Open Science principles for accelerating trait-based science across the Tree of Life

Synthesizing trait observations and knowledge across the Tree of Life remains a grand challenge for biodiversity science. Species traits are widely used in ecological and evolutionary science, and new data and methods have proliferated rapidly. Yet accessing and integrating disparate data sources remains a considerable challenge, slowing progress toward a global synthesis to integrate trait data across organisms. Trait science needs a vision for achieving global integration across all organisms. Here, we outline how the adoption of key Open Science principles-open data, open source and open methods-is transforming trait science, increasing transparency, democratizing access and accelerating global synthesis. To enhance widespread adoption of these principles, we introduce the Open Traits Network (OTN), a global, decentralized community welcoming all researchers and institutions pursuing the collaborative goal of standardizing and integrating trait data across organisms. We demonstrate how adherence to Open Science principles is key to the OTN community and outline five activities that can accelerate the synthesis of trait data across the Tree of Life, thereby facilitating rapid advances to address scientific inquiries and environmental issues. Lessons learned along the path to a global synthesis of trait data will provide a framework for addressing similarly complex data science and informatics challenges

Trends and outcome of neoadjuvant treatment for rectal cancer: A retrospective analysis and critical assessment of a 10-year prospective national registry on behalf of the Spanish Rectal Cancer Project

Introduction: Preoperative treatment and adequate surgery increase local control in rectal cancer. However, modalities and indications for neoadjuvant treatment may be controversial. Aim of this study was to assess the trends of preoperative treatment and outcomes in patients with rectal cancer included in the Rectal Cancer Registry of the Spanish Associations of Surgeons. Method: This is a STROBE-compliant retrospective analysis of a prospective database. All patients operated on with curative intention included in the Rectal Cancer Registry were included. Analyses were performed to compare the use of neoadjuvant/adjuvant treatment in three timeframes: I)2006–2009; II)2010–2013; III)2014–2017. Survival analyses were run for 3-year survival in timeframes I-II. Results: Out of 14, 391 patients, 8871 (61.6%) received neoadjuvant treatment. Long-course chemo/radiotherapy was the most used approach (79.9%), followed by short-course radiotherapy ± chemotherapy (7.6%). The use of neoadjuvant treatment for cancer of the upper third (15-11 cm) increased over time (31.5%vs 34.5%vs 38.6%, p = 0.0018). The complete regression rate slightly increased over time (15.6% vs 16% vs 18.5%; p = 0.0093); the proportion of patients with involved circumferential resection margins (CRM) went down from 8.2% to 7.3%and 5.5% (p = 0.0004). Neoadjuvant treatment significantly decreased positive CRM in lower third tumors (OR 0.71, 0.59–0.87, Cochrane-Mantel-Haenszel P = 0.0008). Most ypN0 patients also received adjuvant therapy. In MR-defined stage III patients, preoperative treatment was associated with significantly longer local-recurrence-free survival (p < 0.0001), and cancer-specific survival (p < 0.0001). The survival benefit was smaller in upper third cancers. Conclusion: There was an increasing trend and a potential overuse of neoadjuvant treatment in cancer of the upper rectum. Most ypN0 patients received postoperative treatment. Involvement of CRM in lower third tumors was reduced after neoadjuvant treatment. Stage III and MRcN + benefited the most

About blood products

La transfusión es una necesidad permanente, y la amplitud con la que es utilizada exige que deba garantizarse su calidad y seguridad para evitar, en particular, la transmisión de enfermedades. Ha de ser un tratamiento personalizado. Las funciones de enfermería son de especial importancia así como los cuidados que se requieren. El objetivo del presente estudio es conocer la variabilidad práctica de los profesionales de enfermería del centro hospitalario, sobre la extracción de muestras pretransfusionales y la administración de hemoderivados. Para lo cual se realizó el envío de un cuestionario para su posterior cumplimentación en formato online, que garantizaba el total anonimato. Han contestado a la encuesta 180 profesionales. El 74.4% de los enfermeros dice que la transfusión de hemoderivados sólo se puede administrar de forma simultánea con suero fisiológico. Un 56.1% refiere que cada concentrado transfundido de hematíes aumenta la hemoglobina en 1gr/dl. Hemos encontrado un consenso entre las recomendaciones científicas y las contestaciones realizadas por los diferentes profesionales, hecho que se reafirma con el escaso índice de notificaciones adversas que se han registrado en nuestro trabajo. La elaboración e implantación de una guía de actuación en cuanto a la administración de hemoderivados se hace imprescindibleABSTRACT Transfusion is an ongoing need, and as widely used it requires that quality and safety should be ensured to avoid, in particular, the transmission of diseases. It must be a custom treatment. Nursing roles are particularly important as the care required. The aim of this study is to determine the variability of nursing skills on the extraction of pre-transfusion samples and administration of blood products. Anonymous questionnaires were sent out on-line for subsequent filling and 180 nursing professionals participated. 74.4% of nurses said that blood transfusion can only be administered simultaneously with normal saline, 56.1% reported that each transfused packed red blood cells increases hemoglobin 1 g / dl. We found a consensus among the scientific recommendations and the responses made by different professionals, a fact that is confirmed by the low rate of adverse notifications registered in our study. The development and implementation of policy guidance regarding the administration of blood products is essential

