Liquid drop in a cone - line tension effects

The shape of a liquid drop placed in a cone is analyzed macroscopically. Depending on the values of the cone opening angle, the Young angle and the line tension four different interfacial configurations may be realized. The phase diagram in these variables is constructed and discussed; it contains both the first- and the second-order transition lines. In particular, the tricritical point is found and the value of the critical exponent characterizing the behaviour of the system along the line of the first-order transitions in the neighbourhood of this point is determined.Comment: 11 pages, 4 figure

Reptation in the Rubinstein-Duke model: the influence of end-reptons dynamics

We investigate the Rubinstein-Duke model for polymer reptation by means of density-matrix renormalization group techniques both in absence and presence of a driving field. In the former case the renewal time \tau and the diffusion coefficient D are calculated for chains up to N=150 reptons and their scaling behavior in N is analyzed. Both quantities scale as powers of N: $\tau \sim N^z$ and $D \sim 1/N^x$ with the asymptotic exponents z=3 and x=2, in agreement with the reptation theory. For an intermediate range of lengths, however, the data are well-fitted by some effective exponents whose values are quite sensitive to the dynamics of the end reptons. We find 2.7 <z< 3.3 and 1.8 <x< 2.1 for the range of parameters considered and we suggest how to influence the end reptons dynamics in order to bring out such a behavior. At finite and not too small driving field, we observe the onset of the so-called band inversion phenomenon according to which long polymers migrate faster than shorter ones as opposed to the small field dynamics. For chains in the range of 20 reptons we present detailed shapes of the reptating chain as function of the driving field and the end repton dynamics.Comment: RevTeX 12 Pages and 14 figure

DNA: From rigid base-pairs to semiflexible polymers

The sequence-dependent elasticity of double-helical DNA on a nm length scale can be captured by the rigid base-pair model, whose strains are the relative position and orientation of adjacent base-pairs. Corresponding elastic potentials have been obtained from all-atom MD simulation and from high-resolution structural data. On the scale of a hundred nm, DNA is successfully described by a continuous worm-like chain model with homogeneous elastic properties characterized by a set of four elastic constants, which have been directly measured in single-molecule experiments. We present here a theory that links these experiments on different scales, by systematically coarse-graining the rigid base-pair model for random sequence DNA to an effective worm-like chain description. The average helical geometry of the molecule is exactly taken into account in our approach. We find that the available microscopic parameters sets predict qualitatively similar mesoscopic parameters. The thermal bending and twisting persistence lengths computed from MD data are 42 and 48 nm, respectively. The static persistence lengths are generally much higher, in agreement with cyclization experiments. All microscopic parameter sets predict negative twist-stretch coupling. The variability and anisotropy of bending stiffness in short random chains lead to non-Gaussian bend angle distributions, but become unimportant after two helical turns.Comment: 13 pages, 6 figures, 6 table

A generalized theory of semiflexible polymers

DNA bending on length scales shorter than a persistence length plays an integral role in the translation of genetic information from DNA to cellular function. Quantitative experimental studies of these biological systems have led to a renewed interest in the polymer mechanics relevant for describing the conformational free energy of DNA bending induced by protein-DNA complexes. Recent experimental results from DNA cyclization studies have cast doubt on the applicability of the canonical semiflexible polymer theory, the wormlike chain (WLC) model, to DNA bending on biological length scales. This paper develops a theory of the chain statistics of a class of generalized semiflexible polymer models. Our focus is on the theoretical development of these models and the calculation of experimental observables. To illustrate our methods, we focus on a specific toy model of DNA bending. We show that the WLC model generically describes the long-length-scale chain statistics of semiflexible polymers, as predicted by the Renormalization Group. In particular, we show that either the WLC or our new model adequate describes force-extension, solution scattering, and long-contour-length cyclization experiments, regardless of the details of DNA bend elasticity. In contrast, experiments sensitive to short-length-scale chain behavior can in principle reveal dramatic departures from the linear elastic behavior assumed in the WLC model. We demonstrate this explicitly by showing that our toy model can reproduce the anomalously large short-contour-length cyclization J factors observed by Cloutier and Widom. Finally, we discuss the applicability of these models to DNA chain statistics in the context of future experiments

Fluctuations of a driven membrane in an electrolyte

We develop a model for a driven cell- or artificial membrane in an electrolyte. The system is kept far from equilibrium by the application of a DC electric field or by concentration gradients, which causes ions to flow through specific ion-conducting units (representing pumps, channels or natural pores). We consider the case of planar geometry and Debye-H\"{u}ckel regime, and obtain the membrane equation of motion within Stokes hydrodynamics. At steady state, the applied field causes an accumulation of charges close to the membrane, which, similarly to the equilibrium case, can be described with renormalized membrane tension and bending modulus. However, as opposed to the equilibrium situation, we find new terms in the membrane equation of motion, which arise specifically in the out-of-equilibrium case. We show that these terms lead in certain conditions to instabilities.Comment: 7 pages, 2 figures. submitted to Europhys. Let

Long-Ranged Orientational Order in Dipolar Fluids

Recently Groh and Dietrich claimed the thermodynamic state of a dipolar fluid depends on the shape of the fluid's container. For example, a homogeneous fluid in a short fat container would phase separate when transferred to a tall skinny container of identical volume and temperature. Their calculation thus lacks a thermodynamic limit. We show that removal of demagnetizing fields restores the true, shape independent, thermodynamic limit. As a consequence, spontaneously magnetized liquids display inhomogeneous magnetization textures.Comment: 3 pages, LaTex, no figures. Submitted as comment to PRL, May 199

Anomalous pinning behavior in an incommensurate two-chain model of friction

Pinning phenomena in an incommensurate two-chain model of friction are studied numerically. The pinning effect due to the breaking of analyticity exists in the present model. The pinning behavior is, however, quite different from that for the breaking of analyticity state of the Frenkel-Kontorova model. When the elasticity of chains or the strength of interchain interaction is changed, pinning force and maximum static frictional force show anomalously complicated behavior accompanied by a successive phase transition and they vanish completely under certain conditions.Comment: RevTex, 9 pages, 19 figures, to appear in Phys. Rev. B58 No.23(1998

Scaling for Interfacial Tensions near Critical Endpoints

Parametric scaling representations are obtained and studied for the asymptotic behavior of interfacial tensions in the \textit{full} neighborhood of a fluid (or Ising-type) critical endpoint, i.e., as a function \textit{both} of temperature \textit{and} of density/order parameter \textit{or} chemical potential/ordering field. Accurate \textit{nonclassical critical exponents} and reliable estimates for the \textit{universal amplitude ratios} are included naturally on the basis of the ``extended de Gennes-Fisher'' local-functional theory. Serious defects in previous scaling treatments are rectified and complete wetting behavior is represented; however, quantitatively small, but unphysical residual nonanalyticities on the wetting side of the critical isotherm are smoothed out ``manually.'' Comparisons with the limited available observations are presented elsewhere but the theory invites new, searching experiments and simulations, e.g., for the vapor-liquid interfacial tension on the two sides of the critical endpoint isotherm for which an amplitude ratio $-3.25 \pm 0.05$ is predicted.Comment: 42 pages, 6 figures, to appear in Physical Review

Critical equation of state from the average action

The scaling form of the critical equation of state is computed for $O(N)$-symmetric models. We employ a method based on an exact flow equation for a coarse grained free energy. A suitable truncation is solved numerically.Comment: Latex, 8 pages, 2 uuencoded figure