Association of Microsatellite Markers on Bovine Chromosomes 5 and 6 with Carcass Traits

The objective of this study was to identify chromosomal regions associated with phenotypic variation in carcass traits in three crossbred families. Three half-sib families were developed from crossbred sires. Families 1, 2, and 3 comprised 29, 25, and 77 offspring, respectively (n = 131). The genetic background of the sires, dams, and offspring was 1/3 Angus, 1/3 Hereford, 1/3 Simmental. Carcass traits collected were finished weight, hot carcass weight (HCW), marbling score, Quality Grade, Longissimus muscle area (LMA), rib fat, percent kidney pelvic, and heart fat (KPH), and Yield Grade. Microsatellite markers on chromosomes 5 and 6 were selected based on their relative position. Markers used on chromosome 5 were BM6026, RM103, BM321, RM084, BMS1216, BM315, and BM597. Markers used on chromosome 6 were ILSTS093, ILSTS090, BM1329, BMS518, ILSTS035, BM8124, and BMC4203. Individual marker analysis was conducted because homozygosity of the bulls for some markers hindered interval mapping. Family 1 exhibited allelic affects for finished weight, hot carcass weight, and marbling score on chromosome 5. Markers RM103 and BM321 were associated with finished (P \u3c 0.01) and carcass (P \u3c 0.05) weights. An association with marbling score was identified with BM6026 (P \u3c 0.05), RM103 (P \u3c 0.01), and BM321 (P \u3c 0.01). On chromosome 6, BMC4203 was associated with Longissimus muscle area in family 1 (P \u3c 0.05) and family 2 (P \u3c 0.001). No association was detected (P \u3e 0.05) on family 3

Association of Leptin Gene Markers with Carcass Traits in Beef Cattle

The objective of this study was to evaluate four genetic markers on the leptin gene for association with carcass traits in three crossbred families. Three half-sib families were developed from crossbred sires. Families 1, 2, and 3 comprised 26, 21, and 66 offspring, respectively (n = 113). The genetic background of the sires, dams, and offspring was 1/3 Angus, 1/3 Hereford, 1/3 Simmental. Carcass traits collected were finished weight, hot carcass weight (HCW), marbling score, Quality Grade, Longissimus muscle area (LMA), rib fat, Yield Grade, and percent kidney, pelvic, and heart fat (KPH). The four markers analyzed were located on the exon 2, exon 3, and promoter region of the leptin gene. There was an association of marbling score with leptin exon 3 (P \u3c 0.05), and ability to grade choice with leptin exon 2 (P \u3c 0.05), exon 3 (P \u3c 0.001), and promoter (P \u3c 0.01) in family 2. Family 2 also displayed allelic effects for ability to grade choice (P \u3c 0.01) with leptin exon 3 and promoter. Family 3 showed an association between leptin exon 2 (P \u3c 0.05) and marbling score. No association was detected (P \u3e 0.05) on family 1

Is the American Zebu really Bos indicus?

The American continent was colonized in the 16th century by Europeans who first introduced cattle of Bos taurus origin. Accounts register introduction of Bos indicus cattle into South America in the 19th and continuing through the 20th century, and most reported imports were males derived from the Indian subcontinent. In the present study we show, by using mitochondrial DNA (mtDNA) polymorphism, major participation of matrilineages of taurus origin in the American Zebu purebred origin, i.e., 79, 73 and 100% for the Nellore, Gyr and Brahman breeds, respectively. Moreover, we have created a restriction map identifying polymorphism among B. taurus and B. indicus mtDNA using three restriction enzymes. Results are discussed concerning American Zebu origins and potential use of this information for investigating the contribution of cytoplasmic genes in cattle production traits

Is the American Zebu really Bos indicus?

