427 research outputs found
Application of avalanche photodiodes as a readout for scintillator tile-fiber systems
The application of reach-through avalanche photodiodes (R'APD) as a
photodetector for scintillator tiles has been investigated. The light collected
by WLS fibers (0.84mm and 1mm diameter) embedded in the scintillator has been
transmited to the 0.5mm2 active surface of APD by clear optical fibers and
optical connectors. A low noise charge sensitive preamplifier (approximately
400 electrons equivalent noise charge) has been used to gain the photodiode
signal. Various configurations of tile-fibre systems, suitable for CMS and LHCb
experiments at LHC have been studied using cosmic muons and muon beam at SPS at
CERN. In order to optimize the performance of APD, measurments in the
temperature range from -10C to +25C have been done. The MIP detection
efficiency and electron/MIP separation have been estimated in order to
determine applicability of the readout for LHCb preshower.Comment: 20 pages,13 figure
HAMAP in 2015: updates to the protein family classification and annotation system.
HAMAP (High-quality Automated and Manual Annotation of Proteins-available at http://hamap.expasy.org/) is a system for the automatic classification and annotation of protein sequences. HAMAP provides annotation of the same quality and detail as UniProtKB/Swiss-Prot, using manually curated profiles for protein sequence family classification and expert curated rules for functional annotation of family members. HAMAP data and tools are made available through our website and as part of the UniRule pipeline of UniProt, providing annotation for millions of unreviewed sequences of UniProtKB/TrEMBL. Here we report on the growth of HAMAP and updates to the HAMAP system since our last report in the NAR Database Issue of 2013. We continue to augment HAMAP with new family profiles and annotation rules as new protein families are characterized and annotated in UniProtKB/Swiss-Prot; the latest version of HAMAP (as of 3 September 2014) contains 1983 family classification profiles and 1998 annotation rules (up from 1780 and 1720). We demonstrate how the complex logic of HAMAP rules allows for precise annotation of individual functional variants within large homologous protein families. We also describe improvements to our web-based tool HAMAP-Scan which simplify the classification and annotation of sequences, and the incorporation of an improved sequence-profile search algorithm
A measurement of from the Gross-Llewellyn Smith Sum Rule
We extract a set of values for the Gross-Llewellyn Smith sum rule at
different values of 4-momentum transfer squared (), by combining revised
CCFR neutrino data with data from other neutrino deep-inelastic scattering
experiments for . A comparison with the order
theoretical predictions yields a determination of
at the scale of the Z-boson mass of . This measurement
provides a new and useful test of perturbative QCD at low , because of the
low uncertainties in the higher order calculations.Comment: 4 pages, 4 figure
Neutrino Interactions In Oscillation Experiments
We calculate neutrino induced cross-sections relevant for oscillation
experiments, including the -lepton threshold for quasi-elastic, resonance
and deep inelastic scattering. In addition to threshold effects, we include
nuclear corrections for heavy targets which are moderate for quasi-elastic and
large for single pion production. Nuclear effects for deep inelastic reactions
are small. We present cross sections together with their nuclear corrections
for various channels which are useful for interpreting the experimental results
and for determining parameters of the neutrino sector..Comment: 24 pages, 18 figure
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
The growth in the number of completely sequenced microbial genomes (bacterial and archaeal) has generated a need for a procedure that provides UniProtKB/Swiss-Prot-quality annotation to as many protein sequences as possible. We have devised a semi-automated system, HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes), that uses manually built annotation templates for protein families to propagate annotation to all members of manually defined protein families, using very strict criteria. The HAMAP system is composed of two databases, the proteome database and the family database, and of an automatic annotation pipeline. The proteome database comprises biological and sequence information for each completely sequenced microbial proteome, and it offers several tools for CDS searches, BLAST options and retrieval of specific sets of proteins. The family database currently comprises more than 1500 manually curated protein families and their annotation templates that are used to annotate proteins that belong to one of the HAMAP families. On the HAMAP website, individual sequences as well as whole genomes can be scanned against all HAMAP families. The system provides warnings for the absence of conserved amino acid residues, unusual sequence length, etc. Thanks to the implementation of HAMAP, more than 200 000 microbial proteins have been fully annotated in UniProtKB/Swiss-Prot (HAMAP website: http://www.expasy.org/sprot/hamap)
Nuclear Structure Functions in the Large x Large Q^2 Kinematic Region in Neutrino Deep Inelastic Scattering
Data from the CCFR E770 Neutrino Deep Inelastic Scattering (DIS) experiment
at Fermilab contain events with large Bjorken x (x>0.7) and high momentum
transfer (Q^2>50 (GeV/c)^2). A comparison of the data with a model based on no
nuclear effects at large x, shows a significant excess of events in the data.
Addition of Fermi gas motion of the nucleons in the nucleus to the model does
not explain the excess. Adding a higher momentum tail due to the formation of
``quasi-deuterons'' makes some improvement. An exponentially falling F_2
\propto e^-s(x-x_0) at large x, predicted by ``multi-quark clusters'' and
``few-nucleon correlations'', can describe the data. A value of s=8.3 \pm
0.7(stat.)\pm 0.7(sys.) yields the best agreement with the data.Comment: 4 pages, 4 figures, 1 table. Sibmitted to PR
Long-term exposure to ambient particulate matter and prevalence of subclinical atherosclerosis in the Multiethnic Study of Atherosclerosis (MESA)
http://deepblue.lib.umich.edu/bitstream/2027.42/57884/1/Long Term Exposure to Ambient Particulate Matter and Prevalance of Subclinical Athersclerosis in the Multiethnic Study of Atherosclerosis .pd
Associations between recent exposure to ambient fine particulate matter and blood pressure in the Multi-Ethnic Study of Atherosclerosis
This EHP-in-Press article has been peer-reviewed, revised, and accepted for publication. The EHP-in-Press articles are completely citable using the assigned DOI code for the article. This document will be replaced with the copyedited and formatted version as soon as it is available. Through the DOI number used in the citation, you will be able to access this document at each stage of the publication process. Environ Health Perspect doi:10.1289/ehp.10899 available via http://dx.doi.org/ [Online 24 January 2008http://deepblue.lib.umich.edu/bitstream/2027.42/58000/1/Associations between recent exposure to ambient fine particulate matter and blood pressure in the Multi Ethnic Study of Atherosclerosis.pd
Search for charged Higgs decays of the top quark using hadronic tau decays
We present the result of a search for charged Higgs decays of the top quark,
produced in collisions at 1.8 TeV. When the charged
Higgs is heavy and decays to a tau lepton, which subsequently decays
hadronically, the resulting events have a unique signature: large missing
transverse energy and the low-charged-multiplicity tau. Data collected in the
period 1992-1993 at the Collider Detector at Fermilab, corresponding to
18.70.7~pb, exclude new regions of combined top quark and charged
Higgs mass, in extensions to the standard model with two Higgs doublets.Comment: uuencoded, gzipped tar file of LaTeX and 6 Postscript figures; 11 pp;
submitted to Phys. Rev.
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