Blood cultures ... What they tell you and what you do

Objetivo: Objetivo principal: Conocer la variabilidad práctica de los enfermeros/as (DUE´s) del Hospital General Nuestra Señora del Prado, sobre la técnica para la extracción de hemocultivo. Objetivos específicos: Determinar las condiciones de asepsia/ esterilidad de la técnica. Establecer la utilización (desinfección, orden de llenado, volumen, cambio de aguja) de los frascos de hemocultivos. Método: Estudio descriptivo transversal realizado en el Hospital General Nuestra Señora del Prado. Ha consistido en la entrega de un cuestionario para autocumplimentación a los profesionales de enfermería, donde se han incluido variantes tanto cuantitativas como cualitativas. Resultados: Se han recogido 52,9% encuestas de los 363 DUE´s del centro hospitalario, con una experiencia profesional media de 12,9 años [DE±7,9]. El 57,8% cree que no es necesario técnica estéril para el procedimiento. 94,7% utiliza un único antiséptico. 78,6% afirman que en la extracción de acceso venoso central desecha los primeros 10cc que extrae. Conclusiones: Consideramos un alto índice de respuesta, ya que es superior al 40% para cuestionarios autocumplimentados. Hemos observado que la mayoría de DUE´s utilizan técnica aséptica y en los protocolos estudiados no existe un consenso entre la utilización de técnica estéril y aséptica. Este estudio nos revela que la mayoría de los Enfermería Global Nº 26 Abril 2012 Página 147 DUE´s utilizan un único antiséptico, sin embargo la mayoría de los protocolos recomiendan la utilización primero de alcohol y luego povidona yodada para la desinfección de la piel.ABSTRACT Aims: Main aim: To ascertain differences in nurses at the Hospital General Nuestra Señora del Prado, in blood extraction and blood culture techniques. Specific aims: To determine the asepsis/sterility conditions of the technique; to establish the use (disinfection, filling order, volume, needle change) of the blood culture vials. Method: Transversal descriptive study made at the Hospital General Nuestra Señora del Prado. A self-completion questionnaire including quantitative and qualitative variants was delivered to nursing professionals. Results: 52.9% of the questionnaires were collected from the 363 DUE´s at the hospital. Mena working experience was 12.9 years [DE±7,9]. 57,8% believe sterile technique for the procedure was not necessary. 94.7% use a single antiseptic. 78.6% stated that they discard the first 10 cc extracted from the central vein. Conclusions: We consider that the response is high, with over 40% of the questionnaires being completed. We observed that most DUE´s use aseptic techniques and in the protocols studied there was no consensus about the use of sterilization and septic techniques. The study reveals that the majority of the DUE´s use a single antiseptic, even though most protocols recommend the use of alcohol, followed by povidone.iodine to disinfect the skin

Research priorities for the conservation and sustainable governance of Andean Forest landscapes

The long-term survival of Andean forest landscapes (AFL) and of their capacity to contribute to sustainable development in a context of global change requires integrated adaptation and mitigation responses informed by a thorough understanding of the dynamic and complex interactions between their ecological and social components. This article proposes a research agenda that can help guide AFL research efforts for the next 15 years. The agenda was developed between July 2015 and June 2016 through a series of workshops in Ecuador, Peru, and Switzerland and involved 48 researchers and development experts working on AFL from different disciplinary perspectives. Based on our review of current research and identification of pressing challenges for the conservation and sustainable governance of AFL, we propose a conceptual framework that draws on sustainability sciences and social–ecological systems research, and we identify a set of high-priority research goals and objectives organized into 3 broad categories: systems knowledge, target knowledge, and transformation knowledge. This paper is intended to be a reference for a broad array of actors engaged in policy, research, and implementation in the Andean region. We hope it will trigger collaborative research initiatives for the continued conservation and sustainable governance of AFL

