Programming DNA-Based Systems through Effective Molarity Enforced by Biomolecular Confinement

The fundamental concept of effective molarity is observed in a variety of biological processes, such as protein compartmentalization within organelles, membrane localization and signaling paths. To control molecular encountering and promote effective interactions, nature places biomolecules in specific sites inside the cell in order to generate a high, localized concentration different from the bulk concentration. Inspired by this mechanism, scientists have artificially recreated in the lab the same strategy to actuate and control artificial DNA-based functional systems. Here, it is discussed how harnessing effective molarity has led to the development of a number of proximity-induced strategies, with applications ranging from DNA-templated organic chemistry and catalysis, to biosensing and protein-supported DNA assembly

Proton cyclotron wave generation mechanisms upstream of Venus

[1] Long-term observations of proton cyclotron waves in the upstream region of Venus raise the question of under which general solar wind conditions these waves are generated and maintained. The waves are characterized by their occurrence at the local proton cyclotron frequency and left-hand polarization, both in the spacecraft frame. Magnetometer data of the Venus Express spacecraft for two Venus years of observations are analyzed before, during, and after the occurrence of these waves. The configuration of the upstream magnetic field and the solar wind velocity is investigated, to study if the waves are generated from a ring distribution of pickup ions in velocity space or from a parallel pickup ion beam, i.e., for quasi-parallel conditions of solar wind velocity and magnetic field when the solar wind motional electric field is weak. It is found that stable and mainly quasi-parallel magnetic field conditions for up to ∼20 min prior to wave observation are present, enabling sufficient ion pickup and wave growth to obtain observable waves in the magnetometer data. Persistent waves occur mainly under quasi-parallel conditions. This is in agreement with linear theory, which predicts efficient wave growth for instabilities driven by field-aligned planetary ion beams, already for low pickup ion density. The occurrence of highly coherent waves at 4 RV upstream toward the Sun implies that planetary neutral hydrogen is initially picked up at least 5 RV toward the Sun from a sufficiently dense Venus hydrogen exosphere.Fil: Delva, M.. Austrian Academy of Sciences; AustriaFil: Mazelle, C.. Universitá Paul Sabatier; FranciaFil: Bertucci, Cesar. Consejo Nacional de Investigaciónes Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Astronomía y Física del Espacio. - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Astronomía y Física del Espacio; ArgentinaFil: Volwerk, M.. Austrian Academy of Sciences; AustriaFil: Vörös, Z.. University of Innsbruck; AustriaFil: Zhang, T. L.. Austrian Academy of Sciences; Austri

Evaluation of operational parameters on the precipitation of endoglucanase and xylanase produced by solid state fermentation of Aspergillus niger

In order to develop cost effective processes for converting biomass into biofuels, it is essential to improve enzyme production yields, stability and specific activity. In this context, the aim of this work was to evaluate the concentration of two enzymes involved in the hydrolysis of biomass, endoglucanase and xylanase, through precipitation. Statistical experimental design was used to evaluate the influence of precipitant agent concentration (ammonium sulfate and ethanol), aging time, and temperature on enzyme activity recovery. Precipitant agent concentration and aging time showed a statistically significant effect at the 95% confidence level, on both enzyme activity recoveries. The recovery of endoglucanase with ammonium sulfate and ethanol reached values up to 65 and 61%, respectively. For xylanase, the recovery rates were lower, 27 and 25% with ammonium sulfate and ethanol, respectively. The results obtained allowed the selection of the variables relevant to improving enzyme activity recovery within operational conditions suitable for industrial applications.1726Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq

Penetrating particle ANalyzer (PAN)

PAN is a scientific instrument suitable for deep space and interplanetary missions. It can precisely measure and monitor the flux, composition, and direction of highly penetrating particles ($> \sim$100 MeV/nucleon) in deep space, over at least one full solar cycle (~11 years). The science program of PAN is multi- and cross-disciplinary, covering cosmic ray physics, solar physics, space weather and space travel. PAN will fill an observation gap of galactic cosmic rays in the GeV region, and provide precise information of the spectrum, composition and emission time of energetic particle originated from the Sun. The precise measurement and monitoring of the energetic particles is also a unique contribution to space weather studies. PAN will map the flux and composition of penetrating particles, which cannot be shielded effectively, precisely and continuously, providing valuable input for the assessment of the related health risk, and for the development of an adequate mitigation strategy. PAN has the potential to become a standard on-board instrument for deep space human travel. PAN is based on the proven detection principle of a magnetic spectrometer, but with novel layout and detection concept. It will adopt advanced particle detection technologies and industrial processes optimized for deep space application. The device will require limited mass (~20 kg) and power (~20 W) budget. Dipole magnet sectors built from high field permanent magnet Halbach arrays, instrumented in a modular fashion with high resolution silicon strip detectors, allow to reach an energy resolution better than 10\% for nuclei from H to Fe at 1 GeV/n

