Midlatitude stratosphere - troposphere exchange as diagnosed by MLS O3 and MOPITT CO assimilated fields

International audienceThis paper presents a comprehensive characterization of a very deep stratospheric intrusion which occurred over the British Isles on 15 August 2007. The signature of this event is diagnosed using ozonesonde measurements over Lerwick, UK (60.14 N, 1.19 W) and is also well characterized using meteorological analyses from the global operational weather prediction model of Météo-France, ARPEGE. Modelled as well as assimilated fields of both ozone (O3) and carbon monoxide (CO) have been used in order to better document this event. O3 and CO from Aura/MLS and Terra/MOPITT instruments, respectively, are assimilated into the three-dimensional chemical transport model MOCAGE of Météo-France using a variational 3-DFGAT (First Guess at Appropriate Time) method. The validation of O3 and CO assimilated fields is done using selfconsistency diagnostics and by comparison with independent observations such as MOZAIC (O3 and CO), AIRS (CO) and OMI (O3). It particularly shows in the upper troposphere and lower stratosphere region that the assimilated fields are closer to MOZAIC than the free model run. The O3 bias between MOZAIC and the analyses is −11.5 ppbv with a RMS of 22.4 ppbv and a correlation coefficient of 0.93, whereas between MOZAIC and the free model run, the corresponding values are 33 ppbv, 38.5 ppbv and 0.83, respectively. In the same way, for CO, the bias, RMS and correlation coefficient between MOZAIC and the analyses are −3.16 ppbv, 13 ppbv and 0.79, respectively, whereas between MOZAIC and the free model run, the corresponding values are 33 ppbv, 38.5 ppbv and 0.83, respectively. In the same way, for CO, the bias, RMS and correlation coefficient between MOZAIC and the analyses are −3.16 ppbv, 13 ppbv and 0.79, respectively, whereas between MOZAIC and the free model they are 6.3 ppbv, 16.6 ppbv and 0.71, respectively. The paper also presents a demonstration of the capability of O3 and CO assimilated fields to better describe a stratosphere-troposphere exchange (STE) event in comparison with the free run modelled O3 and CO fields. Although the assimilation of MLS data improves the distribution of O3 above the tropopause compared to the free model run, it is not sufficient to reproduce the STE event well. Assimilated MOPITT CO allows a better qualitative description of the stratospheric intrusion event. The MOPITT CO analyses appear more promising than the MLS O3 analyses in terms of their ability to capture a deep STE event. Therefore, the results of this study open the perspectives for using MOPITT CO in the STE studies

An unusual stratospheric ozone decrease in the Southern Hemisphere subtropics linked to isentropic air-mass transport as observed over Irene (25.5 S, 28.1 E) in mid-May 2002

International audienceA prominent ozone minimum of less than 240 Dobson Units (DU) was observed over Irene (25.5 S, 28.1 E), a subtropical site in the Southern Hemisphere, by the Total Ozone Mapping Spectrometer (TOMS) during May 2002 with an extremely low ozone value of less than 219DU recorded on 12 May, as compared to the climatological mean value of 249DU for May between 1999 and 2005. In this study, the vertical structure of this ozone minimum is examined using ozonesonde measurements performed over Irene on 15 May 2002, when the total ozone (as given by TOMS) was about 226DU. It is shown that this ozone minimum is of Antarctic polar origin with a low-ozone layer in the middle stratosphere above 625K (where the climatological ozone gradient points equatorward), and is of tropical origin with a low-ozone layer in the lower stratosphere between the 400-K and 450-K isentropic levels (where the climatological ozone gradient is reversed). The upper and lower depleted parts of the ozonesonde profile for 15 May are then respectively attributed to equatorward and poleward transport of low-ozone air toward the subtropics in the Southern Hemisphere. The tropical air moving over Irene and the polar one passing over the same area associated with enhanced planetary-wave activity are successfully simulated using the high-resolution advection contour model of Ertel's potential vorticity MIMOSA. The unusual distribution of ozone over Irene during May 2002 in the middle stratosphere is connected to the anomalously pre-conditioned structure of the polar vortex at that time of the year. The winter stratospheric wave driving leading to the ozone minimum is investigated by means of the Eliassen-Palm flux computed from the European Center for Medium-range Weather Forecasts (ECMWF) ERA40 reanalyses

Cadmium responses in Arabidopsis thaliana: glutathione metabolism and antioxidative defense system.

We investigated the effect of cadmium (Cd) on leaves of 3-week-old Arabidopsis thaliana with a particular interest on glutathione (GSH) production and consumption, and antioxidative defence. Plants were exposed to either 1 or 10 μMCd for 1 week. Several genes and correspondent proteins known to participate in the regulation of redox states in plants were analysed in Cd-stressed and unstressed plants. Cd induced a significant increase in the messenger RNA level of genes involved in GSH synthesis (gsh1 and gsh2) and phytochelatin synthase (pcs1). We observed a significant decrease of reduced GSH in Cd-treated plants. In parallel, an increase of phytochelatin (PC), predominantly PC2 was observed. Cd treatment increased the accumulation of glutathione disulphide (GSSG), keeping the GSH/GSSG ratio lower than in control plants. The accumulation of GSSG was accompanied by a decrease of the glutathione reductase (gr) transcript level, while the activities of GR and nicotinamide nucleotide phosphate-reducing enzymes were significantly enhanced. The antioxidative defence mechanism related to the ascorbate (AsA)-GSH cycle was studied in parallel. A general increase of reactive oxygen species scavenging enzymes such as ascorbate peroxidase, catalase or superoxide dismutase was observed. Our data suggest that the plants respond to Cd stress by the AsA-GSH defence network at both transcriptional and enzymatic level. Taken together, it appears that Arabidopsis plants exposed to 1 μMCd were able to adopt a new metabolic equilibrium, allowing them to cope with this metal. However, when exposed to 10 μMCd, loss of cellular redox homeostasis resulted in oxidative stress and toxicity. © Physiologia Plantarum 2006

