2,394 research outputs found

    Molecular Dynamics Simulations of a Pressure-induced Glass Transition

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    We simulate the compression of a two-component Lennard-Jones liquid at a variety of constant temperatures using a molecular dynamics algorithm in an isobaric-isothermal ensemble. The viscosity of the liquid increases with pressure, undergoing a broadened transition into a structurally arrested, amorphous state. This transition, like the more familiar one induced by cooling, is correlated with a significant increase in icosahedral ordering. In fact, the structure of the final state, as measured by an analysis of the bonding, is essentially the same in the glassy, frozen state whether produced by squeezing or by cooling under pressure. We have computed an effective hard-sphere packing fraction at the transition, defining the transition pressure or temperature by a cutoff in the diffusion constant, analogous to the traditional laboratory definition of the glass transition by an arbitrary, low cutoff in viscosity. The packing fraction at this transition point is not constant, but is consistently higher for runs compressed at higher temperature. We show that this is because the transition point defined by a constant cutoff in the diffusion constant is not the same as the point of structural arrest, at which further changes in pressure induce no further structural changes, but that the two alternate descriptions may be reconciled by using a thermally activated cutoff for the diffusion constant. This enables estimation of the characteristic activation energy for diffusion at the point of structural arrest.Comment: Latex using Revtex macro

    Fully depleted and backside biased monolithic CMOS image sensor

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    We are presenting a novel concept for a fully depleted, monolithic, pinned photodiode CMOS image sensor using reverse substrate bias. The principle of operation allows the manufacture of backside illuminated CMOS sensors with active thickness in excess of 100 µm. This helps increase the QE at near-IR and soft X-ray wavelengths, while preserving the excellent characteristics associated with the pinned photodiode sensitive elements. Such sensors are relevant to a wide range of applications, including scientific imaging, astronomy, Earth observation and surveillance. A prototype device with 10 µm and 5.4 µm pixels using this concept has been designed and is being manufactured on a 0.18 µm CMOS image sensor process. Only one additional implantation step has been introduced to the normal manufacturing flow to make this device. The paper discusses the design of the sensor and the challenges that had to be overcome to realise it in practice, and in particular the method of achieving full depletion without parasitic substrate currents. It is expected that this new technology can be competitive with modern backside illuminated thick CCDs for use at visible to near-IR telescopes and synchrotron light sources

    The physiology of polar marine zooplankton

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    The polar marine environment is characterised by low stable temperatures with seasonal variations ranging from ±3°C at lower latitudes to only ±0.2°C at high latitudes. The Arctic basin is dominated by multi-year ice. whereas the Antarctic is subject to large seasonal changes in the cover by annual sea ice. Primary production is intensely seasonal nearshore but probably less so in offshore waters where significant production is associated with the marginal ice zone. Oxygen consumption in polar zooplankton is low compared with temperate and tropical species. Annual growth rates are generally slow and, especially in herbivores, highly seasonal. It is likely that fast growth rates are possible for polar zooplankton in areas of high food availability such as ice-edge blooms, but these growth rates are not usually achieved in the more oligotrophic open-ocean areas. Lipid stores in polar herbivorous zooplankton are generally high, although some euphausiids and gelatinous zooplankton also rely on degrowth to provide energy over winter. Ice-edge blooms are of great importance to the polar marine food web although the quantitative significance of winter feeding under ice has yet to be resolved. Comparison of data on lipid storage and oxygen consumption for polar zooplankton indicates that there are large differences in the energy requirements of benthos and crustacean zooplankton. This is probably related to the high metabolic cost of staying in the water column. In contrast gelatinous zooplankton (salps, ctenophores. medusae and siphonophores) have a low energy throughput, related to a body composition which renders them essentially neutral in buoyancy and a slow but efficient means of locomotion. Under good feeding conditions many species can therefore grow and reproduce very rapidly. This emphasises the distinct energetic regime of gelatinous zooplankton, now known to be a group of major ecological importance in most waters of the world

    Limpet feeding rate and the consistency of physiological response to temperature

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    Thermal reaction norms are fundamental relationships for geographic comparisons of organism response to temperature. They are shaped by an organism’s environmental history and provide insights into both the global patterns of thermal sensitivity and the physiological mechanisms underlying temperature response. In this study we conducted the first measure of the thermal reaction norm for feeding, comparing the radula rasping rate of two tropical and one polar limpet species. The consistency of thermal response was tested through comparisons with limpet duration tenacity. Feeding and duration tenacity of limpets are ecologically important muscular mechanisms that rely on very different aspects of muscle physiology, repeated concentric (shortening) and isometric (fixed length) contraction of muscles, respectively. In these limpets the thermal reaction norms of feeding limpets were best described by a single break point at a maximum temperature with linear declines at higher (Siphonaria atra) or lower temperatures (Nacella concinna and Cellana radiata) rather than a bell-shaped curve. The thermal reaction norms for duration tenacity were similar in the two tropical limpets. However, the rasping rate in Antarctic N. concinna increased linearly with temperature up to a maximum at 12.3 °C (maximal range 8.5–12.3 °C) when feeding stopped. In contrast, duration tenacity in N. concinna was maximal at 1.0 °C (−0.6 to 3.8 °C) and linearly decreased with increasing temperature. The thermal reaction norms of muscular activity were, therefore, inconsistent within and between species, indicating that different mechanisms likely underlie different aspects of species sensitivities to temperature

