Physicochemical characterization of traditionally fermented liquid manure from fish waste (Gunapaselam)

Kunapajala, a fermented liquid from animal wastes has been used as manure since ancient times. Using this indigenous knowledge, fermented manure, Gunapaselam (in Tamil, Indian language), was prepared using fish waste and jaggery. An attempt was made to characterize Gunapaselam (GP) by measuring biological oxygen demand (BOD), chemical oxygen demand (COD), crude protein, lipid, minerals and amino acid content. The microbial status of the fermented manure was also enumerated. Phytotoxicity analysis was performed to scientifically validate its manurial potential. Changes in the pH, glucose, lactic acid, ethanol and acetic acid contents were recorded for first 5 days till the pH dropped to 4.0. The results show that during the course of fermentation, glucose concentration decreases with concomitant increase in the concentration of lactic acid, ethanol, and acetic acid. The analysis reveals the presence of macro, micronutrients and essential amino acids in Gunapaselam that could promote plant growth. Gunapaselam preserved permissible limits of BOD and COD levels. Microbial analysis proved the preparation was free from spoiling microbes. The highest germination index achieved from 50 fold diluted Gunapaselam. The data obtained confirmed the manurial potential of Gunapaselam which could restore the fertility of the soil deteriorated by chemical fertilizers

Abnormal circadian rhythm and cortisol excretion in autistic children: a clinical study

Aim To determine the circadian rhythm alteration of cortisol excretion and the level of corticosteroids in children with different grades of autism severity. Methods The study included 45 children with different grades of autism severity (low [LFA], medium [MFA], and high functioning autism [HFA]), 15 in each group, and 45 age/sex-matched children with typical development. The urinary levels of free cortisol (at three phases of 24-hour cycle), corticosteroids, vanilylmandelic acid, and 5-hydroxyindole acetic acid were determined. Results Alteration in the pattern of cortisol excretion (Phases I, II, and III) was observed in children with LFA (Phase I: 43.8 ± 4.43 vs 74.30±8.62, P = 0.000; Phase II: 21.1±2.87 vs 62±7.68, P < 0.001; Phase III: 9.9 ± 1.20 vs 40 ± 5.73, P < 0.001) and MFA (Phase I: 43.8 ± 4.43 vs 52.6±7.90, P < 0.001; Phase II: 21.1±2.87 vs 27.4±4.05, P < 0.001; Phase III: 9.9 ± 1.20 vs 19 ± 2.50, P < 0.001) compared to the control group. The corticosteroids excretion levels were higher in all the groups of children with autism than in the control group. The level of 5-hydroxyindole acetic acid was significantly higher in children with LFA (8.2±1.48 vs 6.8±0.85, P < 0.001) and MFA (8.2±1.48 vs 7.4± 0.89, P = 0.001) and not significantly higher in children with HFA than in the control group. The changes were correlated with degrees of severity of the disorder. Conclusion These data suggest that altered cortisol excretion pattern and high level of corticosteroids in urine may probably be a consequence of altered hypothalamic-pituitary- adrenal axis function, which may contribute to the pathogenesis and affect the severity of autism

A review of the application of Next Generation Sequencing (NGS) in wild terrestrial vertebrate research

In era of sequencing revolution, scientists seek for knowledge about the ever-expanding field of technology, Next Generation Sequence (NGS) to be applied in their research due to its high reliability and rate of discovery. What is NGS? To obtain a detailed understanding about NGS, it is required to look back the history of sequencing and how the NGS stepped into life science. This review paper gives an overview of NGS projects in wild terrestrial vertebrate including applications such as whole genome sequencing and metagenomics

Lip licking behavior in captive Malayan tapirs (Tapirus indicus): manifestation of a stereotypic or stress related response?

Malayan tapirs are highly endangered and wild populations are fast declining. Thus, captive breeding programs in zoos and governmental breeding centers are the most promising conservation strategy for this species. Despite being common, lip licking, a type of oral behavior, has received little attention in the past, and impacts on the welfare of captive Malayan tapirs have not been quantified. Here, we videoed the behavior of seven captive tapirs for eight hours per diem (0900 - 1700) using instantaneous sampling for six months to investigate which stressors in captivity (enclosure type, enclosure size, humidity, visitors) cause increased lip licking behavior. We show that lip licking is induced by unsuitable humidity whereby dry humidity below 65% caused a significant increase in this behavior. We found lip licking behavior in tapirs is not a stereotypic behavior, but it may indicate a stress response towards heat. Hence, we suggest that breeding centers re-evaluate their exhibit design and behavioral enrichments, implementing simple design changes that would help to reduce lip licking and consequently increase the welfare of captive Malayan tapirs

Optimal method to introduce faeces sample for olfactory-cues studies in Malayan tapir (Tapirus indicus)

