Rapid detection of Mycobacterium ulcerans with isothermal recombinase polymerase amplification assay.

Background Access to an accurate diagnostic test for Buruli ulcer (BU) is a research priority according to the World Health Organization. Nucleic acid amplification of insertion sequence IS2404 by polymerase chain reaction (PCR) is the most sensitive and specific method to detect Mycobacterium ulcerans (M. ulcerans), the causative agent of BU. However, PCR is not always available in endemic communities in Africa due to its cost and technological sophistication. Isothermal DNA amplification systems such as the recombinase polymerase amplification (RPA) have emerged as a molecular diagnostic tool with similar accuracy to PCR but having the advantage of amplifying a template DNA at a constant lower temperature in a shorter time. The aim of this study was to develop RPA for the detection of M. ulcerans and evaluate its use in Buruli ulcer disease. Methodology and principal findings A specific fragment of IS2404 of M. ulcerans was amplified within 15 minutes at a constant 42°C using RPA method. The detection limit was 45 copies of IS2404 molecular DNA standard per reaction. The assay was highly specific as all 7 strains of M. ulcerans tested were detected, and no cross reactivity was observed to other mycobacteria or clinically relevant bacteria species. The clinical performance of the M. ulcerans (Mu-RPA) assay was evaluated using DNA extracted from fine needle aspirates or swabs taken from 67 patients in whom BU was suspected and 12 patients with clinically confirmed non-BU lesions. All results were compared to a highly sensitive real-time PCR. The clinical specificity of the Mu-RPA assay was 100% (95% CI, 84–100), whiles the sensitivity was 88% (95% CI, 77–95). Conclusion The Mu-RPA assay represents an alternative to PCR, especially in areas with limited infrastructure. Author summary Current diagnostic methods to detect M. ulcerans suffer from delayed time-to-results in most endemic countries by the prolonged period of time for the shipment and storage of samples to a distant, centralized laboratory. The M. ulcerans recombinase polymerase amplification assay (Mu-RPA) is a new, rapid diagnostic test developed for the detection of M. ulcerans infection, known commonly as Buruli ulcer, a chronic, debilitating, necrotizing disease of the skin and soft tissues. This assay is suitable for use on a portable detection device, with the potential to be used for quick diagnosis at the point of need, providing timely results to health workers at Buruli ulcer treatment clinics

Vibration and noise characteristics of hook type olive harvesters

The objective of this study was to obtain and evaluate the vibration and noise characteristics of portable hook type mechanical olive harvesters. Experiments included five hook type olive harvesters. In this study, the vibration and sound pressure levels of different harvesters were measured at idling and full load condition. The vibration levels on the handle grip of harvesters were measured and analyzed for both operator’s right and left hand, respectively. The sound pressure level was measured at ear level of the operator. The frequency weighting acceleration was calculated. The vibration total value was expressed as the root-mean-square (rms) of three component values. The acceleration values vary between 5.52 and 39.15 ms-2 for right hand and 4.18 and 61.01 ms-2 for left hand. The equivalent noise pressure levels of the harvesters were measured between 91 and 103 dB (A) in the full loading conditions and between 67 and 80 dB (A) idling working conditions.Key words: Olive harvester, vibration, noise, ha

Conversion of ostrich eggshells (Struthio camelus) to calcium phosphates

© Copyright 2015, The Australian Ceramic Society. The exceptional progress made in orthopaedic and dental applications have increased the demand of calcium phosphate bioceramics due to their chemical similarities to the inorganic component of hard tissues. Low cost production of calcium phosphate bioceramics could be achieved by using pure natural biogenic materials by relatively simple methods. In this study calcium phosphate powders were produced from ostrich (Struthio camelus) eggshell powder at a moderate temperature of 80°C by relatively simple process of low temperature heating by hot plate (HP) and hot platting while agitation with ultrasonication (HPUS) hence introducing mechanical activation. The product structure and compositions were studied with FTIR, SEM, DTA/TCA, XRD and ICP techniques. The results showed that calcium deficient hydroxyapatite and dicalcium phosphate were obtained from HP and HPUS methods. Poorly crystalline calcium deficient hydroxyapatite was converted into whilockite after calcining at 800°C. The results suggest that this low cost and relatively simple method is efficient to easily produce calcium phosphate powders from adequately feed controlled farms to obtain pure uncontaminated eggshells for a range of biomedical applications

A new method for fabrication of nanohydroxyapatite and TCP from the sea snail Cerithium vulgatum

Biphasic bioceramic nanopowders of hydroxyapatite (HA) and β-tricalcium phosphate (TCP) were prepared from shells of the sea snail Cerithium vulgatum (Bruguière, 1792) using a novel chemical method. Calcination of the powders produced was carried out at varying temperatures, specifically at 400°C and 800°C, in air for 4 hours. When compared to the conventional hydrothermal transformation method, this chemical method is very simple, economic, due to the fact that it needs inexpensive and safe equipment, because the transformation of the aragonite and calcite of the shells into the calcium phosphate phases takes place at 80°C under the atmospheric pressure. The powders produced were determined using infrared spectroscopy (FT-IR), X-ray diffraction, and scanning electron microscopy (SEM). The features of the powders produced along with the fact of their biological origin qualify these powders for further consideration and experimentation to fabricate nanoceramic biomaterials. © 2014 O. Gunduz et al

Cardiovascular Dynamics in Crocodylus porosus Breathing Air and During Voluntary Aerobic Dives

