Discovering the Role of Repeat Sequences in Regulation of the phaZ Gene in Streptomyces sp. SFB5A

Streptomyces sp. SFB5A is an actinomycete (filamentous bacterium) that degrades PHB using an extracellular PHB depolymerase. PHB depolymerase synthesis is induced by growth on PHB and repressed by glucose (or other preferred carbon sources)2, which suggests that there is transcriptional regulation of its corresponding gene, phaZ. Binding sites are suspected to be the repeat sequences found in the phaZ gene. There are 3 different sets of primers that can be made in order to emphasize specific functional repeats while disrupting the functionality of others. The goal of the project is to transform Streptomyces sp. 5A with constructs containing a resistance gene and PCR products from the aforementioned primers, and then observe expression via culturing. The cells were attempted to be transformed via protoplast transformation. A more efficient method for protoplasting was discovered

Building research capacity in Education: evidence from recent initiatives in England, Scotland and Wales.

There is a pressing need to build research capacity in Education across the UK to combat the effects of the ageing research population and the increasing polarisation between research-intensive institutions and the remainder of the field. This paper draws data from three evaluations of recent initiatives across the UK to explore the necessary conditions for effectively building research capacity. Technicist and situated learning models are explored in relation to the immediate and longer term professional development of the research workforce, and we identify that central to the effectiveness of this professional learning is: (1) interpersonal support from more experienced colleagues; and (2) institutional support for research engagement, primarily in the provision of time and an infrastructure which can support research activity. We conclude that the development of, and engagement with, inter-institutional, inter-project communities is imperative to this process

Extraction of Transcriptional Regulators for the Polyhydroxyalkanoate Depolymerase Gene from Streptomyces nymphaeiformis

Plastic waste has become an increasingly prevalent environmental pollutant. This problem is exacerbated by the inability of plastic to degrade under most natural conditions. In contrast, polyhydroxyalkanoates (PHAs) are biologically produced, plastic-like polymers that can be broken down and metabolized by bacteria. The bacterium Streptomyces nymphaeiformis can degrade the PHA, polyhydroxybutrate (PHB), using an extracellular PHB depolymerase, which is encoded by the phaZ gene. PHB depolymerase is synthesized only in the presence of PHB or its monomer, but not glucose, suggesting that transcription of phaZ is regulated, presumably by transcriptional regulatory proteins that bind to its promoter region. The DNA base sequence of phaZ has previously been determined. In the predicted promoter region, there are sequences with homology to binding sites for known transcriptional regulators from other bacteria. A modified pull-down assay using streptavidin magnetic beads was evaluated for success in elucidating potential regulatory DNA-binding proteins for the phaZ gene. However, the method was unsuccessful

A new rhizangiid genus from the Miocene of North America (Sclerangia n. gen.; Florida, USA)

The colonial rhizangiid genus Sclerangia n. gen. is described from the Miocene of the USA (Chipola Formation, Florida). The new genus is characterized by plocoid to subcerioid polyp integration, cylindrical to subcylindrical or tympanoid corallites, and an endotheca that is generally absent or made of a very small number of vesicular dissepiments. Compared to other rhizangiid genera, the new taxon is characterized by rather weakly dentate septa. In addition, the new genus differs from all the rhizangiid genera by its consistent encrustation of dead gastropod shells that are inhabited by sipunculid worms

Prevalence of autism in mainland China, Hong Kong and Taiwan: a systematic review and meta-analysis.

BACKGROUND: The prevalence of autism spectrum conditions (ASC) is 1% in developed countries, but little data are available from mainland China, Hong Kong and Taiwan. This study synthesizes evidence relating to the prevalence of ASC in these areas and assesses the effects of research methodology on prevalence estimates. METHODS: Systematic literature searches were conducted in PubMed, Web of Knowledge, China Web of Knowledge and Weipu databases, as well as relevant papers published from 1987 to 2011, reporting prevalence estimates of ASC or childhood autism in mainland China, Hong Kong and Taiwan. Summary estimates of prevalence were calculated with a random effects model. The effects of research methodology on the prevalence estimates were assessed using a meta-regression model. RESULTS: There were 25 studies eligible for review, 18 of which were suitable for inclusion in a meta-analysis. Pooled prevalence of childhood autism was 11.8 per 10,000 individuals (95% confidence interval (CI): 8.2, 15.3) in mainland China. Pooled prevalence of ASC was 26.6 per 10,000 (95% CI: 18.5, 34.6) in three areas. Substantial heterogeneity was identified between studies (I2>75%). The prevalence estimate of childhood autism was most strongly associated with the choice of screening instrument. After adjustment for age group, the odds ratio for prevalence estimates when using the Autism Behavior Checklist (ABC) as the screening instrument compared with those using the Clancy Autism Behavior Scale (CABS) was 0.29 (95% CI: 0.12, 0.69), and 1.79 (95% CI: 0.70, 4.55; P= 0.20) when using the Checklist for Autism in Toddlers (CHAT) compared to the CABS. CONCLUSIONS: The available studies investigating the prevalence of ASC in China, Hong Kong and Taiwan have focused mainly on childhood autism rather than the whole spectrum. The prevalence estimates are lower than estimates from developed countries. Studies using more recently developed screening instruments reported higher prevalence than older ones. However, available studies have methodological weaknesses and therefore these results lack comparability with those from developed countries. Our findings indicate a potential under-diagnosis and under-detection of ASC in mainland China, Hong Kong and Taiwan, and a need to adopt more advanced methods for research of ASC in these areas.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

Towards Interactive Multidimensional Visualisations for Corpus Linguistics

We propose the novel application of dynamic and interactive visualisation techniques to support the iterative and exploratory investigations typical of the corpus linguistics methodology. Very large scale text analysis is already carried out in corpus-based language analysis by employing methods such as frequency profiling, keywords, concordancing, collocations and n-grams. However, at present only basic visualisation methods are utilised. In this paper, we describe case studies of multiple types of key word clouds, explorer tools for collocation networks, and compare network and language distance visualisations for online social networks. These are shown to fit better with the iterative data-driven corpus methodology, and permit some level of scalability to cope with ever increasing corpus size and complexity. In addition, they will allow corpus linguistic methods to be used more widely in the digital humanities and social sciences since the learning curve with visualisations is shallower for non-expert

Job design and employee engagement

Engage for Success White Paper no. 2014-0