The use of otolith morphology to indicate the stock structure of common coral trout (Plectropomus leopardus) on the Great Barrier Reef, Australia

We investigated the use of otolith morphology to indicate the stock structure of an exploited serranid coral reef fish, Plectropomus leopardus, on the Great Barrier Reef (GBR), Australia. Otoliths were measured by traditional one-and two-dimensional measures (otolith length, width, area, perimeter, circularity, and rectangularity), as well as by Fourier analysis to capture the finer details of otolith shape. Variables were compared among four regions of the GBR separated by hundreds of kilometers, as well as among three reefs within each region, hundreds of meters to tens of kilometers apart. The temporal stability in otolith structure was examined by comparing two cohorts of fully recruited four-year-old P. leopardus collected two years before and two years after a signif icant disturbance in the southern parts of the GBR caused by a large tropical cyclone in March 1997. Results indicated the presence of at least two stocks of P. leopardus, although the structure of each stock varied depending on the cohort considered. The results highlight the importance of incorporating data from several years in studies using otolith morphology to discriminate temporary and possibly misleading signals from those that indicate persistent spatial structure in stocks. We conclude that otolith morphology can be used as an initial step to direct further research on groups of P. leopardus that have lived at least a part of their life in different environments

Cormorant predation effects on fish populations: A global meta-analysis

This paper provides the results from the first meta-analysis to examine the impact of cormorant (Phalacrocoracidae) predation on fish. It is based on a systematic search of literature, covering studies using significance-based hypotheses tests on the relation between fish parameters and cormorant abundance. The results show that extensive research on cormorant diet exists, but few studies use statistical hypotheses testing to examine the effect on fish populations. In total, 603 publications were identified from titles and abstracts, to include the interaction between cormorants and fish. From these, 27 articles tested fish population parameters against cormorant predation, whereof 22 could be included in analyses. The effect size was defined negative in cases when cormorant numbers or presence reduced fish numbers or biomasses, or when individual fish sizes decreased, and vice versa for a positive effect. In a hierarchical dependence model, the combined effect of cormorant predation on fish was negative, but the overall effect was not significant at the 95% confidence level (-0.169, 95% C.L. -0.505 to 0.167, p = .256, df = 5.26). A covariate analysis revealed a difference in predatory effects between fish prey taxa (p = .006, df = 5.73), but no difference in effect sizes between study type, foraging habitat, or response variable measured. The meta-analysis reveals a complex interaction between cormorants and fish, but adds to the consensus on the importance of considering cormorant predatory effects in research, conservation actions, ecosystem-based management, and environmental monitoring

Spatially explicit stock assessment uncovers sequential depletion of northern shrimp stock components in the North Sea

Space is a critical component of fisheries management. Despite this, very few of the world's fish and shellfish stocks are currently assessed using methods that are spatially structured. In the Northeast Atlantic, northern shrimp in the North Sea and Skagerrak, is currently assessed using a spatially structured assessment model. This metapopulation model includes two spatial units (the Norwegian Deep and the Skagerrak), however, in the recent past, the fishery on northern shrimp in the North Sea also occurred in a third neighbouring fishing area, the Fladen Ground. Here, we have reconstructed the dynamics of northern shrimp in the Fladen Ground using historic landings, a standardized commercial index of abundance and fragmented survey data and integrated this third spatial unit into the assessment model of the stock. In doing so, we find evidence of sequential spatial depletion, whereby high rates of fishing mortality have successively eroded stock components in a west to east pattern of overexploitation and produced cryptic collapses. This finding is the first documented case of sequential spatial depletion in the Northeast Atlantic, a phenomenon that could be common and largely overlooked by stock assessment methods that are inherently non-spatial

Spatially explicit stock assessment uncovers sequential depletion of northern shrimp stock components in the North Sea

Space is a critical component of fisheries management. Despite this, very few of the world's fish and shellfish stocks are currently assessed using methods that are spatially structured. In the Northeast Atlantic, northern shrimp in the North Sea and Skagerrak, is currently assessed using a spatially structured assessment model. This metapopulation model includes two spatial units (the Norwegian Deep and the Skagerrak), however, in the recent past, the fishery on northern shrimp in the North Sea also occurred in a third neighbouring fishing area, the Fladen Ground. Here, we have reconstructed the dynamics of northern shrimp in the Fladen Ground using historic landings, a standardized commercial index of abundance and fragmented survey data and integrated this third spatial unit into the assessment model of the stock. In doing so, we find evidence of sequential spatial depletion, whereby high rates of fishing mortality have successively eroded stock components in a west to east pattern of overexploitation and produced cryptic collapses. This finding is the first documented case of sequential spatial depletion in the Northeast Atlantic, a phenomenon that could be common and largely overlooked by stock assessment methods that are inherently non-spatial.publishedVersio

Lack of panmixia of Bothnian Bay vendace-Implications for fisheries management

Overexploitation of fisheries is recognized as a major environmental and socioeconomic problem that threats biodiversity and ecosystem functioning. Inappropriate management policies of fish stocks have been applied as a consequence of inadequate characterization of subtle genetic structure in many fish species. In this study, we aim to assess the extent of genetic differentiation and structure of vendace (Coregonus albula) collected from eight locations in the Bothnian Bay, the northernmost part of the Baltic Sea. Specifically, we test if this species forms a single panmictic population or is divided into several genetically distinct units. We used restriction site-associated DNA sequencing (RAD-seq) to identify 21,792 SNPs based on 266 individuals. We identified a clear pattern of genetic differentiation between River Kalix and the other sampling locations, and a weak structuring between samples from Swedish and Finnish coast. Outlier analysis detected 41 SNPs putatively under divergent selection, mainly reflecting the divergence between River Kalix and the other samples. The outlier SNPs were located within or near 25 genes, including voltage-dependent calcium channel subunit alpha-2 (CACNA2D2), cadherin 26 (CDH26) and carbonic anhydrase 4-like (CA4) that have earlier been associated with salt-tolerance and salinity stress. Our study provides the first genome-wide perspective on genetic structuring of Baltic Sea vendace and rejects the hypothesis of panmixia in the Bothnian Bay. As such, our work demonstrates the power of RAD-sequencing to detect low but significant genetic structuring relevant for fisheries management