Temperature optima for growth and photosynthetic processes in Trebouxia erici isolated from an Antarctic lichen and cultivated in a temperature gradient

The temperature optimum for photosynthesis and growth of natural populations of Trebouxia erici isolated from an Antarctic lichen (Usnea antarctica) was determined using a long-term cultivation (26 days) at different temperatures. Several chlorophyll fluorescence parameters were used in T. erici cultivated in a liquid medium to assess the effect of cultivation temperature (0, 10, 20 and 30oC). Analysis of time courses of the capacity of photosynthetic processes in PS II (FV/FM), effective quantum yield of photosystem II (FPSII), relative fluorescence decline ratio (RFd), and quenching of background chlorophyll fluorescence (qF0) revealed that optimum temperature is between 10 to 20°C. Biomass production evaluated as a total chlorophyll production after 26 days of cultivation was maximal at 20°C. The results are discussed in relation to the data reported by other literature sources for Trebouxia sp. and other algae isolated from chlorolichens

Iron Isotope Fractionation during Fe(II) Oxidation Mediated by the Oxygen-Producing Marine Cyanobacterium Synechococcus PCC 7002

In this study, we couple iron isotope analysis to microscopic and mineralogical investigation of iron speciation during circumneutral Fe(II) oxidation and Fe(III) precipitation with photosynthetically produced oxygen. In the presence of the cyanobacterium Synechococcus PCC 7002, aqueous Fe(II) (Fe(II)aq) is oxidized and precipitated as amorphous Fe(III) oxyhydroxide minerals (iron precipitates, Feppt), with distinct isotopic fractionation (ε56Fe) values determined from fitting the δ56Fe(II)aq (1.79‰ and 2.15‰) and the δ56Feppt (2.44‰ and 2.98‰) data trends from two replicate experiments. Additional Fe(II) and Fe(III) phases were detected using microscopy and chemical extractions and likely represent Fe(II) and Fe(III) sorbed to minerals and cells. The iron desorbed with sodium acetate (FeNaAc) yielded heavier δ56Fe compositions than Fe(II)aq. Modeling of the fractionation during Fe(III) sorption to cells and Fe(II) sorption to Feppt, combined with equilibration of sorbed iron and with Fe(II)aq using published fractionation factors, is consistent with our resulting δ56FeNaAc. The δ56Feppt data trend is inconsistent with complete equilibrium exchange with Fe(II)aq. Because of this and our detection of microbially excreted organics (e.g., exopolysaccharides) coating Feppt in our microscopic analysis, we suggest that electron and atom exchange is partially suppressed in this system by biologically produced organics. These results indicate that cyanobacteria influence the fate and composition of iron in sunlit environments via their role in Fe(II) oxidation through O2 production, the capacity of their cell surfaces to sorb iron, and the interaction of secreted organics with Fe(III) minerals

An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives

The stability of polycyclic aromatic hydrocarbons (PAHs) upon soft X-ray absorption is of crucial relevance for PAH survival in X-ray dominated regions (XDRs). PAH stability depends on molecular size but also on the degree of hydrogenation that is related to H2 formation in the interstellar medium (ISM). In this project, we intend to reveal the changes of electronic structure caused by hydrogenation and the impact of hydrogenation on the stability of the carbon backbone for cationic pyrene and its hydrogenated derivatives by analysis of near C K-edge soft X-ray photoions. In our experiments, the PAH cations were trapped in a cryogenic radiofrequency (RF) linear ion trap and exposed to monochromatic X-rays with energies from 279 eV to 300 eV. The photo-products were mass-analyzed by means of time-of-flight (TOF) spectroscopy. Partial ion yields (PIYs) were then studied as a function of photon energy. X-ray absorption spectra computed by time-dependent density functional theory (TD-DFT) aided the interpretation of the experimental results. A very good agreement between experimental data and TDDFT with short-range corrected (SRC) functionals for all PAH ions was reached. The near-edge X-ray absorption mass spectra (NEXAMS) exhibit clear peaks due to C 1s transitions to singly occupied molecular orbitals SOMO and to low-lying unoccupied molecular orbitals. In contrast to coronene cations, where hydrogen attachment drastically increases photostability of coronene, the influence of hydrogenation on photostability is substantially weaker for pyrene cations. Here, hydrogen attachment even destabilizes the molecular structure. An astrophysical model describes the half-life of PAH ions in interstellar environments

