Expansions and Discussions of the Phase Gradient Algorithm

The Phase Gradient Autofocus algorithm (PG A) is widely used in spotlight mode SAR for motion compensation. The PG A algorithm has been proven to be a superior autofocus method. The original development needed high signal-to-scatter ratios. An improvement was made easing that restriction, but the narrow beam assumption (range dependent errors) remained. This paper progresses one step further by eliminating the narrow beam assumption. Lower altitude SARs have large range dependencies that cannot be ignored. A new phase estimator for PGA is introduced and extended to allow range dependence. An ERS-1 image of Death Valley is used in simulations comparing the new estimator to the maximum likelihood approach and in demonstrating the range-dependent PGA algorithm. Future approaches to the problem of strip-map SAR are also introduced

Development of planar pixel modules for the ATLAS high luminosity LHC tracker upgrade

The high-luminosity LHC will present significant challenges for tracking systems. ATLAS is preparing to upgrade the entire tracking system, which will include a significantly larger pixel detector. This paper reports on the development of large area planar detectors for the outer pixel layers and the pixel endcaps. Large area sensors have been fabricated and mounted onto 4 FE-I4 readout ASICs, the so-called quad-modules, and their performance evaluated in the laboratory and testbeam. Results from characterisation of sensors prior to assembly, experience with module assembly, including bump-bonding and results from laboratory and testbeam studies are presented

Analysis of edge and surface TCTs for irradiated 3D silicon strip detectors

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Altered Gene Expression in Blood and Sputum in COPD Frequent Exacerbators in the ECLIPSE Cohort

Patients with chronic obstructive pulmonary disease (COPD) who are defined as frequent exacerbators suffer with 2 or more exacerbations every year. The molecular mechanisms responsible for this phenotype are poorly understood. We investigated gene expression profile patterns associated with frequent exacerbations in sputum and blood cells in a well-characterised cohort. Samples from subjects from the ECLIPSE COPD cohort were used; sputum and blood samples from 138 subjects were used for microarray gene expression analysis, while blood samples from 438 subjects were used for polymerase chain reaction (PCR) testing. Using microarray, 150 genes were differentially expressed in blood (>±1.5 fold change, p≤0.01) between frequent compared to non-exacerbators. In sputum cells, only 6 genes were differentially expressed. The differentially regulated genes in blood included downregulation of those involved in lymphocyte signalling and upregulation of pro-apoptotic signalling genes. Multivariate analysis of the microarray data followed by confirmatory PCR analysis identified 3 genes that predicted frequent exacerbations; B3GNT, LAF4 and ARHGEF10. The sensitivity and specificity of these 3 genes to predict the frequent exacerbator phenotype was 88% and 33% respectively. There are alterations in systemic immune function associated with frequent exacerbations; down-regulation of lymphocyte function and a shift towards pro-apoptosis mechanisms are apparent in patients with frequent exacerbations

Are We Making Progress in Medical Education?

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75582/1/j.1525-1497.2006.00446.x.pd

Curse of the black spot: spotting negatively correlate with fitness in black grouse Lyrurus tetrix

There is growing evidence that achromatic plumage can act as honest indicators of male quality. In some species with areas of white plumage, black melanin spots can be found on parts of the feathers. The functional significance of these spots and the relationship with male quality is yet poorly understood. We investigated the relationship between black melanin spots in an otherwise totally white ornament, the undertail covert, in relation to age, fitness and covariance with past and present expression of sexual traits, in the lekking black grouse Lyrurus tetrix. We found that spots at tips of feathers (tip spots) were negatively related to survival and reproductive success, and covaried negatively with current fighting rate. They also covaried positively with past fighting rate, suggesting high investment in fighting leads to carryover effects on male condition. In contrast, spots found further down the feather (vane spots) were unrelated to fitness and morphological and behavioural trait expression. Our results show that melanin spots can indicate some relationship with male quality and that the location of the spots has some importance in this relationship. However, the exact drivers of melanin spot expression and how these link to male quality, are currently unknown

eosinophil derived neurotoxin and clinical outcomes with mepolizumab in severe eosinophilic asthma

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A flexible framework for spatial capture-recapture with unknown identities

Funding: We acknowledge the funding support of the Natural Sciences and Engineering Research Council of Canada (NSERC) and the University of St Andrews. The fisher study was funded by InnoTech Alberta grants, Government of Alberta (Environment and Parks), The Beaver Hills Initiative, Alberta Conservation Association, NSERC, Royal Canadian Geographic Society, TD Friends of the Environment Foundation, and the Fur Institute of Canada scholarships.Camera traps or acoustic recorders are often used to sample wildlife populations. When animals can be individually identified, these data can be used with spatial capture-recapture (SCR) methods to assess populations. However, obtaining animal identities is often labor-intensive and not always possible for all detected animals. To address this problem, we formulate SCR, including acoustic SCR, as a marked Poisson process, comprising a single counting process for the detections of all animals and a mark distribution for what is observed (eg, animal identity, detector location). The counting process applies equally when it is animals appearing in front of camera traps and when vocalizations are captured by microphones, although the definition of a mark changes. When animals cannot be uniquely identified, the observed marks arise from a mixture of mark distributions defined by the animal activity centers and additional characteristics. Our method generalizes existing latent identity SCR models and provides an integrated framework that includes acoustic SCR. We apply our method to estimate density from a camera trap study of fisher (Pekania pennanti) and an acoustic survey of Cape Peninsula moss frog (Arthroleptella lightfooti). We also test it through simulation. We find latent identity SCR with additional marks such as sex or time of arrival to be a reliable method for estimating animal density.Peer reviewe

Precision scans of the pixel cell response of double sided 3D pixel detectors to pion and x-ray beams

hree-dimensional (3D) silicon sensors offer potential advantages over standard planar sensors for radiation hardness in future high energy physics experiments and reduced charge-sharing for X-ray applications, but may introduce inefficiencies due to the columnar electrodes. These inefficiencies are probed by studying variations in response across a unit pixel cell in a 55μm pitch double-sided 3D pixel sensor bump bonded to TimePix and Medipix2 readout ASICs. Two complementary characterisation techniques are discussed: the first uses a custom built telescope and a 120GeV pion beam from the Super Proton Synchrotron (SPS) at CERN; the second employs a novel technique to illuminate the sensor with a micro-focused synchrotron X-ray beam at the Diamond Light Source, UK. For a pion beam incident perpendicular to the sensor plane an overall pixel efficiency of 93.0±0.5% is measured. After a 10o rotation of the device the effect of the columnar region becomes negligible and the overall efficiency rises to 99.8±0.5%. The double-sided 3D sensor shows significantly reduced charge sharing to neighbouring pixels compared to the planar device. The charge sharing results obtained from the X-ray beam study of the 3D sensor are shown to agree with a simple simulation in which charge diffusion is neglected. The devices tested are found to be compatible with having a region in which no charge is collected centred on the electrode columns and of radius 7.6±0.6μm. Charge collection above and below the columnar electrodes in the double-sided 3D sensor is observed