Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage

Metabolic activities in estuaries, especially these of large rivers, profoundly affect the downstream coastal biogeochemistry. Here, we unravel the impacts of large industrial port facilities, showing that elevated metabolic activity in the Hamburg port (Germany) increases total alkalinity (TA) and dissolved inorganic carbon (DIC) runoff to the North Sea. The imports of particulate inorganic carbon, particulate organic carbon, and particulate organic nitrogen (PIC, POC, and PON) from the upstream Elbe River can fuel up to 90 % of the TA generated in the entire estuary via calcium carbonate (CaCO3) dissolution. The remaining at least 10 % of TA generation can be attributed to anaerobic metabolic processes such as denitrification of remineralized PON or other pathways. The Elbe Estuary as a whole adds approximately 15 % to the overall DIC and TA runoff. Both the magnitude and partitioning among these processes appear to be sensitive to climatic and anthropogenic changes. Thus, with increased TA loads, the coastal ocean (in particular) would act as a stronger CO2 sink, resulting in changes to the overall coastal system's capacity to store CO2.</p

Abrupt emergence of a large pockmark field in the German Bight, southeastern North Sea

A series of multibeam bathymetry surveys revealed the emergence of a large pockmark field in the southeastern North Sea. Covering an area of around 915 km2, up to 1,200 pockmarks per square kilometer have been identified. The time of emergence can be confined to 3 months in autumn 2015, suggesting a very dynamic genesis. The gas source and the trigger for the simultaneous outbreak remain speculative. Subseafloor structures and high methane concentrations of up to 30 mmol/l in sediment pore water samples suggest a source of shallow biogenic methane from the decomposition of post-glacial deposits in a paleo river valley. Storm waves are suggested as the final trigger for the eruption of the gas. Due to the shallow water depths and energetic conditions at the presumed time of eruption, a large fraction of the released gas must have been emitted to the atmosphere. Conservative estimates amount to 5 kt of methane, equivalent to 67% of the annual release from the entire North Sea. These observations most probably describe a reoccurring phenomenon in shallow shelf seas, which may have been overlooked before because of the transient nature of shallow water bedforms and technology limitations of high resolution bathymetric mapping

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

Coastal sands filter and accumulate organic and inorganic materials from the terrestrial and marine environment, and thus provide a high diversity of microbial niches. Sands of temperate climate zones represent a temporally and spatially highly dynamic marine environment characterized by strong physical mixing and seasonal variation. Yet little is known about the temporal fluctuations of resident and rare members of bacterial communities in this environment. By combining community fingerprinting via pyrosequencing of ribosomal genes with the characterization of multiple environmental parameters, we disentangled the effects of seasonality, environmental heterogeneity, sediment depth and biogeochemical gradients on the fluctuations of bacterial communities of marine sands. Surprisingly, only 3–5% of all bacterial types of a given depth zone were present at all times, but 50–80% of them belonged to the most abundant types in the data set. About 60–70% of the bacterial types consisted of tag sequences occurring only once over a period of 1 year. Most members of the rare biosphere did not become abundant at any time or at any sediment depth, but varied significantly with environmental parameters associated with nutritional stress. Despite the large proportion and turnover of rare organisms, the overall community patterns were driven by deterministic relationships associated with seasonal fluctuations in key biogeochemical parameters related to primary productivity. The maintenance of major biogeochemical functions throughout the observation period suggests that the small proportion of resident bacterial types in sands perform the key biogeochemical processes, with minimal effects from the rare fraction of the communities

Characteristics of marine aggregates during the phytoplankton spring bloom in a temperate tidal basin

High abundance of aggregates has often been related to high primary production and phytoplankton blooms. Especially in shallow and turbid coastal regions the formation of aggregates and their sinking velocities also depends on the interaction between primary produced organic matter and lithogenic particles. Nine roller tank experiments were conducted during spring 2012 in the Northern Wadden Sea (Germany) to determine temporal dynamics of formation, composition, and sinking velocity of aggregates, in relation to the wax and wane of the phytoplankton bloom. Highest sinking velocities (June-July) did not coincide with highest SPM concentrations (January-March). After the diatom bloom almost 80% of SPM was rapidly settling in aggregates but only 10% rapidly settled during the subsequent Phaeocystis bloom. The results suggest interactive effects of particle size, specific density and the availability of organic and inorganic particulate matter. Our study underlines the importance of marine aggregates as carrier of organic matter and of lithogenic particles as ballasting material for sedimentation in tidal basins