Bamboo phenology and life cycle drive seasonal and long‐term functioning of Amazonian bamboo‐dominated forests

Bamboo‐dominated forests (BDF) extend over large areas in the drought‐prone Southwestern Amazon, yet little is known about the dynamics of these ecosystems. Here, we investigate the hypothesis that bamboo modulates large‐scale ecosystem dynamics through competition with coexisting trees for water. We examined spatio‐temporal patterns of remotely sensed metrics (Enhanced Vegetation Index [EVI], Normalized Difference Moisture Index [NDMI]) in >300 Landsat images as proxies for canopy leaf phenology and water content at two time scales: (1) a complete bamboo life cycle (~28 years), and (2) the seasonal cycle; and at two spatial scales: (a) comparing adjacent areas of BDF vs. Terra‐firme forests (TFF) to investigate regional dynamics, and (b) comparing the vegetation classes of bamboo, trees in BDF, and trees in TFF to investigate the effects of bamboo on coexisting trees. At the regional scale, BDF showed higher EVI (leaf area density) and lower NDMI (water content) than nearby TFF but these differences disappeared as bamboo died, suggesting a strong influence of bamboo life stage in the functioning of these forests. BDF seasonal cycle showed a bimodal EVI pattern as trees and bamboos had asynchronized leaf production peaks. At the scale of vegetation classes, trees in BDF showed lower NDMI (i.e. water content) than trees in TFF except after bamboo mortality, indicating a release from competition with bamboo for water. Canopy water content of trees in BDF was also reduced during bamboo dry‐season greening (increased EVI ~ leaf production) due to increased water demands. Nevertheless, long‐term and seasonal phenology of trees in BDF did not differ from that of trees in TFF suggesting a potential selection for drought‐tolerant trees in BDF. Synthesis. Bamboo‐dominated forests have received less attention than other Amazonian forests and their functional dynamics are commonly ignored or misinterpreted. Using remote sensing to characterize forest phenology and water content, we show the distinctive seasonal and long‐term dynamics of BDF and coexisting trees and the importance of bamboo competition for water in shaping this ecosystem. Our results suggest a potential selection for drought‐tolerant trees in BDF since they maintain the same EVI as trees in bamboo‐free forests but with lower water content. A better characterization of BDF and their cyclical dynamics is crucial for accurately interpreting Amazonian forests' responses to extreme climatic events such as high temperatures and droughts. Resumen Los bosques dominados por bambú (BDB/BDF) se extienden a lo largo de grandes áreas del Suroeste Amazónico las cuales son propensas a la sequía; sin embargo, se conoce muy poco sobre la dinámica de estos ecosistemas. En este artículo investigamos la hipótesis de que el bambú moldea la dinámica a gran escala de este ecosistema mediante la competencia por agua con los árboles coexistentes. Examinamos patrones espacio‐temporales de índices obtenidos mediante el uso de sensores remotos (Enhanced Vegetation Index, [EVI], Normalized Difference Moisture Index [NDMI]) en >300 imágenes Landsat como aproximaciones a la fenología de las hojas del dosel y su contenido de agua a dos escalas temporales: (1) un ciclo de vida completo del bambú (~28 años), y (2) el ciclo estacional; y a dos escalas espaciales: (a) comparando áreas adyacentes de BDF vs bosques de Terra‐firme (BTF/TFF) para investigar dinámicas regionales, y (b) comparando las clases de vegetación de bambú, árboles en BDF y árboles en TFF independientemente, para investigar los efectos del bambú en los árboles con los que coexiste. A escala regional, los BDF mostraron EVI más alto (densidad de área foliar) y NDMI más bajo (contenido de agua) que los TFF cercanos pero estas diferencias desaparecieron cuando el bambú murió, sugiriendo una fuerte influencia del estadío de vida del bambú en el funcionamiento de estos bosques. Los BDF presentan un ciclo estacional con un patrón de EVI bimodal dado que árboles y bambús tienen picos de producción foliar asincrónicos. A escala de clases de vegetación, los árboles en BDF mostraron NDMI más bajo (contenido de agua) que los árboles en TFF excepto después de la mortalidad del bambú, indicando un alivio en la competencia por agua con el bambú. El contenido de agua en el dosel de los árboles en BDF también se redujo durante el reverdecimiento del bambú en la estación seca (incremento de EVI ~ producción de hojas) debido al incremento en la demanda de agua. No obstante, la fenología de los árboles en BDF no difiere de la de árboles en TFF ni a largo plazo, ni en el ciclo estacional sugiriendo una posible selección a favor de árboles tolerantes a la sequía en BDF. Síntesis. Los bosques dominados por bambú han recibido menos atención que otros bosques amazónicos y su funcionamiento y dinámica son comúnmente ignorados o malinterpretados. Usando sensores remotos para caracterizar la fenología de los bosques y su contenido de agua, mostramos la distintiva dinámica estacional y a largo plazo de los BDF y los árboles que coexisten en estos bosques. También demostramos la importancia de la competencia por agua entre bambú y árboles en el moldeamiento de este ecosistema. Nuestros resultados sugieren una posible selección a favor de especies tolerantes a la sequía en BDF ya que mantienen el mismo EVI que los árboles en bosques sin bambú, pero con menor contenido de agua. Una mejor caracterización de los bosques dominados por bambú y su dinámica cíclica es crucial para una correcta interpretación de la respuesta de los bosques amazónicos a los eventos climáticos extremos como los picos de temperatura y las sequías. Bamboo‐dominated forests have received less attention than other Amazonian forests and their functional dynamics are commonly ignored or misinterpreted. Using remote sensing to characterize forest phenology and water content, we show the distinctive seasonal and long‐term dynamics of BDF and coexisting trees and the importance of bamboo competition for water in shaping this ecosystem. Our results suggest a potential selection for drought‐tolerant trees in BDF since they maintain the same EVI as trees in bamboo‐free forests but with lower water content. A better characterization of BDF and their cyclical dynamics is crucial for accurately interpreting Amazonian forests' responses to extreme climatic events such as high temperatures and droughts

