Sulfur and oxygen isotope insight into microbial sulfur metabolism

Dissimilatory microbial sulfate reduction (MSR) is a process where microbes utilize sulfate as an electron acceptor to oxidize organic matter in anoxic environments. In modern marine sediments, MSR is responsible for over half of the anoxic oxidation of organic matter. In addition, the anaerobic oxidation of methane (AOM) is coupled largely to MSR in marine sediments, in a process called sulfate-driven AOM, preventing the Earth’s oceans from becoming a major source of this potent greenhouse gas to the surface. The aim of this thesis was to elucidate the pathways of MSR coupled to organic matter oxidation and AOM by using a largely geochemical approach; specifically the chemical and isotope (C, S, O) variation in pure-culture sulfate reducing bacteria and sedimentary pore fluid profiles. I use this data to better understand how sulfate is involved in different diagenetic processes. The most powerful tool that used was the combined measurement and modeling of sulfur and oxygen isotopes in sulfate (δ18OSO4 and δ34SSO4, respectively), which enabled me to model how sulfate is recycled within pure cultures as well as the natural environment

The effect of anaerobic remineralization of the seagrass Halophila stipulacea on porewater biogeochemistry in the Gulf of Aqaba

IntroductionSeagrasses form oxidizing microenvironments around their roots, creating complex and strong redox gradients, thus affecting the rates of microbial carbon mineralization in their surrounding sediments. Since seagrasses are continuously being lost worldwide, a deeper understanding of the changes that occur within different seagrass sediments following the disappearance of the plants is of ecological and global importance.MethodsWe conducted a slurry experiment with sediments that have different characteristics from the northern tip of Gulf of Aqaba; the different sediments included different compartments of the tropical seagrass Halophila stipulacea (old and young leaves, rhizomes, or roots). We measured the changes over time in dissolved inorganic carbon (DIC), alkalinity, ferrous iron (Fe2+), hydrogen sulfide (H2S), sulfate (SO42-), and sulphur isotope ratios in sulfate within water. These measurements were used to calculate the rate of remineralization of each seagrass compartment, allowing us to predict the potential effects of the disappearance of different H. stipulacea compartments on key microbial processes in the surrounding environment.ResultsWe show that H. stipulacea’s rhizomes had the fastest decomposition rates, followed by the young leaves, roots, and old leaves (which also indicates the preservation potential of old leaves).DiscussionHigh concentrations of hydrogen sulfide were detected only in the slurries containing rhizomes and young leaves. High sulfide concentrations can lead to seagrass mortality and cause a positive feedback loop where the loss of seagrass due to sulfide generates further sulfide accumulation. This positive feedback loop can also be further reinforced by the loss of burrowing fauna in the sediment. This emphasizes the importance of understanding the extent of different pathways of seagrass disappearance on the surrounding environment and other geochemical feedbacks

Digging Deeper: Bioturbation increases the preserved sulfur isotope fractionation

Bioturbation enhances mixing between the seafloor and overlying ocean due to changes the redox state of the sediment and influences the biogeochemical cycling of redox-sensitive elements such as sulfur. Before the widespread appearance of burrowing fauna over the Proterozoic-Phanerozoic transition, marine sediments were largely undisturbed and transport of material across the sediment-water interface was diffusion-dominated. Through both a microcosm experiment and numerical model, we show that the effect of bioturbation on marine sediments is to enhance the drawdown of sulfate from the water column into the sediment and thus “open-up” the sedimentary system. The key finding is that bioturbation increases the difference between the isotopic signature of seawater sulfate and pore water sulfide, the latter of which is preserved in sedimentary sulfide minerals. Our study empirically demonstrates a long-held assumption and helps identify the isotopic impact of bioturbation in the geological record and its environmental effects in modern marine systems

The microbially driven formation of siderite in salt marsh sediments

We employ complementary field and laboratory‐based incubation techniques to explore the geochemical environment where siderite concretions are actively forming and growing, including solid‐phase analysis of the sediment, concretion, and associated pore fluid chemistry. These recently formed siderite concretions allow us to explore the geochemical processes that lead to the formation of this less common carbonate mineral. We conclude that there are two phases of siderite concretion growth within the sediment, as there are distinct changes in the carbon isotopic composition and mineralogy across the concretions. Incubated sediment samples allow us to explore the stability of siderite over a range of geochemical conditions. Our incubation results suggest that the formation of siderite can be very rapid (about two weeks or within 400 hr) when there is a substantial source of iron, either from microbial iron reduction or from steel material; however, a source of dissolved iron is not enough to induce siderite precipitation. We suggest that sufficient alkalinity is the limiting factor for siderite precipitation during microbial iron reduction while the lack of dissolved iron is the limiting factor for siderite formation if microbial sulfate reduction is the dominant microbial metabolism. We show that siderite can form via heated transformation (at temperature 100°C for 48 hr) of calcite and monohydrocalcite seeds in the presence of dissolved iron. Our transformation experiments suggest that the formation of siderite is promoted when carbonate seeds are present

