Phosphorylation and Dephosphorylation of the RIG-I-like Receptors: A Safety Latch on a Fateful Pathway

Activation of antiviral responses by RNA sensors RIG-I and MDA5 must be stringently controlled. In this issue of Immunity, Wies et al. (2013) show that a requirement for activation-induced dephosphorylation of these proteins reinforces this restriction

Recruitment of the IKK Signalosome to the p55 TNF Receptor RIP and A20 Bind to NEMO (IKKγ) upon Receptor Stimulation

AbstractThe adapter protein RIP plays a crucial role in NF-κB activation by TNF. Here we show that triggering of the p55 TNF receptor induces binding of RIP to NEMO (IKKγ), a component of the I-κ-B-kinase (IKK) “signalosome” complex, as well as recruitment of RIP to the receptor together with the three major signalosome components, NEMO, IKK1 and IKK2, and some kind of covalent modification of the recruited RIP molecules. It also induces binding of NEMO to the signaling inhibitor A20, and recruitment of A20 to the receptor. Enforced expression of NEMO in cells revealed that NEMO can both promote and block NF-κB activation and dramatically augments the phosphorylation of c-Jun. The findings suggest that the signaling activities of the IKK signalosome are regulated through binding of NEMO to RIP and A20 within the p55 TNF receptor complex

Regulation of B cell homeostasis and activation by the tumor suppressor gene CYLD

B cell homeostasis is regulated by multiple signaling processes, including nuclear factor-κB (NF-κB), BAFF-, and B cell receptor signaling. Conditional disruption of genes involved in these pathways has shed light on the mechanisms governing signaling from the cell surface to the nucleus. We describe a novel mouse strain that expresses solely and excessively a naturally occurring splice variant of CYLD (CYLDex7/8 mice), which is a deubiquitinating enzyme that is integral to NF-κB signaling. This shorter CYLD protein lacks the TRAF2 and NEMO binding sites present in full-length CYLD. A dramatic expansion of mature B lymphocyte populations in all peripheral lymphoid organs occurs in this strain. The B lymphocytes themselves exhibit prolonged survival and manifest a variety of signaling disarrangements that do not occur in mice with a complete deletion of CYLD. Although both the full-length and the mutant CYLD are able to interact with Bcl-3, a predominant nuclear accumulation of Bcl-3 occurs in the CYLD mutant B cells. More dramatic, however, is the accumulation of the NF-κB proteins p100 and RelB in CYLDex7/8 B cells, which, presumably in combination with nuclear Bcl-3, results in increased levels of Bcl-2 expression. These findings suggest that CYLD can both positively and negatively regulate signal transduction and homeostasis of B cells in vivo, depending on the expression of CYLD splice variants

Ultrafast vibrational control of organohalide perovskite optoelectronic devices using vibrationally promoted electronic resonance

Vibrational control (VC) of photochemistry through the optical stimulation of structural dynamics is a nascent concept only recently demonstrated for model molecules in solution. Extending VC to state-of-the-art materials may lead to new applications and improved performance for optoelectronic devices. Metal halide perovskites are promising targets for VC due to their mechanical softness and the rich array of vibrational motions of both their inorganic and organic sublattices. Here, we demonstrate the ultrafast VC of FAPbBr3 perovskite solar cells via intramolecular vibrations of the formamidinium cation using spectroscopic techniques based on vibrationally promoted electronic resonance. The observed short (~300 fs) time window of VC highlights the fast dynamics of coupling between the cation and inorganic sublattice. First-principles modelling reveals that this coupling is mediated by hydrogen bonds that modulate both lead halide lattice and electronic states. Cation dynamics modulating this coupling may suppress non-radiative recombination in perovskites, leading to photovoltaics with reduced voltage losses