Studying the hidden meaning behind the behaviours of wildlife can provide plenty of information for the betterment of their conservation. In this research, a preliminary study had been conducted to find out whether Malayan tapir (Tapirus indicus) (1) sniffs on the faeces or not and (2) to identify the optimal method of presenting the faeces samples. Five individuals of Malayan tapirs were contributed to this research as the samples donors and/or the subject. Basically, for this experiment several replicates of faeces samples were collected from the donors and frozen at -20˚C, and the thawed samples were introduced to the subjects at different time slots (morning, afternoon and night). The results showed that tapirs exhibited both investigation and identification behaviours when sniff on faeces samples of other individuals. However, the sniffing was observed only during early in the morning and night when they were active due to their nocturnal characteristic. We found that, the location and the sample nature (i.e., thawed at sufficient period of time) had influenced the attractiveness of presented faeces sample to tapirs. Presenting the samples at feeding and sleeping areas increased the chance for the tapirs to sniff on samples and well thawed samples which emits strong odour drawn tapir’s attention. Thus, it is recommended to take into account the above factors for further investigation related to the individual recognition through olfactory cues in Malayan tapir. The findings of this study could be incorporated in ex-situ conservation mainly during the selection of mating partners prior to physical introduction of the animals (strategy to avoid any injuries to tapir due to fighting and inbreeding in captivity)

(E)-N-(Anthracen-9-yl­methyl­idene)-4-nitro­aniline

In the title molecule, C21H14N2O2, the anthracenyl system is approximately planar [maximum deviation = 0.056 (4) Å] and is oriented at a dihedral angle of 73.6 (1)° with respect to the benzene ring. An intra­molecular C—H⋯N hydrogen bond generates an S(6) ring motif. The crystal packing is stabilized by C—H⋯π and π–π inter­actions [centroid–centroid distances of 3.688 (2), 3.656 (1) and 3.716 (2) Å]

A revisit to a low-cost method for the isolation of microsatellite markers: the case of the endangered Malayan tapir (Tapirus indicus)

There are many approaches to develop microsatellite markers. Despite the availability of the more advanced technology in the market, due to budget constraints, we revisited an easy and rapid polymerase chain reaction (PCR) cloning-sequencing method to design microsatellite markers for Tapirus indicus. Using six random amplified microsatellite markers, this study had rapidly generated 45 unique genomic sequences containing microsatellites. After screening 15 terminal and seven intermediate microsatellite loci, we shortlisted five and seven which were amplified either by single- or multiplex PCR using the economical three-primer PCR method. Genotyping attempts were made with ten T. indicus individuals using three of the terminal microsatellite loci and all seven intermediate loci. However, none of the terminal microsatellite loci were considered useful for population genotyping studies, while the seven intermediate loci showed good amplification but were monomorphic in the ten samples and the subsequent 51 tapir samples. Despite successful detection of amplified loci, we would like to highlight that, researchers who are interested in this alternative method for isolation of microsatellite loci to be cautious and be aware of the limitations and downfalls reported herein that could render these loci unsuitable for population genotyping

Approaches in biotechnological applications of natural polymers

Natural polymers, such as gums and mucilage, are biocompatible, cheap, easily available and non-toxic materials of native origin. These polymers are increasingly preferred over synthetic materials for industrial applications due to their intrinsic properties, as well as they are considered alternative sources of raw materials since they present characteristics of sustainability, biodegradability and biosafety. As definition, gums and mucilages are polysaccharides or complex carbohydrates consisting of one or more monosaccharides or their derivatives linked in bewildering variety of linkages and structures. Natural gums are considered polysaccharides naturally occurring in varieties of plant seeds and exudates, tree or shrub exudates, seaweed extracts, fungi, bacteria, and animal sources. Water-soluble gums, also known as hydrocolloids, are considered exudates and are pathological products; therefore, they do not form a part of cell wall. On the other hand, mucilages are part of cell and physiological products. It is important to highlight that gums represent the largest amounts of polymer materials derived from plants. Gums have enormously large and broad applications in both food and non-food industries, being commonly used as thickening, binding, emulsifying, suspending, stabilizing agents and matrices for drug release in pharmaceutical and cosmetic industries. In the food industry, their gelling properties and the ability to mold edible films and coatings are extensively studied. The use of gums depends on the intrinsic properties that they provide, often at costs below those of synthetic polymers. For upgrading the value of gums, they are being processed into various forms, including the most recent nanomaterials, for various biotechnological applications. Thus, the main natural polymers including galactomannans, cellulose, chitin, agar, carrageenan, alginate, cashew gum, pectin and starch, in addition to the current researches about them are reviewed in this article.. }To the Conselho Nacional de Desenvolvimento Cientfíico e Tecnológico (CNPq) for fellowships (LCBBC and MGCC) and the Coordenação de Aperfeiçoamento de Pessoal de Nvíel Superior (CAPES) (PBSA). This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit, the Project RECI/BBB-EBI/0179/2012 (FCOMP-01-0124-FEDER-027462) and COMPETE 2020 (POCI-01-0145-FEDER-006684) (JAT)

SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues

Variability in SARS-CoV-2 susceptibility and COVID-19 disease severity between individuals is partly due to genetic factors. Here, we identify 4 genomic loci with suggestive associations for SARS-CoV-2 susceptibility and 19 for COVID-19 disease severity. Four of these 23 loci likely have an ethnicity-specific component. Genome-wide association study (GWAS) signals in 11 loci colocalize with expression quantitative trait loci (eQTLs) associated with the expression of 20 genes in 62 tissues/cell types (range: 1:43 tissues/gene), including lung, brain, heart, muscle, and skin as well as the digestive system and immune system. We perform genetic fine mapping to compute 99% credible SNP sets, which identify 10 GWAS loci that have eight or fewer SNPs in the credible set, including three loci with one single likely causal SNP. Our study suggests that the diverse symptoms and disease severity of COVID-19 observed between individuals is associated with variants across the genome, affecting gene expression levels in a wide variety of tissue types

A first update on mapping the human genetic architecture of COVID-19

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