Crystal energy functions via the charge in types A and C

The Ram-Yip formula for Macdonald polynomials (at t=0) provides a statistic which we call charge. In types A and C it can be defined on tensor products of Kashiwara-Nakashima single column crystals. In this paper we prove that the charge is equal to the (negative of the) energy function on affine crystals. The algorithm for computing charge is much simpler and can be more efficiently computed than the recursive definition of energy in terms of the combinatorial R-matrix.Comment: 25 pages; 1 figur

A Feasibility Study of a Transfer of Federal Lands: Assessing the Triple Bottom Line

reportThis feasibility study identifies various aspects of the proposed transfer of public federal lands to individual states by characterizing the most significant challenges that the transfer entails for civil and environmental engineers

The Uinta Express pipeline: a comprehensive research report conducted by students enrolled in CvEEN 3100 technical communications

reportThe Uinta Express Pipeline is a proposed common carrier pipeline which would transport waxy crude oil extracted from the Uinta Basin in northeastern Utah to area refineries in North Salt Lake City. The proposed project would consist of a 12-inch, buried, insulated, carbon steel pipeline supported by numerous ancillary facilities along its approximately 135-mile long route. Tesoro Refining and Marketing LLC, the principle organization sponsoring research and development of the Uinta Express Pipeline, claims that once operational it will have the capacity to transport up to 60,000 barrels of unrefined waxy crude oil daily, thereby removing an estimated 250 semi tanker trucks from Utah's highways each day. This Report, compiled by University of Utah students enrolled in CvEEN 3100: Technical Communications, thoroughly interrogates the proposed pipeline with current research and specification data. Students enrolled in CvEEN 3100 during the Fall 2014 semester identified various aspects of the proposed project that presented the most significant challenges from a civil and environmental perspective. Students worked in teams to compile feasibility reports, which comprise the individual chapters. Teams coordinated with one another to ensure that research content, images, and technical data discussed in one chapter did not overlap with material in other chapters

Asymmetric function theory

The classical theory of symmetric functions has a central position in algebraic combinatorics, bridging aspects of representation theory, combinatorics, and enumerative geometry. More recently, this theory has been fruitfully extended to the larger ring of quasisymmetric functions, with corresponding applications. Here, we survey recent work extending this theory further to general asymmetric polynomials.Comment: 36 pages, 8 figures, 1 table. Written for the proceedings of the Schubert calculus conference in Guangzhou, Nov. 201

Sustained Na⁺/H⁺ exchanger activation promotes gliotransmitter release from reactive hippocampal astrocytes following oxygen-glucose deprivation

Hypoxia ischemia (HI)-related brain injury is the major cause of long-term morbidity in neonates. One characteristic hallmark of neonatal HI is the development of reactive astrogliosis in the hippocampus. However, the impact of reactive astrogliosis in hippocampal damage after neonatal HI is not fully understood. In the current study, we investigated the role of Na +/H+ exchanger isoform 1 (NHE1) protein in mouse reactive hippocampal astrocyte function in an in vitro ischemia model (oxygen/glucose deprivation and reoxygenation, OGD/REOX). 2 h OGD significantly increased NHE1 protein expression and NHE1-mediated H+ efflux in hippocampal astrocytes. NHE1 activity remained stimulated during 1-5 h REOX and returned to the basal level at 24 h REOX. NHE1 activation in hippocampal astrocytes resulted in intracellular Na+ and Ca2+ overload. The latter was mediated by reversal of Na+/Ca2+ exchange. Hippocampal astrocytes also exhibited a robust release of gliotransmitters (glutamate and pro-inflammatory cytokines IL-6 and TNFα) during 1-24 h REOX. Interestingly, inhibition of NHE1 activity with its potent inhibitor HOE 642 not only reduced Na+ overload but also gliotransmitter release from hippocampal astrocytes. The noncompetitive excitatory amino acid transporter inhibitor TBOA showed a similar effect on blocking the glutamate release. Taken together, we concluded that NHE1 plays an essential role in maintaining H + homeostasis in hippocampal astrocytes. Over-stimulation of NHE1 activity following in vitro ischemia disrupts Na+ and Ca2+ homeostasis, which reduces Na+-dependent glutamate uptake and promotes release of glutamate and cytokines from reactive astrocytes. Therefore, blocking sustained NHE1 activation in reactive astrocytes may provide neuroprotection following HI. © 2014 Cengiz et al

Two stochastic processes shape diverse senescence patterns in a single-cell organism

Despite advances in aging research, a multitude of aging models, and empirical evidence for diverse senescence patterns, understanding of the biological processes that shape senescence is lacking. We show that senescence of an isogenic Escherichia coli bacterial population results from two stochastic processes. The first process is a random deterioration process within the cell, such as generated by random accumulation of damage. This primary process leads to an exponential increase in mortality early in life followed by a late age mortality plateau. The second process relates to the stochastic asymmetric transmission at cell fission of an unknown factor that influences mortality. This secondary process explains the difference between the classical mortality plateaus detected for young mothers' offspring and the near nonsenescence of old mothers' offspring as well as the lack of a mother-offspring correlation in age at death. We observed that lifespan is predominantly determined by underlying stochastic stage dynamics. Surprisingly, our findings support models developed for metazoans that base their arguments on stage-specific actions of alleles to understand the evolution of senescence. We call for exploration of similar stochastic influences that shape aging patterns beyond simple organisms.</p

Closure relations during the plateau emission of Swift GRBs and the fundamental plane