Bright triplet excitons in lead halide perovskites

Nanostructured semiconductors emit light from electronic states known as excitons[1]. According to Hund's rules[2], the lowest energy exciton in organic materials should be a poorly emitting triplet state. Analogously, the lowest exciton level in all known inorganic semiconductors is believed to be optically inactive. These 'dark' excitons (into which the system can relax) hinder light-emitting devices based on semiconductor nanostructures. While strategies to diminish their influence have been developed[3-5], no materials have been identified in which the lowest exciton is bright. Here we show that the lowest exciton in quasi-cubic lead halide perovskites is optically active. We first use the effective-mass model and group theory to explore this possibility, which can occur when the strong spin-orbit coupling in the perovskite conduction band is combined with the Rashba effect [6-10]. We then apply our model to CsPbX3 (X=Cl,Br,I) nanocrystals[11], for which we measure size- and composition-dependent fluorescence at the single-nanocrystal level. The bright character of the lowest exciton immediately explains the anomalous photon-emission rates of these materials, which emit 20 and 1,000 times faster[12] than any other semiconductor nanocrystal at room[13-16] and cryogenic[17] temperatures, respectively. The bright exciton is further confirmed by detailed analysis of the fine structure in low-temperature fluorescence spectra. For semiconductor nanocrystals[18], which are already used in lighting[19,20], lasers[21,22], and displays[23], these optically active excitons can lead to materials with brighter emission and enhanced absorption. More generally, our results provide criteria for identifying other semiconductors exhibiting bright excitons with potentially broad implications for optoelectronic devices.Comment: 14 pages and 3 figures in the main text, Methods and extended data 16 pages which include 11 figures, and supporting information 28 page

Unitarity approach to the mass-dependent fit of 3 π

We derive a unitarized model for the peripheral production of the three-pion system in the isobar approximation. The production process takes into account long-range t-channel pion exchange. The K-matrix approach is chosen for the parameterization of the scattering amplitude. Five coupled channels are used to fit the COMPASS spin-density matrices for the JPCMϵ = 2−+0+ sector. Preliminary results of the fit are presented

Caspase-8 deficiency in epidermal keratinocytes triggers an inflammatory skin disease

Expression of enzymatically inactive caspase-8, or deletion of caspase-8 from basal epidermal keratinocytes, triggers chronic skin inflammation in mice. Unlike similar inflammation resulting from arrest of nuclear factor κB activation in the epidermal cells, the effect induced by caspase-8 deficiency did not depend on TNF, IL-1, dermal macrophage function, or expression of the toll-like receptor adapter proteins MyD88 or TRIF. Both interferon regulatory factor (IRF) 3 and TANK-binding kinase were constitutively phosphorylated in the caspase-8–deficient epidermis, and knockdown of IRF3 in the epidermis-derived cells from these mice abolished the expression of up-regulated genes. Temporal and spatial analyses of the alterations in gene expression that result from caspase-8 deficiency reveal that the changes are initiated before birth, around the time that cornification develops, and occur mainly in the suprabasal layer. Finally, we found that caspase-8–deficient keratinocytes display an enhanced response to gene activation by transfected DNA. Our findings suggest that an enhanced response to endogenous activators of IRF3 in the epidermis, presumably generated in association with keratinocyte differentiation, contributes to the skin inflammatory process triggered by caspase-8 deficiency

Bright triplet excitons in caesium lead halide perovskites

Nanostructured semiconductors emit light from electronic states known as excitons. For organic materials, Hund’s rules state that the lowest-energy exciton is a poorly emitting triplet state. For inorganic semiconductors, similar rules predict an analogue of this triplet state known as the ‘dark exciton’. Because dark excitons release photons slowly, hindering emission from inorganic nanostructures, materials that disobey these rules have been sought. However, despite considerable experimental and theoretical efforts, no inorganic semiconductors have been identified in which the lowest exciton is bright. Here we show that the lowest exciton in caesium lead halide perovskites (CsPbX_3, with X = Cl, Br or I) involves a highly emissive triplet state. We first use an effective-mass model and group theory to demonstrate the possibility of such a state existing, which can occur when the strong spin–orbit coupling in the conduction band of a perovskite is combined with the Rashba effect. We then apply our model to CsPbX_3 nanocrystals, and measure size- and composition-dependent fluorescence at the single-nanocrystal level. The bright triplet character of the lowest exciton explains the anomalous photon-emission rates of these materials, which emit about 20 and 1,000 times faster than any other semiconductor nanocrystal at room and cryogenic temperatures, respectively. The existence of this bright triplet exciton is further confirmed by analysis of the fine structure in low-temperature fluorescence spectra. For semiconductor nanocrystals, which are already used in lighting, lasers and displays, these excitons could lead to materials with brighter emission. More generally, our results provide criteria for identifying other semiconductors that exhibit bright excitons, with potential implications for optoelectronic devices