O continente americano foi colonizado no século XVI por europeus que fizeram as primeiras introduções de bovinos, de origem taurina. Os registros das primeiras importações de Zebus para a América do Sul datam do século XIX e continuam até o século XX, constituídos na maioria por machos do sub-continente indiano. Neste artigo, demonstramos, através dos estudos de polimorfismos no DNA mitocondrial (mtDNA), uma participação majoritária de matriarcas de origem taurina na formação do Zebu PO americano (79% dos animais analisados da raça Nelore, 73% na Gir e 100% na Brahman). Ainda, criamos um mapa de restrição com os polimorfismos descritos de três enzimas de restrição. Os resultados estão discutidos em termos da origem do Zebu americano e da aplicação deste conhecimento no estudo dos efeitos do genoma citoplasmático, nas características produtivas dos bovinos.The American continent was colonized in the 16th century by Europeans who first introduced cattle of Bos taurus origin. Accounts register introduction of Bos indicus cattle into South America in the 19th and continuing through the 20th century, and most reported imports were males derived from the Indian subcontinent. In the present study we show, by using mitochondrial DNA (mtDNA) polymorphism, major participation of matrilineages of taurus origin in the American Zebu purebred origin, i.e., 79, 73 and 100% for the Nellore, Gyr and Brahman breeds, respectively. Moreover, we have created a restriction map identifying polymorphism among B. taurus and B. indicus mtDNA using three restriction enzymes. Results are discussed concerning American Zebu origins and potential use of this information for investigating the contribution of cytoplasmic genes in cattle production traits

Mitochondrial DNA single nucleotide polymorphism associated with weight estimated breeding values in Nelore cattle (Bos indicus)

We sampled 119 Nelore cattle (Bos indicus), 69 harboring B. indicus mtDNA plus 50 carrying Bos taurus mtDNA, to estimate the frequencies of putative mtDNA single nucleotide polymorphisms (SNPs) and investigate their association with Nelore weight and scrotal circumference estimated breeding values (EBVs). The PCR restriction fragment length polymorphism (PCR-RFLP) method was used to detect polymorphisms in the mitochondrial asparagine, cysteine, glycine, leucine and proline transporter RNA (tRNA) genes (tRNAasn, tRNAcys, tRNAgly, tRNAleu and tRNApro). The 50 cattle carrying B. taurus mtDNA were monomorphic for all the tRNA gene SNPs analyzed, suggesting that they are specific to mtDNA from B. indicus cattle. No tRNAcys or tRNAgly polymorphisms were detected in any of the cattle but we did detect polymorphic SNPs in the tRNAasn, tRNAleu and tRNApro genes in the cattle harboring B. indicus mtDNA, with the same allele observed in the B. taurus sequence being present in the following percentage of cattle harboring B. indicus mtDNA: 72.46% for tRNAasn, 95.23% for tRNAleu and 90.62% for tRNApro. Analyses of variance using the tRNAasn SNP as the independent variable and EBVs as the dependent variable showed that the G -> T SNP was significantly associated (p < 0.05) with maternal EBVs for weight at 120 and 210 days (p < 0.05) and animal's EBVs for weight at 210, 365 and 455 days. There was no association of the tRNAasn SNP with the scrotal circumference EBVs. These results confirm that mtDNA can affect weight and that mtDNA polymorphisms can be a source of genetic variation for quantitative traits

A deterministic simulation study of embryo marker-assisted selection for age at first calving in Nellore (Bos indicus) beef cattle

We used deterministic simulation of four alternative multiple ovulation and embryo manipulation (MOET) closed nucleus schemes to investigate the benefits of using marker-assisted selection (MAS) of Nellore (Bos indicus) beef cattle embryos prior to transplantation to reduce the age at first calving (AFC). We found that MAS resulted in increased genetic gain as compared to selection without AFC quantitative trait loci (AFC-QTL) information. With single-stage selection the genetic response (GR) increased as follows: GR = 0.68% when the AFC-QTL explained 0.02 of the AFC additive genetic variance (sigma2A); GR = 1.76% for AFC-QTL explaining 0.05 sigma2A; GR = 3.7% for AFC-QTL explaining 0.1 sigma2A; and GR = 55.76% for AFC-QTL explaining 0.95 sigma2A. At the same total selected proportion, two-stage selection resulted in less genetic gain than single stage MAS at two-years of age. A single stage selection responses of > 95% occurred with pre-selected proportions of 0.4 (0.1 sigma2A explained by AFC-QTL), 0.2 (0.3 sigma2A explained by AFC-QTL) and 0.1 (0.5 sigma2A explained by AFC-QTL), indicating that the combined use of MAS and pre-selection can substantially reduce the cost of keeping recipient heifers in MOET breeding schemes. When the number of recipients was kept constant, the benefit of increasing embryo production was greater for the QTL explaining a higher proportion of the additive genetic variance. However this advantage had a diminishing return especially for QTL explaining a small proportion of the additive genetic variance. Thus, marker assisted selection of embryos can be used to achieve increased genetic gain or a similar genetic response at reduced expense by decreasing the number of recipient cows and number of offspring raised to two-years of age

