Evaluation of DNA Extraction Methods of Mule Dung

DNA isolation is a critical step in microbial community analysis of animal dung. DNA isolation from mule dung is challenging due to microbial diversity, composition and chemical nature of mule dung. Therefore, selection of an appropriate DNA isolation method is important to analyse the complete microbial diversity. In the current study, we evaluated the DNA isolation from mule dung samples (n=11) using QiAmp Mini stool kit as per manufacturer’s procedure with modifications. The results suggest that modifications in proprietary column based method improved the DNA quality and quantity suitable for mule dung microbial community analyses

Selenium levels in hospitalized preterm very low birth weight neonates in North India

Background: Most of the morbidity and mortality of very low birth weight (VLBW) neonates are due to oxidative stress and infection. Selenium can address these issues due to its antioxidant role and synthesis of glutathione peroxidase for scavenging free radicals. Objective: The objective of the study was to find the serum selenium levels in hospitalized preterm VLBW neonates. Materials and Methods: This was a prospective observational study conducted in the Neonatal Unit of Department of Paediatrics in a tertiary care hospital, Lucknow, for the duration of 1 year. A total of 126 preterm VLBW neonates admitted within 72 h of birth and having a venepuncture for any reason were enrolled, and those with major congenital abnormality, prior supplementation, and necrotizing enterocolitis on admission were excluded. Blood sample was collected after enrollment in plain vacutainer under aseptic precautions and after ½ h serum was separated by centrifugation. Selenium levels were estimated in serum by inductively coupled plasma optical emission spectrometry method (Perkin Elmer Optima 8000). Results: Mean birth weight was 1150±210 g and mean gestational age was 30.21±3.76 weeks in our study population. Mean levels of selenium were 9.49±3.49 μg/dl. Mean selenium levels in neonates with gestational age <30 weeks, 30–32, and >32 weeks were 8.90±3.32, 9.32±3.74, and 10.57±3.15 μg/dl (p=0.107), respectively. Thus, the selenium levels were seen increasing with an increase in the gestational age. Furthermore, serum selenium level of neonates with birth weight >1 kg (10.08±3.55 μg/dl) was found to be significantly higher than those with birth weight ≤1 kg (8.40±3.12 μg/dl) (p=0.009). No significant association was seen with birth centiles or gender. Conclusion: Serum selenium levels were significantly lower in preterm neonates with lesser gestational age and lower birth weight although the baseline levels were within normal limits. Thus, the significant difference in levels can be linked with most of the morbidities and mortality in preterm neonates

Applications of Personalised Phage Therapy highlighting the importance of Bacteriophage Banks against Emerging Antimicrobial Resistance

Emerging antibiotic resistance is one of the most important microbiological issues of the 21st century. This poses a query regarding the future use of antibiotics and availability of other promising therapeutic alternatives. The awareness about antibiotic misuse has improved insufficiently and is evident by the increased incidences of multidrug resistant infections globally. Amongst different antibacterial therapeutic approaches phage therapy has created a niche of its own due to continuous use for treatment of human infections in Eastern Europe. Synergistic compounds along with phages have also been proposed as a better alternative compared to antibiotics or phage alone for treatment of chronic cases and seriously debilitating diseases. As such, why not allow custom made phage therapy for treatment of chronic infections? However, the success of phage therapy will depend upon instant availability of characterised bacteriophages from bacteriophage banks which may serve as the major catalyst in bringing Phage Therapy to main stream treatment alternatives or in combination therapy at least. In the current article we present a glimpse of comprehensive approach about utility of bacteriophage banks and further present personalised phage therapy in a synergistic role with antibiotics to overcome emerging antimicrobial resistance

An open-label, multicenter, randomized, parallel, single-dose, comparative bioavailability study of two triamcinolone hexacetonide injectable suspensions in patients with knee osteoarthritis

Background: Triamcinolone hexacetonide (THA), a synthetic glucocorticoid with low solubility, can provide sustained pain relief and less systemic side effects in patients with knee osteoarthritis. This study aimed to characterize pharmacokinetic profile of THA-test product containing 20 mg/ml injectable suspension and compare its bioavailability with the standard reference in Indian patients with knee osteoarthritis. Methods: In this open-label, randomized, multicenter study, 44 adult patients were randomized (1:1; test n=23, reference n=21) to receive a single dose of test or reference products. The primary objective was to characterize the pharmacokinetic profile and compare bioavailability of both products via serum triamcinolone acetonide (TCA) concentration. Secondary objectives included safety and tolerability evaluation, impact on hypothalamic-pituitary-adrenal axis, and efficacy of test and reference products in reducing index knee pain. Results: Both products were absorbed with a median Tmax of 23.9 hours. Comparative bioavailability analysis demonstrated no statistically significant formulation effect for ln-transformed Cmax (1098.052 pg/ml for test, 1333.850 pg/ml for reference) and AUC0-t (159112.561 pg×h/ml for test, 211531.035 pg×h/ml for reference) for TCA. T/R ratio for Cmax was 82.3% and T/R ratio for AUC0-t was 75.2%, with >100% inter-subject variability for both Cmax and AUC0-t. Additionally, recovery time of cortisol levels of test and reference arms was 96 hours and 456 hours, respectively. Both products significantly reduced knee pain (p<0.0001). Conclusions: The test product provided lower systemic exposure and faster recovery of serum cortisol levels than the reference, while still providing similar beneficial effect in sustained index knee pain reduction