The Highest Oxidation State of Rhodium: Rhodium(VII) in [RhO3]+

Although the highest possible oxidation states of all transition elements are rare, they are not only of fundamental interest but also relevant as potentially strong oxidizing agents. In general, the highest oxidation states are found in the electron‐rich late transition elements of groups 7–9 of the periodic table. Rhodium is the first element of the 4d transition metal series for which the highest known oxidation state does not equal its group number of 9, but reaches only a significantly lower value of +6 in exceptional cases. Higher oxidation states of rhodium have remained elusive so far. In a combined mass spectrometry, X‐ray absorption spectroscopy, and quantum‐chemical study of gas‐phaseRhOn+ (n=1–4), we identify RhO3+ as the 1A1' trioxidorhodium(VII) cation, the first chemical species to contain rhodium in the +7 oxidation state, which is the third‐highest oxidation state experimentally verified among all elements in the periodic table

Exposing the Oxygen-Centered Radical Character of the Tetraoxido Ruthenium(VIII) Cation [RuO4]+

The tetraoxido ruthenium(VIII) radical cation, [RuO4]+, should be a strong oxidizing agent, but has been difficult to produce and investigate so far. In our X-ray absorption spectroscopy study, in combination with quantum-chemical calculations, we show that [RuO4]+, produced via oxidation of ruthenium cations by ozone in the gas phase, forms the oxygen-centered radical ground state. The oxygen-centered radical character of [RuO4]+ is identified by the chemical shift at the ruthenium M3 edge, indicative of ruthenium(VIII), and by the presence of a characteristic low-energy transition at the oxygen K edge, involving an oxygen-centered singly-occupied molecular orbital, which is suppressed when the oxygen-centered radical is quenched by hydrogenation of [RuO4]+ to the closed-shell [RuO4H]+ ion. Hydrogen-atom abstraction from methane is calculated to be only slightly less exothermic for [RuO4]+ than for [OsO4]+

A comparative laboratory study of soft X-ray-induced ionization and fragmentation of five small PAH cations

The interaction between polycyclic aromatic hydrocarbon (PAH) radical cations and X-rays predominantly leads to photofragmentation, a process that strongly depends on PAH size and geometry. In our experiments, five prototypical PAHs were exposed to monochromatic soft X-ray photons with energies in the C K-edge regime. As a function of soft X-ray photon energy, photoion yields were obtained by means of time-of-flight mass spectrometry. The resulting near-edge X-ray absorption mass spectra were interpreted using time-dependent density functional theory (TD-DFT) with a short-range corrected functional. We found that the carbon backbone of anthracene$$^+$$(C$$_{14}$$H$$_{10}^+$$), pyrene$$^+$$(C$$_{16}$$H$$_{10}^+$$) and coronene$$^+$$(C$$_{24}$$H$$_{12}^+$$) can survive soft X-ray absorption, even though mostly intermediate size fragments are formed. In contrast, for hexahydropyrene$$^+$$(C$$_{16}$$H$$_{16}^+$$) and triphenylene$$^+$$(C$$_{18}$$H$$_{12}^+$$) molecular survival is not observed and the fragmentation pattern is dominated by small fragments. For a given excitation energy, molecular survival evidently does not simply correlate with PAH size but strongly depends on other PAH properties

Rangelands at equilibrium and non-equilibrium recent developments in the debate around rangeland ecology and management