Pressure records from the heart and outflow vessels of the heart of Crocodylus porosus resolve previously conflicting results, showing that left aortic filling via the foramen of Panizza may occur during both cardiac diastole and systole. Filling of the left aorta during diastole, identified by the asynchrony and comparative shape of pressure events in the left and right aortae, is reconciled more easily with the anatomy, which suggests that the foramen would be occluded by opening of the pocket valves at the base of the right aorta during systole. Filling during systole, indicated when pressure traces in the left and right aortae could be superimposed, was associated with lower systemic pressures, which may occur at the end of a voluntary aerobic dive or can be induced by lowering water temperature or during a long forced dive. To explain this flexibility, we propose that the foramen of Panizza is of variable calibre. The presence of a 'right-left' shunt, in which increased right ventricular pressure leads to blood being diverted from the lungs and exiting the right ventricle via the left aorta, was found to be a frequent though not obligate correlate of voluntary aerobic dives. This contrasts with the previous concept of the shunt as a correlate of diving bradycardia. The magnitude of the shunt is difficult to assess but is likely to be relatively small. This information has allowed some new insights into the functional significance of the complex anatomy of the crocodilian heart and major blood vessels

On Structural Parameterizations of Hitting Set: Hitting Paths in Graphs Using 2-SAT

Hitting Set is a classic problem in combinatorial optimization. Its input consists of a set system F over a finite universe U and an integer t; the question is whether there is a set of t elements that intersects every set in F. The Hitting Set problem parameterized by the size of the solution is a well-known W[2]-complete problem in parameterized complexity theory. In this paper we investigate the complexity of Hitting Set under various structural parameterizations of the input. Our starting point is the folklore result that Hitting Set is polynomial-time solvable if there is a tree T on vertex set U such that the sets in F induce connected subtrees of T. We consider the case that there is a treelike graph with vertex set U such that the sets in F induce connected subgraphs; the parameter of the problem is a measure of how treelike the graph is. Our main positive result is an algorithm that, given a graph G with cyclomatic number k, a collection P of simple paths in G, and an integer t, determines in time 2^{5k} (|G| +|P|)^O(1) whether there is a vertex set of size t that hits all paths in P. It is based on a connection to the 2-SAT problem in multiple valued logic. For other parameterizations we derive W[1]-hardness and para-NP-completeness results.Comment: Presented at the 41st International Workshop on Graph-Theoretic Concepts in Computer Science, WG 2015. (The statement of Lemma 4 was corrected in this update.

Application of the Ceditest FMDV type O and FMDV-NS enzyme-linked immunosorbent assays for detection of antibodies against Foot-and-mouth disease virus in selected livestock and wildlife species in Uganda

Diagnosis and control of Foot-and-mouth disease virus (FMDV) requires rapid and sensitive diagnostic tests. Two antibody enzyme-linked immunosorbent assay (ELISA) kits, Ceditest® FMDV-NS for the detection of antibodies against the nonstructural proteins of all FMDV serotypes and Ceditest® FMDV type O for the detection of antibodies against serotype O, were evaluated under African endemic conditions where the presence of multiple serotypes and the use of nonpurified vaccines complicate serological diagnosis. Serum samples from 218 African buffalo, 758 cattle, 304 goats, and 88 sheep were tested using both kits, and selected samples were tested not only in serotype-specific ELISAs for antibodies against primarily FMDV serotype O, but also against other serotypes. The FMDV-NS assay detected far more positive samples (93%) than the FMDV type O assay (30%) in buffalo (P < 0.05), with predominant antibodies against the South African Territories (SAT) serotypes, while the seroprevalence was generally comparable in cattle with antibodies against serotype O elicited by infection and/or vaccination. However, some districts had higher seroprevalence using the FMDV type O assay indicating vaccination without infection, while 1 cattle herd with antibodies against the SAT serotypes had far more positive samples (85%) using the FMDV-NS versus the FMDV type O (10%), consistent with the latter test\u27s lower sensitivity for antibodies against SAT serotypes. Based on the current investigation, the FMDV type O ELISA may be limited by the presence of SAT serotypes. The FMD NS assay worked well as a screening test for antibodies against all FMDV serotypes present in Uganda; however, as long as nonpurified vaccines are applied in the region, this test cannot be used to differentiate between vaccinated and infected animals

Preventing mental health problems in offspring by targeting dietary intake of pregnant women

The concept of \u27early life programming\u27 considers the importance of very early environmental exposures throughout the gestational period on the subsequent health outcomes of offspring. The role of maternal dietary intake, specifically, has been highlighted after recent studies have shown maternal diet quality to predict mental health problems in offspring. Even in the pre-conception period, maternal nutrition can have permanent and sustained phenotypic consequences for offspring

A shared framework for the common mental disorders and Non-Communicable Disease: key considerations for disease prevention and control.

BACKGROUND: Historically, the focus of Non Communicable Disease (NCD) prevention and control has been cardiovascular disease (CVD), type 2 diabetes mellitus (T2DM), cancer and chronic respiratory diseases. Collectively, these account for more deaths than any other NCDs. Despite recent calls to include the common mental disorders (CMDs) of depression and anxiety under the NCD umbrella, prevention and control of these CMDs remain largely separate and independent. DISCUSSION: In order to address this gap, we apply a framework recently proposed by the Centers for Disease Control with three overarching objectives: (1) to obtain better scientific information through surveillance, epidemiology, and prevention research; (2) to disseminate this information to appropriate audiences through communication and education; and (3) to translate this information into action through programs, policies, and systems. We conclude that a shared framework of this type is warranted, but also identify opportunities within each objective to advance this agenda and consider the potential benefits of this approach that may exist beyond the health care system