Genetic variants in ARID5B and CEBPE are childhood ALL susceptibility loci in Hispanics.

Recent genome-wide studies conducted in European Whites have identified novel susceptibility genes for childhood acute lymphoblastic leukemia (ALL). We sought to examine whether these loci are susceptibility genes among Hispanics, whose reported incidence of childhood ALL is the highest of all ethnic groups in California, and whether their effects differ between Hispanics and non-Hispanic Whites (NHWs). We genotyped 13 variants in these genes among 706 Hispanic (300 cases, 406 controls) and 594 NHW (225 cases, 369 controls) participants in a matched population-based case-control study in California. We found significant associations for the five studied ARID5B variants in both Hispanics (p values of 1.0 × 10(-9) to 0.004) and NHWs (p values of 2.2 × 10(-6) to 0.018). Risk estimates were in the same direction in both groups (ORs of 1.53-1.99 and 1.37-1.84, respectively) and strengthened when restricted to B-cell precursor high-hyperdiploid ALL (>50 chromosomes; ORs of 2.21-3.22 and 1.67-2.71, respectively). Similar results were observed for the single CEBPE variant. Hispanics and NHWs exhibited different susceptibility loci at CDKN2A. Although IKZF1 loci showed significant susceptibility effects among NHWs (p < 1 × 10(-5)), their effects among Hispanics were in the same direction but nonsignificant, despite similar minor allele frequencies. Future studies should examine whether the observed effects vary by environmental, immunological, or lifestyle factors

Avaliação qualitativa e quantitativa da microbiota do solo e da fixação biológica do nitrogênio pela soja.

O objetivo deste trabalho foi definir, para as condições edafoclimáticas do Brasil, níveis aceitáveis de dispersão de alguns parâmetros biológicos, utilizados em estudos de impacto ambiental de novas tecnologias usadas na cultura da soja. Dois ensaios com soja convencional e transgênica foram conduzidos em 11 municípios de seis estados e no Distrito Federal; os parâmetros avaliados foram: carbono e nitrogênio da biomassa microbiana, respiração basal e quociente metabólico microbiano, eletroforese do DNA do solo em géis desnaturantes (DGGE), fixação biológica do nitrogênio, população de rizóbios, número e massa de nódulos secos, ocupação dos nódulos pelas estirpes de Bradyrhizobium, massa de matéria seca da parte aérea, nitrogênio total e nitrogênio como ureídos na parte aérea. A variabilidade temporal de: carbono e nitrogênio, da biomassa microbiana, da respiração basal e do quociente metabólico microbiano foi adequada, e o coeficiente de variação máximo aceitável foi estimado em 35%. A homogeneidade entre repetições, tratamentos e coletas foi confirmada por DGGE. Em solos pobres em nitrogênio, os parâmetros de massa de nódulos e massa da parte aérea, com coeficiente de variação máximo de 33 e 18%, respectivamente, foram adequados para avaliar a fixação biológica do N, que contribuiu com 72 a 88% do nitrogênio total da parte aérea

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

<p>Abstract</p> <p>Background</p> <p>Species belonging to the Rhizobiales are intriguing and extensively researched for including both bacteria with the ability to fix nitrogen when in symbiosis with leguminous plants and pathogenic bacteria to animals and plants. Similarities between the strategies adopted by pathogenic and symbiotic Rhizobiales have been described, as well as high variability related to events of horizontal gene transfer. Although it is well known that chromosomal rearrangements, mutations and horizontal gene transfer influence the dynamics of bacterial genomes, in Rhizobiales, the scenario that determine pathogenic or symbiotic lifestyle are not clear and there are very few studies of comparative genomic between these classes of prokaryotic microorganisms trying to delineate the evolutionary characterization of symbiosis and pathogenesis.</p> <p>Results</p> <p>Non-symbiotic nitrogen-fixing bacteria and bacteria involved in bioremediation closer to symbionts and pathogens in study may assist in the origin and ancestry genes and the gene flow occurring in Rhizobiales. The genomic comparisons of 19 species of Rhizobiales, including nitrogen-fixing, bioremediators and pathogens resulted in 33 common clusters to biological nitrogen fixation and pathogenesis, 15 clusters exclusive to all nitrogen-fixing bacteria and bacteria involved in bioremediation, 13 clusters found in only some nitrogen-fixing and bioremediation bacteria, 01 cluster exclusive to some symbionts, and 01 cluster found only in some pathogens analyzed. In BBH performed to all strains studied, 77 common genes were obtained, 17 of which were related to biological nitrogen fixation and pathogenesis. Phylogenetic reconstructions for Fix, Nif, Nod, Vir, and Trb showed possible horizontal gene transfer events, grouping species of different phenotypes.</p> <p>Conclusions</p> <p>The presence of symbiotic and virulence genes in both pathogens and symbionts does not seem to be the only determinant factor for lifestyle evolution in these microorganisms, although they may act in common stages of host infection. The phylogenetic analysis for many distinct operons involved in these processes emphasizes the relevance of horizontal gene transfer events in the symbiotic and pathogenic similarity.</p

Modelos matemáticos para ajuste da produção de gases in vitro em diferentes tempos de incubação e cinética ruminal de silagens de milho.

Suplemento 1