Streamlined and Cost-Effective Genomic DNA Extraction Method for Lichens, Mushrooms, and Endolichenic Fungi: Enabling DNA Barcoding and Molecular Research

Extraction of nucleic acids in pure form from organisms is of paramount importance for DNA based identification and other molecular studies. Over the past few decades, DNA-barcoding has emerged as a powerful technique, facilitating species identification across various ‘difficult to identify’ life-forms. Fungi, being an immensely diverse group of microorganisms, contribute significantly to global biodiversity, with estimates ranging from 2.2 to 3.8 million species. However, a vast majority of this diversity remains unidentified, and many fungal species are considered cryptic. Therefore, numerous large- and small-scale DNA-barcoding projects are being conducted worldwide to unravel this rich biodiversity. However, the rigidity and high complex polysaccharides content of fungal cell-wall presents a significant obstacle, making the extraction of high-quality genomic DNA a challenging task across varied fungal organisms. In this study, we employed a modified CTAB based method to isolate and purify high-quality PCR-amplifiable genomic DNA primarily from lichens and tested it on other fungal life forms as well, including, mushrooms, endolichenic fungi, and parasitic fungi. Remarkably, the isolated DNA proved successful as a template in PCR reactions, serving the purposes of DNA barcoding, RAPD as well as for metagenomic analysis effectively. This versatile protocol demonstrated its utility across all the fungal life forms investigated in this study, offering a universal, cost-effective, and efficient approach for fungal DNA isolation

YOGA PRACTICE AND BIOCHEMICAL AND PHYSIOLOGICAL ALTERATIONS IN NORMAL SUBJECTS

ABSTRACTObjective: To assess the effect of 45 minute yogic kriya (Surya Namaskar and Kapalbhati) for 30 days on various physiological and biochemicalparameters.Methods: About 20 Nursing College students of the Santosh Medical University, Ghaziabad, between the age group 17 and 21 years volunteered toparticipate in the study. They were divided into two Groups A and B. Group A students including 10 students in each group were subjected to 30 daysyoge kriya for 45 minutes for 6 days in a week. Statistical analysis: A student's t-test was used for comparing the means of pre- and post-yoga resultsof various parameters.Results: No significant difference was found in systolic blood pressure, pulse, body mass index, hemoglobin except for fasting blood sugar and diastolicblood pressure (p<0.001) among the yoga subject while comparing with baseline values and control.Keywords: Yoga, Biochemical alterations, Physiological alterations, Surya Namaskar and Kapal Bhati

Bioengineered bioreactors: a review on enhancing biomethane and biohydrogen production by CFD modeling

Computational fluid dynamics (CFD) is numerical strategy developed for simulating the behavior of liquid and gas flow. CFD may be applied starting from aerospace, engine design, vehicle aerodynamics, power plants and chemical industries for analyzing and solving relevant system design and process issues. Biogas produced during anaerobic digestion (AD) is sustainable and renewable alternative to fossil fuels. AD may improve the controlled production of biogas and offers significant environmental benefits. This review focuses on research outcomes relevant for enhanced biogas production by exploring the possible applications of CFD in AD technology. CFD-related research performed in AD conditions in order to improve mixing performance, reduce power consumption, and understand the effects of total solid (TS) concentrations on flow behavior have been discussed. In addition, the use of AD for bio-hydrogen production, wastewater treatment, and sludge treatment are looked in. This review also identifies novel areas for AD technology advancement where there is potential for economic improvement in renewable energy production. Finally, future research needs have been identified, focusing on the opportunities to integrate conceptual and mathematical models for advancing CFD simulations for bioenergy

Phase diagram of a strongly disordered s-wave superconductor, NbN, close to the metal-insulator transition