A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047

<p>Abstract</p> <p>Background</p> <p>Polyamines regulate important cellular functions and polyamine dysregulation frequently occurs in cancer. The objective of this study was to use a systems approach to study the relative effects of PG-11047, a polyamine analogue, across breast cancer cells derived from different patients and to identify genetic markers associated with differential cytotoxicity.</p> <p>Methods</p> <p>A panel of 48 breast cell lines that mirror many transcriptional and genomic features present in primary human breast tumours were used to study the antiproliferative activity of PG-11047. Sensitive cell lines were further examined for cell cycle distribution and apoptotic response. Cell line responses, quantified by the GI₅₀(dose required for 50% relative growth inhibition) were correlated with the omic profiles of the cell lines to identify markers that predict response and cellular functions associated with drug sensitivity.</p> <p>Results</p> <p>The concentrations of PG-11047 needed to inhibit growth of members of the panel of breast cell lines varied over a wide range, with basal-like cell lines being inhibited at lower concentrations than the luminal cell lines. Sensitive cell lines showed a significant decrease in S phase fraction at doses that produced little apoptosis. Correlation of the GI₅₀values with the omic profiles of the cell lines identified genomic, transcriptional and proteomic variables associated with response.</p> <p>Conclusions</p> <p>A 13-gene transcriptional marker set was developed as a predictor of response to PG-11047 that warrants clinical evaluation. Analyses of the pathways, networks and genes associated with response to PG-11047 suggest that response may be influenced by interferon signalling and differential inhibition of aspects of motility and epithelial to mesenchymal transition.</p> <p>See the related commentary by Benes and Settleman: <url>http://www.biomedcentral.com/1741-7015/7/78</url></p

СРАВНИТЕЛЬНАЯ ХАРАКТЕРИСТИКА РАЗЛИЧНЫХ ВАРИАНТОВ КОЛИЧЕСТВЕННОГО ХРОМАТОГРАФИЧЕСКОГО АНАЛИЗА МЕТОДОМ ДВОЙНОЙ СТАНДАРТНОЙ ДОБАВКИ