Coupled sulfur and oxygen isotope insight into bacterial sulfate reduction in the natural environment

We present new sulfur and oxygen isotope data in sulfate (δ34SSO4 and δ18OSO4 respectively), from globally distributed marine and estuary pore fluids. We use this data with a model of the biochemical steps involved in bacterial sulfate reduction (BSR) to explore how the slope on a δ18OSO4 vs. δ34SSO4 plot relates to the net sulfate reduction rate (nSRR) across a diverse range of natural environments. Our data demonstrate a correlation between the nSRR and the slope of the relative evolution of oxygen and sulfur isotopes (δ18OSO4 vs. δ34SSO4) in the residual sulfate pool, such that higher nSRR results in a lower slope (sulfur isotopes increase faster relative to oxygen isotopes). We combine these results with previously published literature data to show that this correlation scales over many orders of magnitude of nSRR. Our model of the mechanism of BSR indicates that the critical parameter for the relative evolution of oxygen and sulfur isotopes in sulfate during BSR in natural environments is the rate of intracellular sulfite oxidation. In environments where sulfate reduction is fast, such as estuaries and marginal marine environments, this sulfite reoxidation is minimal, and the δ18OSO4 increases more slowly relative to the δ34SSO4. In contrast, in environments where sulfate reduction is very slow, such as deep sea sediments, our model suggests sulfite reoxidation is far more extensive, with as much as 99% of the sulfate being thus recycled; in these environments the δ18OSO4 increases much more rapidly relative to the δ34SSO4. We speculate that the recycling of sulfite plays a physiological role during BSR, helping maintain microbial activity where the availability of the electron donor (e.g. available organic matter) is low

Annual sulfur cycle in a warm monomictic lake with sub-millimolar sulfate concentrations.

We studied the annual variability of the concentration and isotopic composition of main sulfur species and sulfide oxidation intermediates in the water column of monomictic fresh-water Lake Kinneret. Sulfate concentrations in the lake are <1 mM and similar to concentrations that are proposed to have existed in the Paleoproterozoic ocean. The main goal of this research was to explore biogeochemical constrains of sulfur cycling in the modern low-sulfate fresh-water lake and to identify which processes may be responsible for the isotopic composition of sulfur species in the Precambrian sedimentary rocks. RESULTS: At the deepest point of the lake, the sulfate inventory decreases by more than 20% between March and December due to microbial sulfate reduction leading to the buildup of hydrogen sulfide. During the initial stages of stratification, sulfur isotope fractionation between sulfate and hydrogen sulfide is low (11.6 ‰) and sulfur oxyanions (e.g. thiosulfate and sulfite) are the main products of the incomplete oxidation of hydrogen sulfide. During the stratification and at the beginning of the lake mixing (July-December), the inventory of hydrogen sulfide as well as of sulfide oxidation intermediates in the water column increases and is accompanied by an increase in sulfur isotope fractionation to 30 ± 4 ‰ in October. During the period of erosion of the chemocline, zero-valent sulfur prevails over sulfur oxyanions. In the terminal period of the mixing of the water column (January), the concentration of hydrogen sulfide decreases, the inventory of sulfide oxidation intermediates increases, and sulfur isotope fractionation decreases to 20 ± 2 ‰. CONCLUSIONS: Sulfide oxidation intermediates are present in the water column of Lake Kinneret at all stages of stratification with significant increase during the mixing of the water column. Hydrogen sulfide inventory in the water column increases from March to December, and sharply decreases during the lake mixis in January. Sulfur isotope fractionation between sulfate and hydrogen sulfide as well as concentrations of sulfide oxidation intermediates can be explained either by microbial sulfate reduction alone or by microbial sulfate reduction combined with microbial disproportionation of sulfide oxidation intermediates. Our study of sulfur cycle in Lake Kinneret may be useful for understanding the range of biogeochemical processes in low sulfate oceans over Earth history

Assessing Sedimentary Boundary Layer Calcium Carbonate Precipitation and Dissolution Using the Calcium Isotopic Composition of Pore Fluids