Nitrate consumption in sediments of the German Bight (North Sea)

Denitrification on continental margins and in coastal sediments is a major sink of reactive N in the present nitrogen cycle and a major ecosystem service of eutrophied coastal waters. We analyzed the nitrate removal in surface sediments of the Elbe estuary, Wadden Sea, and adjacent German Bight (SE North Sea) during two seasons (spring and summer) along a eutrophication gradient ranging from a high riverine nitrate oncentrations at the Elbe Estuary to offshore areas with low nitrate concentrations. The gradient encompassed the full range of sediment types and organic carbon concentrations of the southern North Sea. Based on nitrate penetration depth and concentration gradient in the porewater we estimated benthic nitrate consumption rates assuming either diffusive transport in cohesive sediments or advective transport in permeable sediments. For the latter we derived a mechanistic model of porewater flow. During the peak nitrate discharge of the river Elbe in March, the highest rates of diffusive nitrate uptake were observed in muddy sediments (up to 2.8 mmol m−2 d−1). The highest advective uptake rate in that period was observed in permeable sediment and was tenfold higher (up to 32 mmol m−2 d−1). The intensity of both diffusive and advective nitrate consumption dropped with the nitrate availability and thus decreased from the Elbe estuary towards offshore stations, and were further decreased during late summer (minimum nitrate discharge) compared to late winter (maximum nitrate discharge). In summary, our rate measurements indicate that the permeable sediment accounts for up to 90% of the total benthic reactive nitrogen consumption in the study area due to the high efficiency of advective nitrate transport into permeable sediment. Extrapolating the averaged nitrate consumption of different sediment classes to the areas of Elbe Estuary, Wadden Sea and eastern German Bight amounts to an N-loss of 3.1 ∗ 106 mol N d−1 from impermeable, diffusion-controlled sediment, and 5.2 ∗ 107 mol N d−1 from permeable sediment with porewater advection

Unraveling the linkages among hydrodynamics, primary production, benthic nutrient fluxes and bioturbation in the southern North Sea

Benthic fluxes of dissolved nutrients and oxygen measured in the southern North Sea using ex situ incubation chambers indicate a prominent annual cycle characterized by low level from mid-autumn (Oct) to early spring (Mar) and enhanced values from mid-spring (Apr) to early autumn (Sep) with peak in late summer (late Aug/early Sep). The same cycle is also shown in the budget of total organic carbon (TOC) and macrobenthic biomass in surface sediments. The significant positive correlations between the benthic nutrient fluxes, oxygen, sedimentary TOC and macrobenthos suggest that their variation might respond to a common source, i.e. the primary production. However, the linkages between these quantities and pelagic primary production, which exhibits a dominant bloom in early spring (Mar/Apr) and a secondary bloom in early summer (Jun/Jul) in the study area, is not straightforward. We present a numerical study to unravel the complex linkages. A 3-D coupled hydrodynamic-biogeochemical model (ECOSMO) was used to provide benthic boundary conditions for a 1-D biogeochemical model in the sediment (TOCMAIM) that mechanistically resolves the interaction between macrobenthos and organic matter through bioturbation. Simulation results based on a satisfactory hindcast from 1948 to 2015 reveal that although the spring algal bloom normally starts in late winter (Feb) and peaks in early spring (Mar/Apr), deposition of labile OC to seafloor is limited in this period due to energetic hydrodynamic conditions. Sedimentation and accumulation of labile OC (originated from fresh planktonic detritus) in seafloor surface sediments are facilitated in summer when wind-waves become weak enough. This drives the blooming of macrobenthos, with peak of biomass in late summer (Aug). Bioturbation intensity, which is dependent upon macrobenthic biomass, community structure as well as local food resource, peaks also in later summer. Enhanced bioturbation and benthic metabolism result in an increased oxygen flux into sediments, promoting remineralization of OC and release of nutrients. The following period (late Sep/Oct) is characterized by low level of pelagic primary production in combination with enhanced wind-waves, which not only reduce the input of labile OC into sediments substantially but also remobilize surface material (sediments and OC) on a major part of the shallow coastal seafloor. Depletion of labile OC in the uppermost centimeters of sediments by a combined effect of erosion, macrobenthic uptake and downward mixing (through bioturbation) accounts for the rapid decline of benthic nutrient fluxes in Oct, which remain low through the stormy winter until the next spring

seagrass occupation (geotif, epsg:3035)

Proportion of the 17 years that a cell was occupied. These data cover Schleswig-Holstein