    Getting More from Less in Defined Benefit Plans: Three Levers for a Low-Return World

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    As global interest rates hover near historic lows, defined benefit pension plan sponsors must grapple with the prospect of lower investment returns. This paper examines three levers that can enhance portfolio outcomes in a low-return world. The levers include: increased contributions; reduced investment costs; and increased portfolio risk. We use portfolio simulations based on a stochastic asset class forecasting model to evaluate each lever according to two criteria—its magnitude of impact and the certainty that this impact will be realized. Our analysis indicates that increased contributions have the greatest and most certain impact. Reduced costs have a more modest, but equally certain impact. Increased risk can deliver a significant impact, but with the least certainty

    Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration

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    Many species of the bacterial Shewanella genus are notable for their ability to respire in anoxic environments utilizing insoluble minerals of Fe(III) and Mn(IV) as extracellular electron acceptors. In Shewanella oneidensis, the process is dependent on the decahaem electron-transport proteins that lie at the extracellular face of the outer membrane where they can contact the insoluble mineral substrates. These extracellular proteins are charged with electrons provided by an inter-membrane electron-transfer pathway that links the extracellular face of the outer membrane with the inner cytoplasmic membrane and thereby intracellular electron sources. In the present paper, we consider the common structural features of two of these outer-membrane decahaem cytochromes, MtrC and MtrF, and bring this together with biochemical, spectroscopic and voltammetric data to identify common and distinct properties of these prototypical members of different clades of the outer-membrane decahaem cytochrome superfamily

    Dietary long-chain, but not medium-chain, triglycerides impair exercise performance and uncouple cardiac mitochondria in rats.

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    Short-term consumption of a high-fat diet impairs exercise capacity in both rats and humans, and increases expression of the mitochondrial uncoupling protein, UCP3, in rodent cardiac and skeletal muscle via activation of the transcription factor, peroxisome proliferator-activated receptor α (PPARα). Unlike long-chain fatty acids however, medium-chain fatty acids do not activate PPARα and do not increase muscle UCP3 expression. We therefore investigated exercise performance and cardiac mitochondrial function in rats fed a chow diet (7.5% kcal from fat), a long-chain triglyceride (LCT) rich diet (46% kcal from LCTs) or a medium-chain triglyceride (MCT) rich diet (46% kcal from MCTs). Rats fed the LCT-rich diet for 15 days ran 55% less far than they did at baseline, whereas rats fed the chow or MCT-rich diets neither improved nor worsened in their exercise capacities. Moreover, consumption of an LCT-rich diet increased cardiac UCP3 expression by 35% and decreased oxidative phosphorylation efficiency, whereas consumption of the MCT-rich diet altered neither UCP3 expression nor oxidative phosphorylation efficiency. Our results suggest that the negative effects of short-term high-fat feeding on exercise performance are predominantly mediated by long-chain rather than medium-chain fatty acids, possibly via PPARα-dependent upregulation of UCP3.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

    Design of a split Hopkinson pressure bar with partial lateral confinement

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    This paper presents the design of a modified split Hopkinson pressure bar (SHPB) where partial lateral con- finement of the specimen is provided by the inertia of a fluid annulus contained in a long steel reservoir. In contrast to unconfined testing, or a constant cell pressure applied before axial loading, lateral restraint is permitted to develop throughout the axial loading: this enables the high-strain-rate shear behaviour of soils to be characterised under conditions which are more representative of buried explosive events. A pressure transducer located in the wall of the reservoir allows lateral stresses to be quantified, and a dispersion-correction technique is used to provide accurate measurements of axial stress and strain. Preliminary numerical modelling is utilised to inform the experimental design, and the capability of the apparatus is demonstrated with specimen results for a dry quartz sand

    Resource-Bound Quantification for Graph Transformation

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    Graph transformation has been used to model concurrent systems in software engineering, as well as in biochemistry and life sciences. The application of a transformation rule can be characterised algebraically as construction of a double-pushout (DPO) diagram in the category of graphs. We show how intuitionistic linear logic can be extended with resource-bound quantification, allowing for an implicit handling of the DPO conditions, and how resource logic can be used to reason about graph transformation systems
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