We present pore fluid geochemistry, including major ion and trace metal concentrations and the isotopic composition of pore fluid calcium and sulfate, from the uppermost meter of sediments from the Gulf of Aqaba (Northeast Red Sea) and the Iberian Margin (North Atlantic Ocean). In both the locations, we observe strong correlations among calcium, magnesium, strontium, and sulfate concentrations as well as the sulfur isotopic composition of sulfate and alkalinity, suggestive of active changes in the redox state and pH that should lead to carbonate mineral precipitation and dissolution. The calcium isotope composition of pore fluid calcium (δ44Ca) is, however, relatively invariant in our measured profiles, suggesting that carbonate mineral precipitation is not occurring within the boundary layer at these sites. We explore several reasons why the pore fluid δ44Ca might not be changing in the studied profiles, despite changes in other major ions and their isotopic composition, including mixing between the surface and deep precipitation of carbonate minerals below the boundary layer, the possibility that active iron and manganese cycling inhibits carbonate mineral precipitation, and that mineral precipitation may be slow enough to preclude calcium isotope fractionation during carbonate mineral precipitation. Our results suggest that active carbonate dissolution and precipitation, particularly in the diffusive boundary layer, may elicit a more complex response in the pore fluid δ44Ca than previously thought

Impact of Aeolian Dry Deposition of Reactive Iron Minerals on Sulfur Cycling in Sediments of the Gulf of Aqaba

The Gulf of Aqaba is an oligotrophic marine system with oxygen-rich water column and organic carbon-poor sediments (≤0.6% at sites that are not influenced by anthropogenic impact). Aeolian dust deposition from the Arabian, Sinai, and Sahara Deserts is an important source of sediment, especially at the deep-water sites of the Gulf, which are less affected by sediment transport from the Arava Desert during seasonal flash floods. Microbial sulfate reduction in sediments is inferred from the presence of pyrite (although at relatively low concentrations), the presence of sulfide oxidation intermediates, and by the sulfur isotopic composition of sulfate and solid-phase sulfides. Saharan dust is characterized by high amounts of iron minerals such as hematite and goethite. We demonstrated, that the resulting high sedimentary content of reactive iron(III) (hydr)oxides, originating from this aeolian dry deposition of desert dust, leads to fast re-oxidation of hydrogen sulfide produced during microbial sulfate reduction and limits preservation of reduced sulfur in the form of pyrite. We conclude that at these sites the sedimentary sulfur cycle may be defined as cryptic

Large sulfur isotope fractionation by bacterial sulfide oxidation.

A sulfide-oxidizing microorganism, Desulfurivibrio alkaliphilus (DA), generates a consistent enrichment of sulfur-34 (34 S) in the produced sulfate of +12.5 per mil or greater. This observation challenges the general consensus that the microbial oxidation of sulfide does not result in large 34 S enrichments and suggests that sedimentary sulfides and sulfates may be influenced by metabolic activity associated with sulfide oxidation. Since the DA-type sulfide oxidation pathway is ubiquitous in sediments, in the modern environment, and throughout Earth history, the enrichments and depletions in 34 S in sediments may be the combined result of three microbial metabolisms: microbial sulfate reduction, the disproportionation of external sulfur intermediates, and microbial sulfide oxidation

The Sedimentary Carbon-Sulfur-Iron Interplay – A Lesson From East Anglian Salt Marsh Sediments

We explore the dynamics of the subsurface sulfur, iron and carbon cycles in salt marsh sediments from East Anglia, United Kingdom. We report measurements of pore fluid and sediment geochemistry, coupled with results from laboratory sediment incubation experiments, and develop a conceptual model to describe the influence of bioturbation on subsurface redox cycling. In the studied sediments the subsurface environment falls into two broadly defined geochemical patterns – iron-rich sediments or sulfide-rich sediments. Within each sediment type nearly identical pore fluid and solid phase geochemistry (in terms of concentrations of iron, sulfate, sulfide, dissolved inorganic carbon (DIC), and the sulfur and oxygen isotope compositions of sulfate) are observed in sediments that are hundreds of kilometers apart. Strictly iron-rich and strictly sulfide-rich sediments, despite their substantive geochemical differences, are observed within spatial distances of less than five meters. We suggest that this bistable system results from a series of feedback reactions that determine ultimately whether sediments will be sulfide-rich or iron-rich. We suggest that an oxidative cycle in the iron-rich sediment, driven by bioirrigation, allows rapid oxidation of organic matter, and that this irrigation impacts the sediment below the immediate physical depth of bioturbation. This oxidative cycle yields iron-rich sediments with low total organic carbon, dominated by microbial iron reduction and no methane production. In the absence of bioirrigation, sediments in the salt marsh become sulfide-rich with high methane concentrations. Our results suggest that the impact of bioirrigation not only drives recycling of sedimentary material but plays a key role in sedimentary interactions among iron, sulfur and carbon