Alfred H. Holden to Doctor Silver, 12 October 1960

Professional correspondenc

Selecting and preparing seed corn.

The following circular has been prepared in answer to the many letters which are being received daily asking for information regarding the purchasing and testing of seed corn and its preparation for planting. When we consider that more than nine million acres, considerably over one-fourth of the entire area of the state, will be planted to corn the coming season and that it will require more than 1,300,000 bushels of seed to plant this area; and when we realize that the character of the seed, its vitality, breeding, purity, adaptability to the soil and climate and uniformity in both size and shape of kernels, all exercise a great influence on the future yield, the great importance of paying the closest attention to the testing and the preparation of the seed corn for the planter cannot be over estimated

Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines

Funding: This work was funded by the Newton Fund, Medical Research Council (UK) grant MR/N019296/1, Philippine Council for Health Research and Development project number FP160007. J.S. was partially supported by research grants RR025040 and U01CA207167 from the National Institutes of Health (NIH). S.A. and D.M.A. were additionally supported by the National Institute for Health Research (UK) Global Health Research Unit on genomic Surveillance of AMR(16_136_111) and by the Centre for Genomic Pathogen Surveillance (http://pathogensurveillance.net).National networks of laboratory-based surveillance of antimicrobial resistance (AMR) monitor resistance trends and disseminate these data to AMR stakeholders. Whole-genome sequencing (WGS) can support surveillance by pinpointing resistance mechanisms and uncovering transmission patterns. However, genomic surveillance is rare in low- and middle-income countries. Here, we implement WGS within the established Antimicrobial Resistance Surveillance Program of the Philippines via a binational collaboration. In parallel, we characterize bacterial populations of key bug-drug combinations via a retrospective sequencing survey. By linking the resistance phenotypes to genomic data, we reveal the interplay of genetic lineages (strains), AMR mechanisms, and AMR vehicles underlying the expansion of specific resistance phenotypes that coincide with the growing carbapenem resistance rates observed since 2010. Our results enhance our understanding of the drivers of carbapenem resistance in the Philippines, while also serving as the genetic background to contextualize ongoing local prospective surveillance.Publisher PDFPeer reviewe

Baseline Gastrointestinal Eosinophilia Is Common in Oral Immunotherapy Subjects With IgE-Mediated Peanut Allergy

Rationale: Oral immunotherapy (OIT) is an emerging treatment for food allergy. While desensitization is achieved in most subjects, many experience gastrointestinal symptoms and few develop eosinophilic gastrointestinal disease. It is unclear whether these subjects have subclinical gastrointestinal eosinophilia (GE) at baseline. We aimed to evaluate the presence of GE in subjects with food allergy before peanut OIT.Methods: We performed baseline esophagogastroduodenoscopies on 21 adults before undergoing peanut OIT. Subjects completed a detailed gastrointestinal symptom questionnaire. Endoscopic findings were assessed using the Eosinophilic Esophagitis (EoE) Endoscopic Reference Score (EREFS) and biopsies were obtained from the esophagus, gastric antrum, and duodenum. Esophageal biopsies were evaluated using the EoE Histologic Scoring System. Immunohistochemical staining for eosinophil peroxidase (EPX) was also performed. Hematoxylin and eosin and EPX stains of each biopsy were assessed for eosinophil density and EPX/mm2 was quantified using automated image analysis.Results: All subjects were asymptomatic. Pre-existing esophageal eosinophilia (>5 eosinophils per high-power field [eos/hpf]) was present in five participants (24%), three (14%) of whom had >15 eos/hpf associated with mild endoscopic findings (edema, linear furrowing, or rings; median EREFS = 0, IQR 0–0.25). Some subjects also demonstrated basal cell hyperplasia, dilated intercellular spaces, and lamina propria fibrosis. Increased eosinophils were noted in the gastric antrum (>12 eos/hpf) or duodenum (>26 eos/hpf) in 9 subjects (43%). EPX/mm2 correlated strongly with eosinophil counts (r = 0.71, p < 0.0001).Conclusions: Pre-existing GE is common in adults with IgE-mediated peanut allergy. Eosinophilic inflammation (EI) in these subjects may be accompanied by mild endoscopic and histologic findings. Longitudinal data collection during OIT is ongoing

Contributions in honor of Guy G. Musser.

450 p. : ill. (some col.), maps ; 26 cm. "Issued December 15, 2009." Includes bibliographical references.Contents: They sort out like nuts and bolts : a scientific biography of Guy G. Musser / Michael D. Carleton -- Taxonomy, distribution, and natural history of the genus Heteromys ‪(‬Rodentia: Heteromyidae‪)‬ in central and eastern Venezuela, with the description of a new species from the Cordillera de la Costa / Robert P. Anderson and Eliécer E. Gutiérrez -- Review of the Oryzomys couesi complex ‪(‬Rodentia: Cricetidae: Sigmodontinae‪)‬ in western Mexico / Michael D. Carleton and Joaquin Arroyo-Cabrales -- The antiquity of Rhizomys and independent acquisition of fossorial traits in subterranean muroids / Lawrence J. Flynn -- A new species of Reithrodontomys, subgenus Aporodon ‪(‬Cricetidae: Neotominae‪)‬, from the highlands of Costa Rica, with comments on Costa Rican and Panamanian Reithrodontomys / Alfred L. Gardner and Michael D. Carleton -- Phylogenetic relationships of harpyionycterine megabats ‪(‬Chiroptera: Pteropodidae‪)‬ / Norberto P. Giannini, Francisca Cunha Almeida, and Nancy B. Simmons -- A new genus and species of small ‪"‬tree-mouse‪"‬ ‪(‬Rodentia, Muridae‪)‬ related to the Philippine giant cloud rats / Lawrence R. Heaney, Danilo S. Balete, Eric A. Rickart, M. Josefa Veluz, and Sharon A. Jansa -- Biodiversity and biogeography of the moss-mice of New Guinea : a taxonomic revision of Pseudohydromys ‪(‬Muridae: Murinae‪)‬ / Kristofer M. Helgen and Lauren E. Helgen -- Systematic revision of sub-Saharan African dormice ‪(‬Rodentia: Gliridae‪)‬. Part 2, Description of a new species of Graphiurus from the central Congo Basin, including morphological and ecological niche comparisons with G. crassicaudatus and G. lorraineus / Mary Ellen Holden and Rebecca S. Levine -- Descriptions of new species of Crocidura ‪(‬Soricomorpha: Soricidae‪)‬ from mainland Southeast Asia, with synopses of previously described species and remarks on biogeography / Paulina D. Jenkins, Darrin P. Lunde, and Clive B. Moncrieff -- The six opossums of Félix de Azara : identification, taxonomic history, neotype designations, and nomenclatural recommendations / Robert S. Voss, Philip Myers, François Catzeflis, Ana Paula Carmignotto, and Josefina Barreiro -- Skull and dentition of Willeumys korthi, nov. gen. et sp., a cricetid rodent from the Oligocene ‪(‬Orellan‪)‬ of Wyoming / John H. Wahlert

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead