266 research outputs found

    Wavelet Based Fractal Analysis of Airborne Pollen

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    The most abundant biological particles in the atmosphere are pollen grains and spores. Self protection of pollen allergy is possible through the information of future pollen contents in the air. In spite of the importance of airborne pol len concentration forecasting, it has not been possible to predict the pollen concentrations with great accuracy, and about 25% of the daily pollen forecasts have resulted in failures. Previous analysis of the dynamic characteristics of atmospheric pollen time series indicate that the system can be described by a low dimensional chaotic map. We apply the wavelet transform to study the multifractal characteristics of an a irborne pollen time series. We find the persistence behaviour associated to low pollen concentration values and to the most rare events of highest pollen co ncentration values. The information and the correlation dimensions correspond to a chaotic system showing loss of information with time evolution.Comment: 11 pages, 7 figure

    Trapping mechanism in overdamped ratchets with quenched noise

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    A trapping mechanism is observed and proposed as the origin of the anomalous behavior recently discovered in transport properties of overdamped ratchets subject to external oscillatory drive in the presence of quenched noise. In particular, this mechanism is shown to appear whenever the quenched disorder strength is greater than a threshold value. The minimum disorder strength required for the existence of traps is determined by studying the trap structure in a disorder configuration space. An approximation to the trapping probability density function in a disordered region of finite length included in an otherwise perfect ratchet lattice is obtained. The mean velocity of the particles and the diffusion coefficient are found to have a non-monotonic dependence on the quenched noise strength due to the presence of the traps.Comment: 21 pages, 6 figures, to appear in PR

    Habitat fragmentation and genetic variability of tetrapod populations

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    In the last two centuries, the development of human civilization has transformed large natural areas into anthropogenic landscapes, making habitat fragmentation a pervasive feature of modern landscapes. In animal populations, habitat fragmentation may alter their genetic diversity and structure due to limited gene flow and dispersion and reduced effective population sizes, potentially leading to genetic drift in small habitat patches. We tested the hypothesis that habitat fragmentation affects genetic diversity of tetrapod populations through a meta-analysis. We also examined certain life history traits of species and particular external landscape factors that may determine the magnitude of genetic erosion observed in fragmented habitats. Our results showed that habitat fragmentation reduces overall genetic diversity of tetrapod populations. Stronger negative fragmentation effects were detected for amphibians, birds, and mammals. Within each taxonomic group, species with large body size were more strongly affected by fragmentation. Particularly within mammals, we found that less vagile species with short generation times represent the most susceptible tetrapod group to lose genetic diversity in fragmented habitats. As external drivers, we found a non-significant trend of lower fragmentation effects in study systems of less than 50 years and stronger effects in older (>100 years) fragmented systems. As expected, the extent of habitat loss was also important in determining the magnitude of genetic erosion in tetrapods. Extreme habitat loss showed stronger negative effects on genetic diversity irrespectively of taxonomic groups. The information gathered in this review also highlights research bias and gaps in the literature.Fil: Rivera OrtĂ­z, F. A.. Universidad Nacional Autonoma de Mexico. Centro de Investigaciones En Ecosistemas; MĂ©xicoFil: Aguilar, Ramiro. Consejo Nacional de Investigaciones CientĂ­ficas y TĂ©cnicas. Centro CientĂ­fico TecnolĂłgico CĂłrdoba. Instituto Multidisciplinario de BiologĂ­a Vegetal (p); ArgentinaFil: Arizmendi, M. D. C.. Universidad Nacional AutĂłnoma de MĂ©xico; MĂ©xicoFil: Quesada, M.. Universidad Nacional Autonoma de Mexico. Centro de Investigaciones En Ecosistemas; MĂ©xicoFil: Oyama, K.. Universidad Nacional Autonoma de Mexico. Centro de Investigaciones En Ecosistemas; MĂ©xic

    Vaccination With Mouse Dendritic Cells Loaded With an IpaD-IpaB Fusion Provides Protection Against Shigellosis