We present a phase diagram as a function of disorder in three-dimensional NbN thin films, as the system enters the critical disorder for the destruction of the superconducting state. The superconducting state is investigated using a combination of magnetotransport and tunneling spectroscopy measurements. Our studies reveal 3 different disorder regimes. At low disorder the (k_{F}l~10-4), the system follows the mean field Bardeen-Cooper-Schrieffer behavior where the superconducting energy gap vanishes at the temperature where electrical resistance appears. For stronger disorder (k_{F}l<4) a "pseudogap" state emerges where a gap in the electronic spectrum persists up to temperatures much higher than Tc, suggesting that Cooper pairs continue to exist in the system even after the zero resistance state is destroyed. Finally, very strongly disordered samples (k_{F}l<1) exhibit a pronounced magnetoresistance peak at low temperatures, suggesting that localized Cooper pairs continue to survive in the system even after the global superconducting ground state is completely destroyed.Comment: pdf file with figures (Modified Version

Phase diagram and upper critical field of homogenously disordered epitaxial 3-dimensional NbN films

We report the evolution of superconducting properties with disorder, in 3-dimensional homogeneously disordered epitaxial NbN thin films. The effective disorder in NbN is controlled from moderately clean limit down to Anderson metal-insulator transition by changing the deposition conditions. We propose a phase diagram for NbN in temperature-disorder plane. With increasing disorder we observe that as kFl-->1 the superconducting transition temperature (Tc) and minimum conductivity (sigma_0) go to zero. The phase diagram shows that in homogeneously disordered 3-D NbN films, the metal-insulator transition and the superconductor-insulator transition occur at a single quantum critical point at kFl~1.Comment: To appear in Journal of Superconductivity and Novel Magnetism (ICSM2010 proceedings

Bronchiectasis in India:results from the European Multicentre Bronchiectasis Audit and Research Collaboration (EMBARC) and Respiratory Research Network of India Registry

BACKGROUND: Bronchiectasis is a common but neglected chronic lung disease. Most epidemiological data are limited to cohorts from Europe and the USA, with few data from low-income and middle-income countries. We therefore aimed to describe the characteristics, severity of disease, microbiology, and treatment of patients with bronchiectasis in India. METHODS: The Indian bronchiectasis registry is a multicentre, prospective, observational cohort study. Adult patients ( 6518 years) with CT-confirmed bronchiectasis were enrolled from 31 centres across India. Patients with bronchiectasis due to cystic fibrosis or traction bronchiectasis associated with another respiratory disorder were excluded. Data were collected at baseline (recruitment) with follow-up visits taking place once per year. Comprehensive clinical data were collected through the European Multicentre Bronchiectasis Audit and Research Collaboration registry platform. Underlying aetiology of bronchiectasis, as well as treatment and risk factors for bronchiectasis were analysed in the Indian bronchiectasis registry. Comparisons of demographics were made with published European and US registries, and quality of care was benchmarked against the 2017 European Respiratory Society guidelines. FINDINGS: From June 1, 2015, to Sept 1, 2017, 2195 patients were enrolled. Marked differences were observed between India, Europe, and the USA. Patients in India were younger (median age 56 years [IQR 41-66] vs the European and US registries; p&lt;0\ub70001]) and more likely to be men (1249 [56\ub79%] of 2195). Previous tuberculosis (780 [35\ub75%] of 2195) was the most frequent underlying cause of bronchiectasis and Pseudomonas aeruginosa was the most common organism in sputum culture (301 [13\ub77%]) in India. Risk factors for exacerbations included being of the male sex (adjusted incidence rate ratio 1\ub717, 95% CI 1\ub703-1\ub732; p=0\ub7015), P aeruginosa infection (1\ub729, 1\ub710-1\ub750; p=0\ub7001), a history of pulmonary tuberculosis (1\ub720, 1\ub707-1\ub734; p=0\ub7002), modified Medical Research Council Dyspnoea score (1\ub732, 1\ub725-1\ub739; p&lt;0\ub70001), daily sputum production (1\ub716, 1\ub703-1\ub730; p=0\ub7013), and radiological severity of disease (1\ub703, 1\ub701-1\ub704; p&lt;0\ub70001). Low adherence to guideline-recommended care was observed; only 388 patients were tested for allergic bronchopulmonary aspergillosis and 82 patients had been tested for immunoglobulins. INTERPRETATION: Patients with bronchiectasis in India have more severe disease and have distinct characteristics from those reported in other countries. This study provides a benchmark to improve quality of care for patients with bronchiectasis in India. FUNDING: EU/European Federation of Pharmaceutical Industries and Associations Innovative Medicines Initiative inhaled Antibiotics in Bronchiectasis and Cystic Fibrosis Consortium, European Respiratory Society, and the British Lung Foundation