Back to the edge: relative coordinate system for use-wear analysis

Use-wear studies rely heavily on experiments and reference collections to infer the function of archeological artifacts. Sequential experiments, in particular, are necessary to understand how use-wear develops. Consequently, it is crucial to analyze the same location on the tool's surface during the course of an experiment. Being able to relocate the area of interest on a sample is also essential for reproducibility in use-wear studies. However, visual relocation has limited applicability and there is currently no easy and efficient alternative. Here we propose a simple protocol to create a coordinate system directly on the sample. Three ceramic beads that serve as reference markers are adhered onto the sample, either with epoxy resin or acrylic polymer. The former is easier to work with but the latter is reversible so it can be applied to archeological samples too. The microscope's software then relocates the position(s) of interest. We demonstrate the feasibility of this approach and measure its repeatability by imaging the same position on an experimental flint blade 10 times with two confocal microscopes. Our results show that the position can be relocated automatically with a horizontal positional repeatability of approximately 14% of the field of view. Quantitative surface texture measurements according to ISO 25178 vary due to this positional inaccuracy, but it is still unknown whether this variation would mask functional differences. Although still perfectible, we argue that this protocol represents an important step toward repeatability and reproducibility in experimental archeology, especially in use-wear studies.Funding Agency Romisch-Germanisches Zentralmuseum - Leibniz Research Institute for Archeology by German Federal and Rhineland Palatinate funding (Sondertatbestand "Spurenlabor")info:eu-repo/semantics/publishedVersio

The predicted RNA-binding protein regulome of axonal mRNAs

Neurons are morphologically complex cells that rely on the compartmentalization of protein expression to develop and maintain their cytoarchitecture. Targeting of RNA transcripts to axons is one of the mechanisms that allows rapid local translation of proteins in response to extracellular signals. 3'; untranslated regions (UTRs) of mRNA are noncoding sequences that play a critical role in determining transcript localization and translation by interacting with specific RNA-binding proteins (RBPs). However, how 3' UTRs contribute to mRNA metabolism and the nature of RBP complexes responsible for these functions remain elusive. We performed 3' end sequencing of RNA isolated from cell bodies and axons of sympathetic neurons exposed to either Nerve Growth factor (NGF) or Neurotrophin 3 (NT-3). NGF and NT-3 are growth factors essential for sympathetic neuron development through distinct signalling mechanisms. Whereas NT-3 acts mostly locally, NGF signal is retrogradely transported from axons to cell bodies. We discovered that both NGF and NT-3 affect transcription and alternative polyadenylation in the nucleus and induce the localization of specific 3'UTR isoforms to axons, including short 3’UTR isoforms found exclusively in axons. The integration of our data with CLIP sequencing data supports a model whereby long 3’UTR isoforms associate with RBP complexes in the nucleus, and upon reaching the axons, are remodelled locally into shorter isoforms. Our findings shed new light into the complex relationship between nuclear polyadenylation, mRNA localisation and local 3'UTR remodelling in developing neurons

Tweet-tales: moods of socio-economic crisis?

The widespread adoption of highly interactive social media like Twitter, Facebook and other platforms allow users to communicate moods and opinions to their social network. Those platforms represent an unprecedented source of information about human habits and socio-economic interactions. Several new studies have started to exploit the potential of these big data as fingerprints of economic and social interactions. The present analysis aims at exploring the informative power of indicators derived from social media activity, with the aim to trace some preliminary guidelines to investigate the eventual correspondence between social media indices and available labour market indicators at a territorial level. The study is based on a large dataset of about 4 million Italian-language tweets collected from October 2014 to December 2015, filtered by a set of specific keywords related to the labour market. With techniques from machine learning and user’s geolocalization, we were able to subset the tweets on specific topics in all Italian provinces. The corpus of tweets is then analyzed with linguistic tools and hierarchical clustering analysis. A comparison with traditional economic indicators suggests a strong need for further cleaning procedures, which are then developed in detail. As data from social networks are easy to obtain, this represents a very first attempt to evaluate their informative power in the Italian context, which is of potentially high importance in economic and social research

Pushing the Limits of MALDI-TOF Mass Spectrometry: Beyond Fungal Species Identification

Matrix assisted laser desorption ionization time of flight (MALDI–TOF) is a powerful analytical tool that has revolutionized microbial identification. Routinely used for bacterial identification, MALDI-TOF has recently been applied to both yeast and filamentous fungi, confirming its pivotal role in the rapid and reliable diagnosis of infections. Subspecies-level identification holds an important role in epidemiological investigations aimed at tracing virulent or drug resistant clones. This review focuses on present and future applications of this versatile tool in the clinical mycology laboratory

Proximal and distal control for ligand binding in neuroglobin: role of the CD loop and evidence for His64 gating

Neuroglobin (Ngb) is predominantly expressed in neurons of the central and peripheral nervous systems and it clearly seems to be involved in neuroprotection. Engineering Ngb to observe structural and dynamic alterations associated with perturbation in ligand binding might reveal important structural determinants, and could shed light on key features related to its mechanism of action. Our results highlight the relevance of the CD loop and of Phe106 as distal and proximal controls involved in ligand binding in murine neuroglobin. We observed the effects of individual and combined mutations of the CD loop and Phe106 that conferred to Ngb higher CO binding velocities, which we correlate with the following structural observations: the mutant F106A shows, upon CO binding, a reduced heme sliding hindrance, with the heme present in a peculiar double conformation, whereas in the CD loop mutant "Gly-loop", the original network of interactions between the loop and the heme was abolished, enhancing binding via facilitated gating out of the distal His64. Finally, the double mutant, combining both mutations, showed a synergistic effect on CO binding rates. Resonance Raman spectroscopy and MD simulations support our findings on structural dynamics and heme interactions in wild type and mutated Ngbs