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    This work is licensed under a Creative Commons Attribution 4.0 International License.Diarrheal diseases are a major cause of morbidity and mortality worldwide. They are most prevalent in settings with inadequate sanitation, poor hygiene and contaminated water. An important diarrheal pathogen in such settings is Shigella. No commercially available vaccine exists against shigellosis and immunity to the pathogen is serotype-restricted. We have previously shown that a polypeptide fusion of the Type Three Secretion Apparatus (T3SA) proteins IpaB and IpaD (named DBF) was efficacious as a vaccine against Shigella. Vaccination using different administration routes indicated that protection conferred by DBF did not fully correlate with antibodies. To define the immune responses involved in protection, we studied cellular responses to intranasal immunization with the DBF and the adjuvant dmLT. We found dendritic cell (DC) activation at the nasal associated lymphoid tissue (NALT). Activation markers CD86 and MHCII significantly increase in cells from immunized mice. Antigen exposure in vitro further confirmed the upregulation of CD80 and CD40 in primary dendritic cells. Animals immunized with antigen-primed dendritic cells were protected against Shigella infection, at levels comparable to the efficacy of immunization with the protein vaccine formulation. Therefore, we show that antigen-primed DCs are enough to provide immunity, and propose a mechanism of protection against Shigella spp. based on DC-mediated antigen presentation to T cells.NIH R01 AI 007337

    Converting genetic network oscillations into somite spatial pattern

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    In most vertebrate species, the body axis is generated by the formation of repeated transient structures called somites. This spatial periodicity in somitogenesis has been related to the temporally sustained oscillations in certain mRNAs and their associated gene products in the cells forming the presomatic mesoderm. The mechanism underlying these oscillations have been identified as due to the delays involved in the synthesis of mRNA and translation into protein molecules [J. Lewis, Current Biol. {\bf 13}, 1398 (2003)]. In addition, in the zebrafish embryo intercellular Notch signalling couples these oscillators and a longitudinal positional information signal in the form of an Fgf8 gradient exists that could be used to transform these coupled temporal oscillations into the observed spatial periodicity of somites. Here we consider a simple model based on this known biology and study its consequences for somitogenesis. Comparison is made with the known properties of somite formation in the zebrafish embryo . We also study the effects of localized Fgf8 perturbations on somite patterning.Comment: 7 pages, 7 figure

    Visualization of the type III secretion sorting platform of Shigella flexneri

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    Bacterial type III secretion machines are widely used to inject virulence proteins into eukaryotic host cells. These secretion machines are evolutionarily related to bacterial flagella and consist of a large cytoplasmic complex, a transmembrane basal body, and an extracellular needle. The cytoplasmic complex forms a sorting platform essential for effector selection and needle assembly, but it remains largely uncharacterized. Here we use high-throughput cryoelectron tomography (cryo-ET) to visualize intact machines in a virulent Shigella flexneri strain genetically modified to produce minicells capable of interaction with host cells. A high-resolution in situ structure of the intact machine determined by subtomogram averaging reveals the cytoplasmic sorting platform, which consists of a central hub and six spokes, with a pod-like structure at the terminus of each spoke. Molecular modeling of wild-type and mutant machines allowed us to propose a model of the sorting platform in which the hub consists mainly of a hexamer of the Spa47 ATPase, whereas the MxiN protein comprises the spokes and the Spa33 protein forms the pods. Multiple contacts among those components are essential to align the Spa47 ATPase with the central channel of the MxiA protein export gate to form a unique nanomachine. The molecular architecture of the Shigella type III secretion machine and its sorting platform provide the structural foundation for further dissecting the mechanisms underlying type III secretion and pathogenesis and also highlight the major structural distinctions from bacterial flagella

    Priority sites for wildfowl conservation in Mexico

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    A set of priority sites for wildfowl conservation in Mexico was determined using contemporary count data (1991–2000) from the U.S. Fish & Wildlife Service mid-winter surveys. We used a complementarity approach implemented through linear integer programming that addresses particular conservation concerns for every species included in the analysis and large fluctuations in numbers through time. A set of 31 priority sites was identified, which held more than 69% of the mid-winter count total in Mexico during all surveyed years. Six sites were in the northern highlands, 12 in the central highlands, six on the Gulf of Mexico coast and seven on the upper Pacific coast. Twenty-two sites from the priority set have previously been identified as qualifying for designation as wetlands of international importance under the Ramsar Convention and 20 sites are classified as Important Areas for Bird Conservation in Mexico. The information presented here provides an accountable, spatially-explicit, numerical basis for ongoing conservation planning efforts in Mexico, which can be used to improve existing wildfowl conservation networks in the country and can also be useful for conservation planning exercises elsewhere
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