The debate on equilibrium vs non-equilibrium dynamics in pastoral systems emerged in the early 1980s, when economists, ecologists and social scientists began to challenge the widespread claims of overgrazing and degradation in African rangelands and subsequent interventions based on rangeland succession theory and correct stocking rates (for example, Sandford 1982; 1983; Homewood & Rodgers 1987; Ellis & Swift 1988; Abel & Blaikie 1989; Westoby et al. 1989). The debate gained momentum in the early 1990s after two international workshops around emergent new paradigms in rangeland ecology and socio-economics (Woburn I and II), which resulted in the publication of two books, Range Ecology at Disequilibrium edited by Behnke et al. (1993) and Living with Uncertainty edited by Scoones (1994). The ‘new rangeland ecology’ argued that the traditional, equilibrium-based rangeland models did not take into account the considerable spatial heterogeneity and climatic variability of semi-arid rangelands, and that mobility, variable stocking rates and adaptive management were essential for the effective and sustainable utilisation of semi-arid and arid rangelands

Zetaproteobacteria Pan-Genome Reveals Candidate Gene Cluster for Twisted Stalk Biosynthesis and Export

Twisted stalks are morphologically unique bacterial extracellular organo-metallic structures containing Fe(III) oxyhydroxides that are produced by microaerophilic Fe(II)-oxidizers belonging to the Betaproteobacteria and Zetaproteobacteria. Understanding the underlying genetic and physiological mechanisms of stalk formation is of great interest based on their potential as novel biogenic nanomaterials and their relevance as putative biomarkers for microbial Fe(II) oxidation on ancient Earth. Despite the recognition of these special biominerals for over 150 years, the genetic foundation for the stalk phenotype has remained unresolved. Here we present a candidate gene cluster for the biosynthesis and secretion of the stalk organic matrix that we identified with a trait-based analyses of a pan-genome comprising 16 Zetaproteobacteria isolate genomes. The “stalk formation in Zetaproteobacteria” (sfz) cluster comprises six genes (sfz1-sfz6), of which sfz1 and sfz2 were predicted with functions in exopolysaccharide synthesis, regulation, and export, sfz4 and sfz6 with functions in cell wall synthesis manipulation and carbohydrate hydrolysis, and sfz3 and sfz5 with unknown functions. The stalk-forming Betaproteobacteria Ferriphaselus R-1 and OYT-1, as well as dread-forming Zetaproteobacteria Mariprofundus aestuarium CP-5 and Mariprofundus ferrinatatus CP-8 contain distant sfz gene homologs, whereas stalk-less Zetaproteobacteria and Betaproteobacteria lack the entire gene cluster. Our pan-genome analysis further revealed a significant enrichment of clusters of orthologous groups (COGs) across all Zetaproteobacteria isolate genomes that are associated with the regulation of a switch between sessile and motile growth controlled by the intracellular signaling molecule c-di-GMP. Potential interactions between stalk-former unique transcription factor genes, sfz genes, and c-di-GMP point toward a c-di-GMP regulated surface attachment function of stalks during sessile growth

Intramolecular hydrogen transfer in DNA induced by site selective resonant core excitation

We present experimental evidence for soft X ray induced intramolecular hydrogen transfer in the protonated synthetic tri oligonucleotide d FUAG in the gas phase FU fluorouracil . The trinucleotide cations were stored in a cryogenic ion trap and exposed to monochromatic synchrotron radiation. Photoionization and photofragmentation product ion yields were recorded as a function of photon energy. Predominanly glycosidic bond cleavage leading to formation of nucleobase related fragments is observed. In most cases, glycosidic bond cleavage is accompanied by single or double hydrogen transfer. The combination of absorption site sensitive soft X ray spectroscopy with fragment specific mass spectrometry allows to directly relate X ray absorption site and fragmentation site. We observe pronounced resonant features in the competition between single and double hydrogen transfer towards nucleobases. A direct comparison of experimental data with time dependent density functional theory calculations, using short range corrected hybrid functionals, reveal that these hydrogen transfer processes are universal and not limited to population of particular excited states localized at the nucleobases. Instead, hydrogen transfer can occur upon X ray absorption in any nucleobase and in the DNA backbone. Resonances seem to occur because of site selective suppression of hydrogen transfer channels. Furthermore, non covalent interactions of the optimized ground state geometries were investigated to identify intramolecular hydrogen bonds along which hydrogen transfer is most likel