General Method to Unravel Ancient Population Structures through Surnames, Final Validation on Italian Data

We analyze the geographic location of 77,451 different Italian surnames (17,579,891 individuals) obtained from the lists of telephone subscribers of the year 1993. By using a specific neural network analysis (Self-Organizing Maps, SOMs), we automatically identify the geographic origin of 49,117 different surnames. To validate the methodology, we compare the results to a study, previously conducted, on the same database, with accurate supervised methods. By comparing the results, we find an overlap of 97%, meaning that the SOMs methodology is highly reliable and well traces back the geographic origin of surnames at the time of their introduction (Late Middle Ages/Renaissance in Italy). SOMs results enables one to distinguish monophyletic surnames from polyphyletic ones, that is surnames having had a single geographic and historic origin from those that started to be in use, with an identical spelling, in different locations (respectively, 76.06% and 21.05% of the total). As we are interested in geographic origins, polyphyletic surnames are excluded from further analyses. By comparing the present location of each monophyletic surname to its inferred geographic origin in late Middle Ages/Renaissance, we measure the extent of the migrations having occurred in Italy since that time. We find that the percentage of individuals presently living in the very area where their surname started to be in use centuries ago is extremely variable (ranging from 22.77% to 77.86% according to the province), thus meaning that self-assessed regional identities seldom correspond to the autochthony they imply. For example the upper part of the Thyrennian coast (Northern Latium, Tuscany) has a strong identity but few autochthonous inhabitants (28%) having been a passageway from the North to the South of Italy

3D-printed scaffold composites for the stimuli-induced local delivery of bioactive adjuncts

Polysaccharide scaffolds have been successfully employed to reconstruct environments that sustain skin tissue regeneration after injuries. Three-dimensional (3D) advanced additive manufacturing technologies allow creating scaffolds with controlled and reproducible macro- and micro-structure that improve the quality of the restored tissue to favor spontaneous repair. However, when persistent inflammation occurs, the physiological tissue healing capacity is reduced, like in the presence of pathologies like diabetes, vascular diseases, chronic infection, and others. In these circumstances, the bioavailability of therapeutic adjuncts like the growth factors in addition to the standard treatments represents undoubtedly a promising strategy to accelerate the healing of skin lesions. Precisely designed polysaccharide scaffolds obtained by 3D printing represent a robust platform that can be further implemented with the controlled delivery of bioactive adjuncts. Human elastin-like polypeptides (HELPs) are stimuli-responsive biopolymers. Their structure allows the integration of domains endowed with biological functionality, making them attractive compounds to prepare composites with smart properties. In the present study, 3D-printed alginate and chitosan scaffolds were combined with the HELP components. The HELP biopolymer was fused to the epidermal growth factor (EGF) as the bioactive domain. Different constructs were prepared and the stimuli-responsive behavior as well as the biological activity were evaluated, suggesting that these smart bioactive composites are suitable to realize multifunctional dressings that sustain the local release of therapeutic adjuncts

Phenolic constituents levels in cv. Agria potato under microwave processing.

Phenolic compounds have long been associated with flavour and colour characteristics of fruits and vegetables and actually attract a great interest due to their health protecting properties. In this work, the influence of different power input of microwave baking on the amount of protocatechuic acid (1), tryptophan (2), chlorogenic acid (3), neo-chlorogenic acid (4), and cryptochlorogenic acid (5) marker compounds left over in peeled and not-peeled potatoes (Solanum tuberosus L., Agria cultivar) was assessed. A high-performance liquid chromatographic (HPLC) method with diode-array detection (DAD) was used to identify and quantify compounds 1e5. Other tubers were used to perform analysis of raw potato (control) and traditional baking potatoes products (boiled potatoes). Dielectric behavior of the irradiated tubers was also investigated to emphasize if microwaves treatments are suitable for food processing in terms of nutritional factor preservation. The main results of this work consist on the relevance of the water contents in potato matrixes during the baking processes since these have a crucial role to keep lossy features, to avoid thermal damages and to preserve antioxidant. The best compromise in terms of short baking time and reduced water and phenolic losses is obtained using 500 W as power input

Alginate/human elastin-like polypeptide composite films with antioxidant properties for potential wound healing application

In this contribution we describe the preparation and characterization of a series of cross-linked films based on the combination of an elastin-derived biomimetic polypeptide (Human elastin-like polypeptide (HELP)) with alginate (ALG) to obtain a composite with enhanced properties. ALG/HELP composite films loaded with the hydrophobic natural antioxidant curcumin were prepared by solvent casting method followed by the cross-linking with calcium chloride. The compatibility between the two components as well as the final properties was evaluated. The micro-morphological study of films showed a homogeneous structure, but the film tensile strength decrease with HELP content and elongation at break was adversely affected by biopolymer addition. Spectroscopic and thermal analyses confirmed an interaction between ALG and HELP which also causes a modification in swelling kinetics and faster degradation. Moreover, the study of curcumin release showed a controlled delivery up to 10\u202fdays with a faster release rate in the presence of HELP. Human Dermal Fibroblasts (hDF) were used to test the in vitro cytocompatibility. The antioxidant activity correlated to the increase of HELP content suggested the applicability of these composites to develop smart biomaterials. Overall, these features indicated how this composite material has considerable potential as customizable platforms for various biomedical applications