Just valid or even accurate? Determine the measurement accuracy of the pupillographic sleepiness test by applying self and observer ratings

Objective. The purpose of the present study was to provide validation and accuracy data for the pupillographic sleepiness test (PST), on the one hand, by applying self and observer ratings and, on the other hand, by fusioned self and observer ratings as a sleepiness reference value.Methods. A total of 30 healthy women and men participated in a partial sleep deprivation study (20.00–04.00 h) and PST measurements were conducted every 2 h for a total of 113 PST measurements. Karolinska Sleepiness Scale (KSS)-based self-reports and five video-based observer ratings of drowsiness (ORD) were measured immediately before the PST in order to provide reliable reference sleepiness values.Results. PST parameters (pupil unrest index, power of frequency) correlated significantly with the sleepiness validation criteria the KSS and ORD used in this study. Fusioned reference values obtained from one self-report and observer ratings showed a correlation of r = 0.54, a mean absolute percentage error of 1.58 KSS points, and an error of 35%.Conclusion. Our results indicate the moderate validity of the PST. Furthermore, the proposed sleepiness reference value might serve as a feasible intermediate solution to estimate sleepiness in the sense of a reference (“quasi-ground truth”) value. This might be true especially for within-subject designs with a focus on the time course of sleepiness. Moreover, the results might show the necessity to recalculate the thresholds of the current PST categories of sleepiness severity

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

<p>Abstract</p> <p>Background</p> <p>Lungworms of the genus <it>Dictyocaulus </it>(family Dictyocaulidae) are parasitic nematodes of major economic importance. They cause pathological effects and clinical disease in various ruminant hosts, particularly in young animals. <it>Dictyocaulus viviparus</it>, called the bovine lungworm, is a major pathogen of cattle, with severe infections being fatal. In this study, we provide first insights into the transcriptome of the adult stage of <it>D. viviparus </it>through the analysis of expressed sequence tags (ESTs).</p> <p>Results</p> <p>Using our EST analysis pipeline, we estimate that the present dataset of 4436 ESTs is derived from 2258 genes based on cluster and comparative genomic analyses of the ESTs. Of the 2258 representative ESTs, 1159 (51.3%) had homologues in the free-living nematode <it>C. elegans</it>, 1174 (51.9%) in parasitic nematodes, 827 (36.6%) in organisms other than nematodes, and 863 (38%) had no significant match to any sequence in the current databases. Of the <it>C. elegans </it>homologues, 569 had observed 'non-wildtype' RNAi phenotypes, including embryonic lethality, maternal sterility, sterility in progeny, larval arrest and slow growth. We could functionally classify 776 (35%) sequences using the Gene Ontologies (GO) and established pathway associations to 696 (31%) sequences in Kyoto Encyclopedia of Genes and Genomes (KEGG). In addition, we predicted 85 secreted proteins which could represent potential candidates for developing novel anthelmintics or vaccines.</p> <p>Conclusion</p> <p>The bioinformatic analyses of ESTs data for <it>D. viviparus </it>has elucidated sets of relatively conserved and potentially novel genes. The genes discovered in this study should assist research toward a better understanding of the basic molecular biology of <it>D. viviparus</it>, which could lead, in the longer term, to novel intervention strategies. The characterization of the <it>D. viviparus </it>transcriptome also provides a foundation for whole genome sequence analysis and future comparative transcriptomic analyses.</p

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

The lungworm, Dictyocaulus viviparus, causes parasitic bronchitis in cattle, and is responsible for substantial economic losses in temperate regions of the world. Here, we undertake the first large-scale exploration of available transcriptomic data for this lungworm, examine differences in transcription between different stages/both genders and identify and prioritize essential molecules linked to fundamental metabolic pathways, which could represent novel drug targets. Approximately 3 million expressed sequence tags (ESTs), generated by 454 sequencing from third-stage larvae (L3s) as well as adult females and males of D. viviparus, were assembled and annotated. The assembly of these sequences yielded ~61,000 contigs, of which relatively large proportions encoded collagens (4.3%), ubiquitins (2.1%) and serine/threonine protein kinases (1.9%). Subtractive analysis in silico identified 6928 nucleotide sequences as being uniquely transcribed in L3, and 5203 and 7889 transcripts as being exclusive to the adult female and male, respectively. Most peptides predicted from the conceptual translations were nucleoplasmins (L3), serine/threonine protein kinases (female) and major sperm proteins (male). Additional analyses allowed the prediction of three drug target candidates, whose Caenorhabditis elegans homologues were linked to a lethal RNA interference phenotype. This detailed exploration, combined with future transcriptomic sequencing of all developmental stages of D. viviparus, will facilitate future investigations of the molecular biology of this parasitic nematode as well as genomic sequencing. These advances will underpin the discovery of new drug and/or vaccine targets, focused on biotechnological outcomes

Complete Break Up of Ortho Positronium (Ps)- Hydrogenic ion System

The dynamics of the complete breakup process in an Ortho Ps - He+ system including electron loss to the continuum (ELC) is studied where both the projectile and the target get ionized. The process is essentially a four body problem and the present model takes account of the two centre effect on the electron ejected from the Ps atom which is crucial for a proper description of the ELC phenomena. The calculations are performed in the framework of Coulomb Distorted Eikonal Approximation. The exchange effect between the target and the projectile electron is taken into account in a consistent manner. The proper asymptotic 3-body boundary condition for this ionization process is also satisfied in the present model. A distinct broad ELC peak is noted in the fully differential cross sections (5DCS) for the Ps electron corroborating qualitatively the experiment for the Ps - He system. Both the dynamics of the ELC from the Ps and the ejected electron from the target He+ in the FDCS are studied using coplanar geometry. Interesting features are noted in the FDCS for both the electrons belonging to the target and the projectile.Comment: 14 pages,7 figure

Geometrodynamics of Variable-Speed-of-Light Cosmologies

This paper is dedicated to the memory of Dennis Sciama. Variable-Speed-of-Light (VSL) cosmologies are currently attracting interest as an alternative to inflation. We investigate the fundamental geometrodynamic aspects of VSL cosmologies and provide several implementations which do not explicitly break Lorentz invariance (no "hard" breaking). These "soft" implementations of Lorentz symmetry breaking provide particularly clean answers to the question "VSL with respect to what?". The class of VSL cosmologies we consider are compatible with both classical Einstein gravity and low-energy particle physics. These models solve the "kinematic" puzzles of cosmology as well as inflation does, but cannot by themselves solve the flatness problem, since in their purest form no violation of the strong energy condition occurs. We also consider a heterotic model (VSL plus inflation) which provides a number of observational implications for the low-redshift universe if chi contributes to the "dark energy" either as CDM or quintessence. These implications include modified gravitational lensing, birefringence, variation of fundamental constants and rotation of the plane of polarization of light from distant sources.Comment: 19 pages, latex 209, revtex 3.1; To appear in Physical Review D; Numerous small changes of presentation and emphasis; new section on the entropy problem; references updated; central results unaffecte

Axiomatic Theories of Partial Ground I: The Base Theory

This is part one of a two-part paper, in which we develop an axiomatic theory of the relation of partial ground. The main novelty of the paper is the of use of a binary ground predicate rather than an operator to formalize ground. This allows us to connect theories of partial ground with axiomatic theories of truth. In this part of the paper, we develop an axiomatization of the relation of partial ground over the truths of arithmetic and show that the theory is a proof-theoretically conservative extension of the theory P T of positive truth. We construct models for the theory and draw some conclusions for the semantics of conceptualist ground