Cassini encounters with hot flow anomaly-like phenomena at Saturn's bow shock

Crossings of Saturn´s magnetopause made by the Cassini spacecraft on 12, 13 and 17 March 2006 are analysed. During this period Cassini´s trajectory was approximately parallel to the magnetopause boundary given by a model of the surface. Magnetic field and electron data are used to identify excursions into the magnetosheath bounded by crossings of the magnetopause current layer. Minimum variance analysis of the magnetic field vector measurements is used to determine the normal to the boundary for each crossing. The normals corresponding to the crossings oscillate about an average orientation that is consistent with the unperturbed normal predicted by the surface model. This reveals the presence of regular boundary waves with a direction of propagation found to be within 24° of Saturn´s rotational equator. Two categories of boundary wave are identified: the first with a period of the order of hours, and the second with a period of 45±9 min. Based on the propagation direction and a comparison of magnetospheric and magnetosheath magnetic fields, we conclude that both types of wave were driven by the Kelvin-Helmholtz instability. The observed boundary perturbations are consistent with a superposition of different types of surface wave activity.Fil: Masters, A.. Imperial College London; Reino UnidoFil: Arridge, C. S.. University College London; Estados UnidosFil: Dougherty, M. K.. Imperial College London; Reino UnidoFil: Bertucci, Cesar. Consejo Nacional de Investigaciónes Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Astronomía y Física del Espacio. - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Astronomía y Física del Espacio; ArgentinaFil: Billingham, L.. Imperial College London; Reino UnidoFil: Schwartz, S. J.. Imperial College London; Reino UnidoFil: Jackman, C. M.. Imperial College London; Reino UnidoFil: Bebesi, Z.. Research Institute for Particle and Nuclear Physics; HungríaFil: Coates, A. J.. University College London; Estados UnidosFil: Thomsen, M. F.. Los Alamos National Laboratory; Estados Unido

Supramolecular Nucleic Acid-Based Organosilica Nanoparticles Responsive to Physical and Biological Inputs

Organosilica nanoparticles that contain responsive organic building blocks as constitutive components of the silica network offer promising opportunities for the development of innovative drug formulations, biomolecule delivery, and diagnostic tools. However, the synthetic challenges required to introduce dynamic and multifunctional building blocks have hindered the realization of biomimicking nanoparticles. In this study, capitalizing on our previous research on responsive nucleic acid-based organosilica nanoparticles, we combine the supramolecular programmability of nucleic acid (NA) interactions with sol-gel chemistry. This approach allows us to create dynamic supramolecular bridging units of nucleic acids in a silica-based scaffold. Two peptide nucleic acid-based monoalkoxysilane derivatives, which self-assemble into a supramolecular bis-alkoxysilane through direct base pairing, were chosen as the noncovalent units inserted into the silica network. In addition, a bridging functional NA aptamer leads to the specific recognition of ATP molecules. In a one-step bottom-up approach, the resulting supramolecular building blocks can be used to prepare responsive organosilica nanoparticles. The supramolecular Watson-Crick-Franklin interactions of the organosilica nanoparticles result in a programmable response to external physical (i.e., temperature) and biological (i.e., DNA and ATP) inputs and thus pave the way for the rational design of multifunctional silica materials with application from drug delivery to theranostics

Indole derivative interacts with estrogen receptor beta and inhibits human ovarian cancer cell growth

Ovarian cancer remains the leading cause of mortality among gynecological tumors. Estrogen receptor beta (ERβ) expression has been suggested to act as a tumor suppressor in epithelial ovarian cancer by reducing both tumor growth and metastasis. ERβ expression abnormalities represent a critical step in the development and progression of ovarian cancer: for these reasons, its re‐expression by genetic engineering, as well as the use of targeted ERβ therapies, still constitute an important therapeutic approach. 3‐{[2‐chloro‐1‐(4‐chlorobenzyl)‐5‐methoxy‐6-methyl‐1H‐indol‐3‐yl]methylene}‐5‐hydroxy‐6‐methyl‐1,3‐dihydro‐2H‐indol‐2‐one, referred to here as compound 3, has been shown to have cytostatic as well cytotoxic effects on various hormone-dependent cancer cell lines. However, the mechanism of its anti‐carcinogenic activity is not well understood. Here, we offer a possible explanation of such an effect in the human ovarian cancer cell line IGROV1. Chromatin binding protein assay and liquid chromatography mass spectrometry were exploited to localize and quantify compound 3 in cells. Molecular docking was used to prove compound 3 binding to ERβ. Mass spectrometry‐based approaches were used to analyze histone post‐translational modifications. Finally, gene expression analyses revealed a set of genes regulated by the ERβ/3 complex, namely CCND1, MYC, CDKN2A, and ESR2, providing possible molecular mechanisms that underline the observed antiproliferative effects

Responsive Nucleic Acid-Based Organosilica Nanoparticles

The development of smart nanoparticles (NPs) that encode responsive features in the structural framework promises to extend the applications of NP-based drugs, vaccines, and diagnostic tools. New nanocarriers would ideally consist of a minimal number of biocompatible components and exhibit multiresponsive behavior to specific biomolecules, but progress is limited by the difficulty of synthesizing suitable building blocks. Through a nature-inspired approach that combines the programmability of nucleic acid interactions and sol-gel chemistry, we report the incorporation of synthetic nucleic acids and analogs, as constitutive components, into organosilica NPs. We prepared different nanomaterials containing single-stranded nucleic acids that are covalently embedded in the silica network. Through the incorporation of functional nucleic acids into the organosilica framework, the particles respond to various biological, physical, and chemical inputs, resulting in detectable physicochemical changes. The one-step bottom-up approach used to prepare organosilica NPs provides multifunctional systems that combine the tunability of oligonucleotides with the stiffness, low cost, and biocompatibility of silica for different applications ranging from drug delivery to sensing