Midlatitude stratosphere – troposphere exchange as diagnosed by MLS O₃ and MOPITT CO assimilated fields

This paper presents a comprehensive characterization of a very deep stratospheric intrusion which occurred over the British Isles on 15 August 2007. The signature of this event is diagnosed using ozonesonde measurements over Lerwick, UK (60.14° N, 1.19° W) and is also well characterized using meteorological analyses from the global operational weather prediction model of Météo-France, ARPEGE. Modelled as well as assimilated fields of both ozone (O3) and carbon monoxide (CO) have been used in order to better document this event. O3 and CO from Aura/MLS and Terra/MOPITT instruments, respectively, are assimilated into the three-dimensional chemical transport model MOCAGE of Météo-France using a variational 3-D-FGAT (First Guess at Appropriate Time) method. The validation of O3 and CO assimilated fields is done using self-consistency diagnostics and by comparison with independent observations such as MOZAIC (O3 and CO), AIRS (CO) and OMI (O3). It particularly shows in the upper troposphere and lower stratosphere region that the assimilated fields are closer to MOZAIC than the free model run. The O3 bias between MOZAIC and the analyses is −11.5 ppbv with a RMS of 22.4 ppbv and a correlation coefficient of 0.93, whereas between MOZAIC and the free model run, the corresponding values are 33 ppbv, 38.5 ppbv and 0.83, respectively. In the same way, for CO, the bias, RMS and correlation coefficient between MOZAIC and the analyses are −3.16 ppbv, 13 ppbv and 0.79, respectively, whereas between MOZAIC and the free model they are 6.3 ppbv, 16.6 ppbv and 0.71, respectively. The paper also presents a demonstration of the capability of O3 and CO assimilated fields to better describe a stratosphere-troposphere exchange (STE) event in comparison with the free run modelled O3 and CO fields. Although the assimilation of MLS data improves the distribution of O3 above the tropopause compared to the free model run, it is not sufficient to reproduce the STE event well. Assimilated MOPITT CO allows a better qualitative description of the stratospheric intrusion event. The MOPITT CO analyses appear more promising than the MLS O3 analyses in terms of their ability to capture a deep STE event. Therefore, the results of this study open the perspectives for using MOPITT CO in the STE studies

Laboratory biomarkers of COVID-19 disease severity and outcome: Findings from a developing country.

AimTo identify laboratory biomarkers that predict disease severity and outcome among COVID-19 patients admitted to the Millennium COVID-19 Care Center in Ethiopia.MethodsA retrospective cohort study was conducted among 429 COVID-19 patients who were on follow up from July to October 2020. Data was described using frequency tables. Robust Poisson regression model was used to identify predictors of COVID-19 severity where adjusted relative risk (ARR), P-value and 95 CI for ARR were used to test significance. Binary Logistic regression model was used to assess the presence of statistically significant association between the explanatory variables and COVID-19 outcome where adjusted odds ratio (AOR), P-value and 95%CI for AOR were used for testing significance.ResultsAmong the 429 patients studied, 182 (42.4%) had Severe disease at admission and the rest 247 (57.6%) had Non-severe disease. Regarding disease outcome, 45 (10.5%) died and 384 (89.5%) were discharged alive. Age group (ARR = 1.779, 95%CI = 1.405-2.252, p-value ConclusionsAssessing and monitoring the laboratory markers of WBC, NLR, SGOT, sodium and potassium levels at the earliest stage of the disease could have a considerable role in halting disease progression and death

Plant SILAC:stable-isotope labelling with amino acids of <em>Arabidopsis</em> seedlings for quantitative proteomics

Stable Isotope Labelling by Amino acids in Cell culture (SILAC) is a powerful technique for comparative quantitative proteomics, which has recently been applied to a number of different eukaryotic organisms. Inefficient incorporation of labelled amino acids in cell cultures of Arabidopsis thaliana has led to very limited use of SILAC in plant systems. We present a method allowing, for the first time, efficient labelling with stable isotope-containing arginine and lysine of whole Arabidopsis seedlings. To illustrate the utility of this method, we have combined the high labelling efficiency (>95%) with quantitative proteomics analyses of seedlings exposed to increased salt concentration. In plants treated for 7 days with 80 mM NaCl, a relatively mild salt stress, 215 proteins were identified whose expression levels changed significantly compared to untreated seedling controls. The 92 up-regulated proteins included proteins involved in abiotic stress responses and photosynthesis, while the 123 down-regulated proteins were enriched in proteins involved in reduction of oxidative stress and other stress responses, respectively. Efficient labelling of whole Arabidopsis seedlings by this modified SILAC method opens new opportunities to exploit the genetic resources of Arabidopsis and analyse the impact of mutations on quantitative protein dynamics in vivo