Genetic variation of durum wheat landraces using morphological and protein markers

Genetic variations of cultivars are very interesting in reducing genetic vulnerability and lead to stable control of production. The aim of this research was to study genetic diversity among six durum wheat cultivars. For the first assay we evaluated seven morphological traits which are: spikelet per spike, spike length, spike width, beard length, plant height, width of truncation and barb length. The tested genotypes were classified in three groups according to the linkage distance analysis. The genetic variability was also evaluated for seed storage-proteins by sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE). Electrophoregram allowed the estimation of the durum wheat genetic similarity (GS). This GS analysis based on Unweighted Pair Group Method with Arithmetic averages (UPGMA), permits to obtain the same genotypic clustering. No significant correlation was observed among the two methods tested. It is concluded that seed storage protein profiles could be useful markers in the studies of genetic diversity and genotypes classification, which can be used to improve the efficiency of wheat breeding programs.Key words: Wheat genotypes, SDS-PAGE, genetic diversity, cluster analysis

Allelopathic and autotoxicity effects of barley (Hordeum vulgare L. ssp. vulgare) root exudates

The allelopathic activity of barley (Hordeum vulgare L. ssp. vulgare) root exudates was studied by comparing their effects on seedling establishment in barley itself and in two weed species, Bromus diandrus Roth. and Lolium rigidum Gaudin, using an original laboratory protocol, named ‘seed-after-seed’. In this protocol, the donor and the receiver species of watersoluble allelochemicals are grown one after the other in the same dishes, in conditions reducing resource competition between both species. Growth of all receptive species (weeds and barley) was inhibited in a dose-dependent manner, when using increasing barley seed densities (0, 8, 19 and 25 seeds per Petri dish). In our conditions, the barley varieties and landraces exhibited different allelopathic activities against weeds or barley. The allelopathic potential of the barley root exudates was also dependent on the receiver species. Indeed, the released allelochemicals proved to be more toxic against the weed plants than on barley itself. Furthermore, the toxicity of the allelochemicals increased after their release by roots, between day 0 and day 6. These allelochemicals might contribute to the plant community dynamics and their usefulness as bio-herbicides deserves further consideration

Physiological and biochemical parameters: new tools to screen barley root exudates allelopathic potential (*Hordeum vulgare* L. subsp. *vulgare*

peer reviewedMorphological markers/traits are often used in the detection of allelopathic stress, but optical signals including chlorophyll a fluorescence emission could be useful in developing new screening techniques. In this context, the allelopathic effect of barley (Hordeum vulgare subsp. vulgare) root exudates (three modern varieties and three landraces) were assessed on the morphological (root and shoot length, biomass accumulation), physiological (Fv/Fm and F0), and biochemical (chlorophyll and protein contents) variables of great brome (Bromus diandrus Roth., syn. Bromus rigidus Roth. subsp. gussonii Parl.). All the measured traits were affected when great brome was grown in a soil substrate in which barley plants had previously developed for 30 days before being removed. The response of receiver plants was affected by treatment with activated charcoal, dependent on barley genotype and on the nature of the growing substrate. The inhibitory effect was lower with the addition of the activated charcoal suggesting the release of putative allelochemicals from barley roots into the soil. The barley landraces were more toxic than modern varieties and their effect was more pronounced in sandy substrate than in silty clay sand substrate. In our investigation, the chlorophyll content and Fv/Fm were the most correlated variables with barley allelopathic potential. These two parameters might be considered as effective tools to quantify susceptibility to allelochemical inhibitors in higher plants

Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19

BackgroundWe previously reported that impaired type I IFN activity, due to inborn errors of TLR3- and TLR7-dependent type I interferon (IFN) immunity or to autoantibodies against type I IFN, account for 15-20% of cases of life-threatening COVID-19 in unvaccinated patients. Therefore, the determinants of life-threatening COVID-19 remain to be identified in similar to 80% of cases.MethodsWe report here a genome-wide rare variant burden association analysis in 3269 unvaccinated patients with life-threatening COVID-19, and 1373 unvaccinated SARS-CoV-2-infected individuals without pneumonia. Among the 928 patients tested for autoantibodies against type I IFN, a quarter (234) were positive and were excluded.ResultsNo gene reached genome-wide significance. Under a recessive model, the most significant gene with at-risk variants was TLR7, with an OR of 27.68 (95%CI 1.5-528.7, P=1.1x10(-4)) for biochemically loss-of-function (bLOF) variants. We replicated the enrichment in rare predicted LOF (pLOF) variants at 13 influenza susceptibility loci involved in TLR3-dependent type I IFN immunity (OR=3.70[95%CI 1.3-8.2], P=2.1x10(-4)). This enrichment was further strengthened by (1) adding the recently reported TYK2 and TLR7 COVID-19 loci, particularly under a recessive model (OR=19.65[95%CI 2.1-2635.4], P=3.4x10(-3)), and (2) considering as pLOF branchpoint variants with potentially strong impacts on splicing among the 15 loci (OR=4.40[9%CI 2.3-8.4], P=7.7x10(-8)). Finally, the patients with pLOF/bLOF variants at these 15 loci were significantly younger (mean age [SD]=43.3 [20.3] years) than the other patients (56.0 [17.3] years; P=1.68x10(-5)).ConclusionsRare variants of TLR3- and TLR7-dependent type I IFN immunity genes can underlie life-threatening COVID-19, particularly with recessive inheritance, in patients under 60 years old