Different algorithms for processing the quantitative gas chromato­gra­­phic ana­lysis data using the double standard addition method are compared for their accuracy. Three principal approaches are possible for such processing: I – simple comparison of values determined by sing­le and double standard additions, II – approximation of «peak area of ana­lyte» (S) – «mass of standard addition» (madd) depen­den­ce by the least squa­res method [linear reg­res­sion, m(S)], and III – independent quantification of analyte with both standard additi­ons follo­wed by the linear extrapolation of two sub-results on the so-cal­led «zero standard addi­tion», mx(madd ® 0). It is concluded that the quantitation results obtained using the various modes of the method are comparable in accuracy, but somewhat underestimated relative to the specified amounts of analytes. The principal reason of such systematic errors is the eva­po­ration of the solvent during the successive injecting of the same samples into the gas chroma­to­graph. Due to this reason the peak are­as, measured after the standard addition, appear to be slight­­ly increased and this leads to the systematic underestimation of the results. The second (less impor­tant) factor is the small increa­se of the samp­le volumes due to the addition of the compo­nents to be determined. It is confirmed that the systematic errors of different modes of standard addition are not exceeding the values of their random uncertainties. The op­ti­mal results (considering their signs of deviations) are provided using the double standard addition method with extrapolation of sub-results on «zero standard addition». In order to exclude the possible influence of «human factor» (increasing the re­sults precision during the series of analyses of similar samples due to the rising experience of analytical chemists) all parallel measurements have been per­for­med by bachelor students of  the Chemistry Ins­titute of  the St. Petersburg State University in the course of their laboratory practical works in chromatography. Such organization of experiments increases their credibility as it excluded the dependence of the results on the qualification of chemists.Keywords: Quantitative chromatographic analysis, double standard addition, different kinds of data processing, «human factor» for parallel measurementsDOI: http://dx.doi.org/10.15826/analitika.2021.25.2.010 Igor G. Zenkevich, Darina D. Barkhatova, Maria N. Belysheva, Nikita A. Kaminskii, Elizabet M. Karchuganova, Anastasia V. Klaving, Alexander A. Kovalenko, Vasilisa S. Krivovicheva, Artem A. Kuz’min, Maria V. Mel’nik, Polina S. Paramonova, Roman A. Popov, Vassylii V. Potapenkov, Artem A. Rashevskii, Alexandra A. Sysoeva, Irina I. Fedorova, Andrew A. Firsov St. Petersburg State University, Institute for Chemistry, Universitetskii prosp., 26,St. Petersburg 198504, Russian FederationРазличные варианты обработки результатов количественного газохроматогра­фи­ческого анализа способом двойной стандартной добавки сопоставлены по точно­сти. Три основных из них: I – простое сравнение данных, получаемых с использо­ва­нием однократной и двойной добавок, II – аппрокси­ма­ция зависимости m(S) в ко­ор­динатах «площадь пика оп­ре­де­ляемого компонента» (S) – «масса добав­ки» (mдоб) методом наименьших квадратов по уравнению линей­ной регрессии и III–вычис­ле­ние количеств определяемых компонентов (mx) по каж­­дой из стандарт­ных до­ба­вок с последующей линейной экстраполяцией их зна­чений на «ну­ле­вую» стан­дар­т­ную до­­бавку, mx(mдоб® 0). Показано, что результаты определений в различ­ных ва­ри­ан­­тах стандартных добавок сопоставимы по точно­с­ти, но несколько за­ни­жены относительно за­дан­ных количеств аналитов. Главной причиной таких сис­те­мати­чес­ких погрешностей яв­ляется испарение рас­тво­рителя при по­следовательном до­зи­рова­нии проб од­них и тех же образ­цов в хро­матограф. В резу­ль­тате площади пи­ков, оп­ределяемые после ввода стандартных добавок в образцы, ока­зываются не­ск­о­ль­ко за­вышенными, что и приводит к зани­же­нию результатов. Второй (менее зна­чи­мый) фактор – не­­зна­читель­ное уве­ли­чение объема образцов за счет добавок оп­ре­деляе­мых компо­нентов. Отмечено, что погрешности определений раз­личными вари­ан­тами способа стандартной добавки не превышают слу­чайных сос­та­в­ля­ю­щих по­гре­ш­­но­с­тей. Лучшие результаты (с учетом знаков отклонений) обеспечивает вы­чи­с­ле­ние соде­р­жа­­ния определяемого аналита методом двойной стандартной добавки с экстраполя­ци­ей результатов на «нулевую» вели­чину добавки. Для исключения влияния «человеческого фактора» (увеличение то­чности ре­зу­льтатов в ходе анализа серий однотипных образцов за счет опыта ана­литиков) все параллельные опреде­ле­ния были про­ве­дены студентами бакалав­ри­ата Института химии Санкт-Петер­бург­ского государ­ст­венного университета в ходе выполнения ими лабораторных работ. Такая орга­низация экспериментов повышает их дос­то­верность, поскольку исключает зависимость результатов от раз­личий в ква­ли­фи­ка­ции аналити­ков.Ключевые слова: Количественный хроматографический анализ, способ двойной стандартной добавки, различные варианты обработки результатов, особенности па­рал­­лель­ных определений.DOI: http://dx.doi.org/10.15826/analitika.2021.25.2.01