Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

Background Marine microbial communities have been essential contributors to global biomass, nutrient cycling, and biodiversity since the early history of Earth, but so far their community distribution patterns remain unknown in most marine ecosystems. Methodology/Principal Findings The synthesis of 9.6 million bacterial V6-rRNA amplicons for 509 samples that span the global ocean's surface to the deep-sea floor shows that pelagic and benthic communities greatly differ, at all taxonomic levels, and share <10% bacterial types defined at 3% sequence similarity level. Surface and deep water, coastal and open ocean, and anoxic and oxic ecosystems host distinct communities that reflect productivity, land influences and other environmental constraints such as oxygen availability. The high variability of bacterial community composition specific to vent and coastal ecosystems reflects the heterogeneity and dynamic nature of these habitats. Both pelagic and benthic bacterial community distributions correlate with surface water productivity, reflecting the coupling between both realms by particle export. Also, differences in physical mixing may play a fundamental role in the distribution patterns of marine bacteria, as benthic communities showed a higher dissimilarity with increasing distance than pelagic communities. Conclusions/Significance This first synthesis of global bacterial distribution across different ecosystems of the World's oceans shows remarkable horizontal and vertical large-scale patterns in bacterial communities. This opens interesting perspectives for the definition of biogeographical biomes for bacteria of ocean waters and the seabed

Boron isotopes in foraminifera : systematics, biomineralisation, and CO2 reconstruction

Funding: Fellowship from University of St Andrews, $100 (pending) from Richard Zeebe, UK NERC grants NE/N003861/1 and NE/N011716/1.The boron isotope composition of foraminifera provides a powerful tracer for CO2 change over geological time. This proxy is based on the equilibrium of boron and its isotopes in seawater, which is a function of pH. However while the chemical principles underlying this proxy are well understood, its reliability has previously been questioned, due to the difficulty of boron isotope (δ11B) analysis on foraminferal samples and questions regarding calibrations between δ11B and pH. This chapter reviews the current state of the δ11B-pH proxy in foraminfera, including the pioneering studies that established this proxy’s potential, and the recent work that has improved understanding of boron isotope systematics in foraminifera and applied this tracer to the geological record. The theoretical background of the δ11B-pH proxy is introduced, including an accurate formulation of the boron isotope mass balance equations. Sample preparation and analysis procedures are then reviewed, with discussion of sample cleaning, the potential influence of diagenesis, and the strengths and weaknesses of boron purification by column chromatography versus microsublimation, and analysis by NTIMS versus MC-ICPMS. The systematics of boron isotopes in foraminifera are discussed in detail, including results from benthic and planktic taxa, and models of boron incorporation, fractionation, and biomineralisation. Benthic taxa from the deep ocean have δ11B within error of borate ion at seawater pH. This is most easily explained by simple incorporation of borate ion at the pH of seawater. Planktic foraminifera have δ11B close to borate ion, but with minor offsets. These may be driven by physiological influences on the foraminiferal microenvironment; a novel explanation is also suggested for the reduced δ11B-pH sensitivities observed in culture, based on variable calcification rates. Biomineralisation influences on boron isotopes are then explored, addressing the apparently contradictory observations that foraminifera manipulate pH during chamber formation yet their δ11B appears to record the pH of ambient seawater. Potential solutions include the influences of magnesium-removal and carbon concentration, and the possibility that pH elevation is most pronounced during initial chamber formation under favourable environmental conditions. The steps required to reconstruct pH and pCO2 from δ11B are then reviewed, including the influence of seawater chemistry on boron equilibrium, the evolution of seawater δ11B, and the influence of second carbonate system parameters on δ11B-based reconstructions of pCO2. Applications of foraminiferal δ11B to the geological record are highlighted, including studies that trace CO2 storage and release during recent ice ages, and reconstructions of pCO2 over the Cenozoic. Relevant computer codes and data associated with this article are made available online.Publisher PDFPeer reviewe

High resolution isotope study of the latest deglaciation based on Bermuda Rise cores

A stable isotope and 14C investigation of carbonates from three late Quaternary cores with high rates of sedimentation from the northeastern Bermuda Rise has produced the highest resolution record of the glacial maximum to Holocene stable isotope change yet obtained from an open ocean location. The record includes a three-step "termination" and the first direct evidence of an early deglacial meltwater "spike" in the open sea. © 1984

High resolution isotope study of the latest deglaciation based on Bermuda Rise cores

A stable isotope and C investigation of carbonates from three late Quaternary cores with high rates of sedimentation from the northeastern Bermuda Rise has produced the highest resolution record of the glacial maximum to Holocene stable isotope change yet obtained from an open ocean location. The record includes a three-step "termination" and the first direct evidence of an early deglacial meltwater "spike" in the open sea. © 1984. 1

Geochemical Evidence for Suppression of Pelagic Marine Productivity at the Cretaceous/Tertiary Boundary

The normal, biologically productive ocean is characterized by a gradient of the 13C /12C ratio from surface to deep waters. Here we present stable isotope data from planktonic and benthic microfossils across the Cretaceous/Tertiary boundary in the North pacific, which reveal a rapid and complete breakdown in this biologically mediated gradient. The fluxes of barium (a proxy for organic carbon) and CaCO, also decrease significantly at the time of the major marine plankton extinctions. The implied substantial reduction in oceanic primary productivity persisted for ~0.5 Myr before the carbon isotope gradient was gradually re-established. In addition, the stable isotope and preservational data indicate that environmental change, including cooling, began at least 200 kyr before the Cretaceous/Tertiary boundary, and a peak warming of ~3 °C occurred 600 kyr after the boundary event