Associated production of prompt J/ψJ/\psi and Υ\mathit{\Upsilon} mesons in pppp collisions at s=13 TeV\sqrt{s}=13\,\mathrm{TeV}

International audienceThe associated production of prompt $J/\psi$ and $\mathit{\mathit{\Upsilon}}$ mesons in $pp$ collisions at a centre-of-mass energy of $\sqrt{s}=13\,\mathrm{TeV}$ is studied using LHCb data, corresponding to an integrated luminosity of $4\,\mathrm{fb}^{-1}$. The measurement is performed for $J/\psi$ ($\mathit{\Upsilon}$) mesons with a transverse momentum $p_{\mathrm{T}}<10\,(30)\,\mathrm{GeV}/c$ in the rapidity range $2.0<y<4.5$. In this kinematic range, the cross-section of the associated production of prompt $J/\psi$ and $\mathit{\Upsilon}(1S)$ mesons is measured to be $133 \pm 22 \pm 7 \pm 3 \, \mathrm{pb}$, with a significance of $7.9\,\sigma$, and that of prompt $J/\psi$ and $\mathit{\Upsilon}(2S)$ mesons to be $76\pm 21 \pm 4 \pm 7 \, \mathrm{pb}$, with a significance of $4.9\,\sigma$. The first uncertainty is statistical, the second systematic, and the third due to uncertainties on the used branching fractions. This is the first observation of the associated production of $J/\psi$ and $\mathit{\Upsilon}(1S)$ in proton-proton collisions. Differential cross-sections are measured as function of variables that are sensitive to kinematic correlations between the $J/\psi$ and $\mathit{\Upsilon}(1S)$ mesons. The effective cross-sections of the associated production of prompt $J/\psi$ and $\mathit{\Upsilon}$ mesons are obtained and found to be compatible with measurements using other particle productions

Search for the lepton-flavour violating decays B0→K∗0μ±e∓B^0 \to K^{*0} \mu^\pm e^\mp and Bs0→ϕμ±e∓B_s^0 \to \phi \mu^\pm e^\mp