The Neil Gehrels Swift observatory observe Gamma-Ray bursts (GRBs) plateaus in X-rays. We test the reliability of the closure relations through the fireball model when dealing with the GRB plateau emission. We analyze 455 X-ray lightcurves (LCs) collected by \emph{Swift} from 2005 (January) until 2019 (August) for which the redshift is both known and unknown using the phenomenological Willingale 2007 model. Using these fits, we analyze the emission mechanisms and astrophysical environments of these GRBs through the closure relations within the time interval of the plateau emission. Finally, we test the 3D fundamental plane relation (Dainotti relation) which connects the prompt peak luminosity, the time at the end of the plateau (rest-frame), and the luminosity at that time, on the GRBs with redshift, concerning groups determined by the closure relations. This allows us to check if the intrinsic scatter \sigma_{int} of any of these groups is reduced compared to previous literature. The most fulfilled environments for the electron spectral distribution, p>2, are Wind Slow Cooling (SC) and ISM Slow Cooling for cases in which the parameter q, which indicates the flatness of the plateau emission and accounts for the energy injection, is =0 and =0.5, respectively, both in the cases with known and unknown redshifts. We also find that for the sGRBs All ISM Environments with $q=0$ have the smallest \sigma_{int}=0.04 \pm 0.15 in terms of the fundamental plane relation holding a probability of occurring by chance of p=0.005. We have shown that the majority of GRBs presenting the plateau emission fulfil the closure relations, including the energy injection, with a particular preference for the Wind SC environment. The subsample of GRBs that fulfil given relations can be used as possible standard candles and can suggest a way to reduce the intrinsic scatter of these studied relationships.Comment: 44 pages, 23 figures; Accepted to the PASJ to be published soo

Gamma-ray burst redshift estimation using machine learning and the associated web app

Context. Gamma-ray bursts (GRBs), which have been observed at redshifts as high as 9.4, could serve as valuable probes for investigating the distant Universe. However, using them in this manner necessitates an increase in the number of GRBs with determined redshifts, as currently only 12% of them have known redshifts due to observational biases. Aims. We aim to address the shortage of GRBs with measured redshifts to enable full realization of their potential as valuable cosmological probes. Methods. Following our previous approach, in this work we take a further step to overcome this issue by adding 30 more GRBs to our ensemble supervised machine learning training sample, representing an increase of 20%, which will help us obtain more accurate pseudo-redshifts. In addition, we have built a freely accessible and user-friendly web application that infers the redshift of long GRBs (LGRBs) with plateau emission using our machine learning model. The web app is the first of its kind for such a study and will allow the community to obtain pseudo-redshifts by entering the GRB parameters into the app. Results. Through our machine learning model, we successfully estimated redshifts for 276 LGRBs using X-ray afterglow parameters detected by the Neil Gehrels Swift Observatory and increased the sample of LGRBs with known redshifts by 110%. We also performed Monte Carlo simulations to demonstrate the future applicability of this research. Conclusions. The results presented in this work will enable the community to increase the sample of GRBs with known pseudoredshifts. This can help address many outstanding issues, such as GRB formation rate, luminosity function, and the true nature of low-luminosity GRBs, and it can enable the application of GRBs as standard candles

A Kinase-Phosphatase Network that Regulates Kinetochore-Microtubule Attachments and the SAC

The KMN network (for KNL1, MIS12 and NDC80 complexes) is a hub for signalling at the outer kinetochore. It integrates the activities of two kinases (MPS1 and Aurora B) and two phosphatases (PP1 and PP2A-B56) to regulate kinetochore-microtubule attachments and the spindle assembly checkpoint (SAC). We will first discuss each of these enzymes separately, to describe how they are regulated at kinetochores and why this is important for their primary function in controlling either microtubule attachments or the SAC. We will then discuss why inhibiting any one of them individually produces secondary effects on all the others. This cross-talk may help to explain why all enzymes have been linked to both processes, even though the direct evidence suggests they each control only one. This chapter therefore describes how a network of kinases and phosphatases work together to regulate two key mitotic processes.</p

Intrinsic Folding Properties of the HLA-B27 Heavy Chain Revealed by Single Chain Trimer Versions of Peptide-Loaded Class I Major Histocompatibility Complex Molecules

Peptide-loaded Major Histocompatibility Complex (pMHC) class I molecules can be expressed in a single chain trimeric (SCT) format, composed of a specific peptide fused to the light chain beta-2 microglobulin (β2m) and MHC class I heavy chain (HC) by flexible linker peptides. pMHC SCTs have been used as effective molecular tools to investigate cellular immunity and represent a promising vaccine platform technology, due to their intracellular folding and assembly which is apparently independent of host cell folding pathways and chaperones. However, certain MHC class I HC molecules, such as the Human Leukocyte Antigen B27 (HLA-B27) allele, present a challenge due to their tendency to form HC aggregates. We constructed a series of single chain trimeric molecules to determine the behaviour of the HLA-B27 HC in a scenario that usually allows for efficient MHC class I molecule folding. When stably expressed, a pMHC SCT incorporating HLA-B27 HC formed chaperone-bound homodimers within the endoplasmic reticulum (ER). A series of HLA-B27 SCT substitution mutations revealed that the F pocket and antigen binding groove regions of the HLA-B27 HC defined the folding and dimerisation of the single chain complex, independently of the peptide sequence. Furthermore, pMHC SCTs can demonstrate variability in their association with the intracellular antigen processing machinery