like the Great Barrier Reef (GBR), are particularly vulnerable to human impacts such as coastal development, resource extraction, and climate change. Resource managers and policymakers along the GBR have consequently initiated a variety of programs to engage local stakeholders and promote conservation activities to protect the environment. However, little is known about how and why stakeholders feel connected to the GBR nor how this connection affects the proenvironmental behaviors they undertake. We present the results of 5891 surveys and show that the attitudes that residents, tourists, and tourism operators have about the GBR are closely tied to the behaviors and activities they take to protect the environment. Our findings suggest that the responsibility, pride, identity, and optimism that people associate with the GBR are significantly correlated to several proenvironmental behaviors, including recycling, participation in conservation groups, and certain climate change mitigation activities. Respondents who feel the strongest connection to the GBR take the most action to protect the environment. Tourism operators who strongly identify with the GBR take more action to protect the environment than those who do not. Encouraging individual identification with the GBR via targeted messages and engagement campaigns may assist not only in GBR conservation, but a wider sustainability movement as well. A better understanding of the individual attitudes and beliefs held by local stakeholders is a key first step toward effective communication to influence conservation activities

Jail fever (epidemic typhus) outbreak in Burundi.

We recently investigated a suspected outbreak of epidemic typhus in a jail in Burundi. We tested sera of nine patients by microimmunofluorescence for antibodies to Rickettsia prowazekii and Rickettsia typhi. We also amplified and sequenced from lice gene portions specific for two R. prowazekii proteins: the gene encoding for citrate synthase and the gene encoding for the rickettsial outer membrane protein. All patients exhibited antibodies specific for R. prowazekii. Specific gene sequences were amplified in two lice from one patient. The patients had typical clinical manifestations, and two died. Molecular techniques provided a convenient and reliable means of examining lice and confirming this outbreak. The jail-associated outbreak predates an extensive ongoing outbreak of louse-borne typhus in central eastern Africa after civil war and in refugee camps in Rwanda, Burundi (1), and Zaire

Individual minke whale recognition using deep learning convolutional neural networks

The only known predictable aggregation of dwarf minke whales (Balaenoptera acutorostrata subsp.) occurs in the Australian offshore waters of the northern Great Barrier Reef in May-August each year. The identification of individual whales is required for research on the whales’ population characteristics and for monitoring the potential impacts of tourism activities, including commercial swims with the whales. At present, it is not cost-effective for researchers to manually process and analyze the tens of thousands of underwater images collated after each observation/tourist season, and a large data base of historical non-identified imagery exists. This study reports the first proof of concept for recognizing individual dwarf minke whales using the Deep Learning Convolutional Neural Networks (CNN).The “off-the-shelf” Image net-trained VGG16 CNN was used as the feature-encoder of the perpixel sematic segmentation Automatic Minke Whale Recognizer (AMWR). The most frequently photographed whale in a sample of 76 individual whales (MW1020) was identified in 179 images out of the total 1320 images provided. Training and image augmentation procedures were developed to compensate for the small number of available images. The trained AMWR achieved 93% prediction accuracy on the testing subset of 36 positive/MW1020 and 228 negative/not-MW1020 images, where each negative image contained at least one of the other 75 whales. Furthermore on the test subset, AMWR achieved 74% precision, 80% recall, and 4% false-positive rate, making the presented approach comparable or better to other state-of-the-art individual animal recognition results

Strategies of exploitation of mammalian reservoirs by Bartonella species

Numerous mammal species, including domestic and wild animals such as ruminants, dogs, cats and rodents, as well as humans, serve as reservoir hosts for various Bartonella species. Some of those species that exploit non-human mammals as reservoir hosts have zoonotic potential. Our understanding of interactions between bartonellae and reservoir hosts has been greatly improved by the development of animal models for infection and the use of molecular tools allowing large scale mutagenesis of Bartonella species. By reviewing and combining the results of these and other approaches we can obtain a comprehensive insight into the molecular interactions that underlie the exploitation of reservoir hosts by Bartonella species, particularly the well-studied interactions with vascular endothelial cells and erythrocytes

Ecological fitness and strategies of adaptation of Bartonella species to their hosts and vectors

Bartonella spp. are facultative intracellular bacteria that cause characteristic hostrestricted hemotropic infections in mammals and are typically transmitted by blood-sucking arthropods. In the mammalian reservoir, these bacteria initially infect a yet unrecognized primary niche, which seeds organisms into the blood stream leading to the establishment of a long-lasting intra-erythrocytic bacteremia as the hall-mark of infection. Bacterial type IV secretion systems, which are supra-molecular transporters ancestrally related to bacterial conjugation systems, represent crucial pathogenicity factors that have contributed to a radial expansion of the Bartonella lineage in nature by facilitating adaptation to unique mammalian hosts. On the molecular level, the type IV secretion system VirB/VirD4 is known to translocate a cocktail of different effector proteins into host cells, which subvert multiple cellular functions to the benefit of the infecting pathogen. Furthermore, bacterial adhesins mediate a critical, early step in the pathogenesis of the bartonellae by binding to extracellular matrix components of host cells, which leads to firm bacterial adhesion to the cell surface as a prerequisite for the efficient translocation of type IV secretion effector proteins. The best-studied adhesins in bartonellae are the orthologous trimeric autotransporter adhesins, BadA in Bartonella henselae and the Vomp family in Bartonella quintana. Genetic diversity and strain variability also appear to enhance the ability of bartonellae to invade not only specific reservoir hosts, but also accidental hosts, as shown for B. henselae. Bartonellae have been identified in many different blood-sucking arthropods, in which they are typically found to cause extracellular infections of the mid-gut epithelium. Adaptation to specific vectors and reservoirs seems to be a common strategy of bartonellae for transmission and host diversity. However, knowledge regarding arthropod specificity/res