A search for the lepton-flavour violating decays $B^0 \to K^{*0} \mu^\pm e^\mp$ and $B_s^0 \to \phi \mu^\pm e^\mp$ is presented, using proton-proton collision data collected by the LHCb detector at the LHC, corresponding to an integrated luminosity of $9\,\text{fb}^{-1}$. No significant signals are observed and upper limits of \begin{align} {\cal B}( B^0 \to K^{*0} \mu^+ e^- ) &< \phantom{1}5.7\times 10^{-9}~(6.9\times 10^{-9}),\newline {\cal B}( B^0 \to K^{*0} \mu^- e^+ ) &< \phantom{1}6.8\times 10^{-9}~(7.9\times 10^{-9}),\newline {\cal B}( B^0 \to K^{*0} \mu^\pm e^\mp ) &< 10.1\times 10^{-9}~(11.7\times 10^{-9}),\newline {\cal B}( B_s^0 \to \phi \mu^\pm e^\mp ) &< 16.0\times 10^{-9}~(19.8\times 10^{-9}) \end{align} are set at $90\%~(95\%)$ confidence level. These results constitute the world's most stringent limits to date, with the limit on the decay $B_s^0 \to \phi \mu^\pm e^\mp$ the first being set. In addition, limits are reported for scalar and left-handed lepton-flavour violating New Physics scenarios.A search for the lepton-flavour violating decays B$^{0}$ → K$^{*0}$μ$^{±}$e$^{∓}$ and ${B}_s^0$→ ϕμ$^{±}$e$^{∓}$ is presented, using proton-proton collision data collected by the LHCb detector at the LHC, corresponding to an integrated luminosity of 9 fb$^{−1}$. No significant signals are observed and upper limits of${\displaystyle \begin{array}{c}\mathcal{B}\left({B}^0\to {K}^{\ast 0}{\mu}^{+}{e}^{-}\right)<5.7\times {10}^{-9}\left(6.9\times {10}^{-9}\right),\\ {}\mathcal{B}\left({B}^0\to {K}^{\ast 0}{\mu}^{-}{e}^{+}\right)<6.8\times {10}^{-9}\left(7.9\times {10}^{-9}\right),\\ {}\mathcal{B}\left({B}^0\to {K}^{\ast 0}{\mu}^{\pm }{e}^{\mp}\right)<10.1\times {10}^{-9}\left(11.7\times {10}^{-9}\right),\\ {}\mathcal{B}\left({B}_s^0\to \phi {\mu}^{\pm }{e}^{\mp}\right)<16.0\times {10}^{-9}\left(19.8\times {10}^{-9}\right)\end{array}}$are set at 90% (95%) confidence level. These results constitute the world’s most stringent limits to date, with the limit on the decay ${B}_s^0$→ ϕμ$^{±}$e$^{∓}$ the first being set. In addition, limits are reported for scalar and left-handed lepton-flavour violating New Physics scenarios.[graphic not available: see fulltext]A search for the lepton-flavour violating decays $B^0 \to K^{*0} \mu^\pm e^\mp$ and $B_s^0 \to \phi \mu^\pm e^\mp$ is presented, using proton-proton collision data collected by the LHCb detector at the LHC, corresponding to an integrated luminosity of $9\,\text{fb}^{-1}$. No significant signals are observed and upper limits of \begin{align} {\cal B}( B^0 \to K^{*0} \mu^+ e^- ) &< \phantom{1}5.7\times 10^{-9}~(6.9\times 10^{-9}),\newline {\cal B}( B^0 \to K^{*0} \mu^- e^+ ) &< \phantom{1}6.8\times 10^{-9}~(7.9\times 10^{-9}),\newline {\cal B}( B^0 \to K^{*0} \mu^\pm e^\mp ) &< 10.1\times 10^{-9}~(11.7\times 10^{-9}),\newline {\cal B}( B_s^0 \to \phi \mu^\pm e^\mp ) &< 16.0\times 10^{-9}~(19.8\times 10^{-9}) \end{align} are set at $90\%~(95\%)$ confidence level. These results constitute the world's most stringent limits to date, with the limit on the decay $B_s^0 \to \phi \mu^\pm e^\mp$ the first being set. In addition, limits are reported for scalar and left-handed lepton-flavour violating New Physics scenarios

Measurement of the W boson mass

International audienceThe W boson mass is measured using proton-proton collision data at $\sqrt{s}$ = 13 TeV corresponding to an integrated luminosity of 1.7 fb$^{−1}$ recorded during 2016 by the LHCb experiment. With a simultaneous fit of the muon q/p$_{T}$ distribution of a sample of W → μν decays and the ϕ$^{*}$ distribution of a sample of Z → μμ decays the W boson mass is determined to be${m}_w=80354\pm {23}_{\mathrm{stat}}\pm {10}_{\mathrm{exp}}\pm {17}_{\mathrm{theory}}\pm {9}_{\mathrm{PDF}}\mathrm{MeV},$where uncertainties correspond to contributions from statistical, experimental systematic, theoretical and parton distribution function sources. This is an average of results based on three recent global parton distribution function sets. The measurement agrees well with the prediction of the global electroweak fit and with previous measurements.[graphic not available: see fulltext