Litter decomposition rates across tropical montane and lowland forests are controlled foremost by climate

The “hierarchy of factors” hypothesis states that decomposition rates are controlled primarily by climatic, followed by biological and soil variables. Tropical montane forests (TMF) are globally important ecosystems, yet there have been limited efforts to provide a biome-scale characterization of litter decomposition. We designed a common litter decomposition experiment replicated in 23 tropical montane sites across the Americas, Asia, and Africa and combined these results with a previous study of 23 sites in tropical lowland forests (TLF). Specifically, we investigated (1) spatial heterogeneity in decomposition, (2) the relative importance of biological factors that affect leaf and wood decomposition in TMF, and (3) the role of climate in determining leaf litter decomposition rates within and across the TMF and TLF biomes. Litterbags of two mesh sizes containing Laurus nobilis leaves or birchwood popsicle sticks were spatially dispersed and incubated in TMF sites, for 3 and 7 months on the soil surface and at 10–15 cm depth. The within-site replication demonstrated spatial variability in mass loss. Within TMF, litter type was the predominant biological factor influencing decomposition (leaves > wood), with mesh and burial effects playing a minor role. When comparing across TMF and TLF, climate was the predominant control over decomposition, but the Yasso07 global model (based on mean annual temperature and precipitation) only modestly predicted decomposition rate. Differences in controlling factors between biomes suggest that TMF, with their high rates of carbon storage, must be explicitly considered when developing theory and models to elucidate carbon cycling rates in the tropics.Fil: Ostertag, Rebecca. University of Hawaii at Manoa; Estados UnidosFil: Restrepo, Carla. Universidad de Puerto Rico; Puerto RicoFil: Dalling, James W.. University of Illinois at Urbana; Estados UnidosFil: Martin, Patrick H.. University of Denver.; Estados UnidosFil: Abiem, Iveren. No especifíca;Fil: Aiba, Shinichiro. Hokkaido University; JapónFil: Alvarez Dávila, Esteban. No especifíca;Fil: Aragón, Myriam Roxana. Universidad Nacional de Tucumán. Instituto de Ecología Regional. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Ecología Regional; ArgentinaFil: Ataroff, Michelle. Universidad de los Andes; ColombiaFil: Chapman, Hazel. University of Canterbury; Nueva ZelandaFil: Cueva Agila, Augusta Y.. Pontificia Universidad Católica del Ecuador; EcuadorFil: Fadrique, Belen. University of Leeds; Reino UnidoFil: Fernandez, Romina Daiana. Universidad Nacional de Tucumán. Instituto de Ecología Regional. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Ecología Regional; ArgentinaFil: González, Grizelle. No especifíca;Fil: Gotsch, Sybil G.. No especifíca;Fil: Poma López, Laura Nohemy. Universidad Nacional de Loja; EcuadorFil: Tobón, Conrado. Universidad Nacional de Colombia; ColombiaFil: Williams, Cameron B.. No especifíca