Enhanced Eshelby twist on thin wurtzite InP nanowires and measurement of local crystal rotation

We have performed a detailed study of the lattice distortions of InP wurtzite nanowires containing an axial screw dislocation. Eshelby predicted that this kind of system should show a crystal rotation due to the dislocation induced torque. We have measured the twisting rate and the dislocation Burgers vector on individual wires, revealing that nanowires with a 10-nm radius have a twist up to 100% larger than estimated from elasticity theory. The strain induced by the deformation has a Mexican-hat-like geometry, which may create a tube-like potential well for carriers

Constraints on the pMSSM from LAT Observations of Dwarf Spheroidal Galaxies

We examine the ability for the Large Area Telescope (LAT) to constrain Minimal Supersymmetric Standard Model (MSSM) dark matter through a combined analysis of Milky Way dwarf spheroidal galaxies. We examine the Lightest Supersymmetric Particles (LSPs) for a set of ~71k experimentally valid supersymmetric models derived from the phenomenological-MSSM (pMSSM). We find that none of these models can be excluded at 95% confidence by the current analysis; nevertheless, many lie within the predicted reach of future LAT analyses. With two years of data, we find that the LAT is currently most sensitive to light LSPs (m_LSP < 50 GeV) annihilating into tau-pairs and heavier LSPs annihilating into b-bbar. Additionally, we find that future LAT analyses will be able to probe some LSPs that form a sub-dominant component of dark matter. We directly compare the LAT results to direct detection experiments and show the complementarity of these search methods.Comment: 24 pages, 9 figures, submitted to JCA

4-Dimensional BF Theory as a Topological Quantum Field Theory

Starting from a Lie group G whose Lie algebra is equipped with an invariant nondegenerate symmetric bilinear form, we show that 4-dimensional BF theory with cosmological term gives rise to a TQFT satisfying a generalization of Atiyah's axioms to manifolds equipped with principal G-bundle. The case G = GL(4,R) is especially interesting because every 4-manifold is then naturally equipped with a principal G-bundle, namely its frame bundle. In this case, the partition function of a compact oriented 4-manifold is the exponential of its signature, and the resulting TQFT is isomorphic to that constructed by Crane and Yetter using a state sum model, or by Broda using a surgery presentation of 4-manifolds.Comment: 15 pages in LaTe

Link Invariants of Finite Type and Perturbation Theory

The Vassiliev-Gusarov link invariants of finite type are known to be closely related to perturbation theory for Chern-Simons theory. In order to clarify the perturbative nature of such link invariants, we introduce an algebra V_infinity containing elements g_i satisfying the usual braid group relations and elements a_i satisfying g_i - g_i^{-1} = epsilon a_i, where epsilon is a formal variable that may be regarded as measuring the failure of g_i^2 to equal 1. Topologically, the elements a_i signify crossings. We show that a large class of link invariants of finite type are in one-to-one correspondence with homogeneous Markov traces on V_infinity. We sketch a possible application of link invariants of finite type to a manifestly diffeomorphism-invariant perturbation theory for quantum gravity in the loop representation.Comment: 11 page

High-throughput screening of cellulase F mutants from multiplexed plasmid sets using an automated plate assay on a functional proteomic robotic workcell

<p>Abstract</p> <p>Background</p> <p>The field of plasmid-based functional proteomics requires the rapid assay of proteins expressed from plasmid libraries. Automation is essential since large sets of mutant open reading frames are being cloned for evaluation. To date no integrated automated platform is available to carry out the entire process including production of plasmid libraries, expression of cloned genes, and functional testing of expressed proteins.</p> <p>Results</p> <p>We used a functional proteomic assay in a multiplexed setting on an integrated plasmid-based robotic workcell for high-throughput screening of mutants of cellulase F, an endoglucanase from the anaerobic fungus <it>Orpinomyces </it>PC-2. This allowed us to identify plasmids containing optimized clones expressing mutants with improved activity at lower pH. A plasmid library of mutagenized clones of the <it>celF </it>gene with targeted variations in the last four codons was constructed by site-directed PCR mutagenesis and transformed into <it>Escherichia coli</it>. A robotic picker integrated into the workcell was used to inoculate medium in a 96-well deep well plate, combining the transformants into a multiplexed set in each well, and the plate was incubated on the workcell. Plasmids were prepared from the multiplexed culture on the liquid handler component of the workcell and used for <it>in vitro </it>transcription/translation. The multiplexed expressed recombinant proteins were screened for improved activity and stability in an azo-carboxymethylcellulose plate assay. The multiplexed wells containing mutants with improved activity were identified and linked back to the corresponding multiplexed cultures stored in glycerol. Spread plates were prepared from the glycerol stocks and the workcell was used to pick single colonies from the spread plates, prepare plasmid, produce recombinant protein, and assay for activity. The screening assay and subsequent deconvolution of the multiplexed wells resulted in identification of improved CelF mutants and corresponding optimized clones in expression-ready plasmids.</p> <p>Conclusion</p> <p>The multiplex method using an integrated automated platform for high-throughput screening in a functional proteomic assay allows rapid identification of plasmids containing optimized clones ready for use in subsequent applications including transformations to produce improved strains or cell lines.</p

Screening of endoglucanase-producing bacteria in the saline rhizosphere of Rhizophora mangle.

Abstract: In screening the culturable endoglucanase-producing bacteria in the rhizosphere of Rhizophora mangle, we found a prevalence of genera Bacillus and Paenibacillus. These bacteria revealed different activities in endoglucolysis and biofilm formation when exposed to specific NaCl concentrations, indicating modulated growth under natural variations in mangrove salinity

A Monte-Carlo study of the AdS/CFT correspondence: an exploration of quantum gravity effects

In this paper we study the AdS/CFT correspondence for N=4 SYM with gauge group U(N), compactified on S^3 in four dimensions using Monte-Carlo techniques. The simulation is based on a particular reduction of degrees of freedom to commuting matrices of constant fields, and in particular, we can write the wave functions of these degrees of freedom exactly. The square of the wave function is equivalent to a probability density for a Boltzman gas of interacting particles in six dimensions. From the simulation we can extract the density particle distribution for each wave function, and this distribution can be interpreted as a special geometric locus in the gravitational dual. Studying the wave functions associated to half-BPS giant gravitons, we are able to show that the matrix model can measure the Planck scale directly. We also show that the output of our simulation seems to match various theoretical expectations in the large N limit and that it captures 1/N effects as statistical fluctuations of the Boltzman gas with the expected scaling. Our results suggest that this is a very promising approach to explore quantum corrections and effects in gravitational physics on AdS spaces.Comment: 40 pages, 7 figures, uses JHEP. v2: references adde