Reassembling gastrulation

During development, a single cell is transformed into a highly complex organism through progressive cell division, specification and rearrangement. An important prerequisite for the emergence of patterns within the developing organism is to establish asymmetries at various scales, ranging from individual cells to the entire embryo, eventually giving rise to the different body structures. This becomes especially apparent during gastrulation, when the earliest major lineage restriction events lead to the formation of the different germ layers. Traditionally, the unfolding of the developmental program from symmetry breaking to germ layer formation has been studied by dissecting the contributions of different signaling pathways and cellular rearrangements in the in vivo context of intact embryos. Recent efforts, using the intrinsic capacity of embryonic stem cells to self-assemble and generate embryo-like structures de novo, have opened new avenues for understanding the many ways by which an embryo can be built and the influence of extrinsic factors therein. Here, we discuss and compare divergent and conserved strategies leading to germ layer formation in embryos as compared to in vitro systems, their upstream molecular cascades and the role of extrinsic factors in this process

Vom "missglückten Mann" zur sozialen Konstruktion: Rezension zu "Philosophische Geschlechtertheorien zur Einführung" von Friederike Kuster

Friederike Kuster: Philosophische Geschlechtertheorien zur Einführung. Hamburg: Junius 2019. 978-3-96060-305-

Der Nationalsozialismus, »ein metaphysisches Geheimnis«?

Bereits 1946 schrieb Max Horkheimer aus dem amerikanischen Exil an seinen in Deutschland verbliebenen Schüler Heinz Maus, dass er die »Ausbildung einer zeitgemässen Soziologie des Terrors« als »eine der wichtigsten und spezifisch deutschen Aufgaben« ansehe. Dieser Aufgabe ist die Soziologie bis heute nicht nachgekommen. Der Beitrag setzt an dieser Leerstelle an. Er versteht sich als eine Spurensuche, durch die Antworten auf die Frage gefunden werden sollen, warum sich ausgerechnet die Soziologie so wenig mit diesem Phänomen befasst. Der Weg, den diese Spurensuche einschlägt, ist ein Umweg. Anstatt sich unmittelbar mit der Gegenwart zu beschäftigen, fokussiert er das schwierige Verhältnis der Soziologie zum Nationalsozialismus und fragt, ob sich aus diesem etwas über die aktuelle Vernachlässigung des Rechtsterrorismus lernen lässt

Die DGS und der Nationalsozialismus

Ausgehend von einer kurzen Reflexion der Soziologie zum Ende der Weimarer Republik beschäftigt sich der Beitrag sowohl mit der Geschichte der DGS im Nationalsozialismus als auch mit der parallelen inhaltlichen Entwicklung der Soziologie nach 1933. Im Fokus der Aufmerksamkeit liegen die Umstände der Stilllegung der DGS und das für die Stilllegung bedeutsame nationalsozialistische Jenaer Soziologentreffen von 1934.   Based on short reflections on the sociological state of the art at the end of the Republic of Weimar the article deals with the history of the DGS during National Socialism as well as with the development of the sociological profession after 1933. The main focus is on the circumstances of the closedown of the DGS and on the meeting of sociologists in 1934 in Jena, which – highly influenced by National Socialism – played an important role for the closure of the DGS

Zebrafish embryonic explants undergo genetically encoded self-assembly

Embryonic stem cell cultures are thought to self-organize into embryoid bodies, able to undergo symmetry-breaking, germ layer specification and even morphogenesis. Yet, it is unclear how to reconcile this remarkable self-organization capacity with classical experiments demonstrating key roles for extrinsic biases by maternal factors and/or extraembryonic tissues in embryogenesis. Here, we show that zebrafish embryonic tissue explants, prepared prior to germ layer induction and lacking extraembryonic tissues, can specify all germ layers and form a seemingly complete mesendoderm anlage. Importantly, explant organization requires polarized inheritance of maternal factors from dorsal-marginal regions of the blastoderm. Moreover, induction of endoderm and head-mesoderm, which require peak Nodal-signaling levels, is highly variable in explants, reminiscent of embryos with reduced Nodal signals from the extraembryonic tissues. Together, these data suggest that zebrafish explants do not undergo bona fide self-organization, but rather display features of genetically encoded self-assembly, where intrinsic genetic programs control the emergence of order

Neither dust nor black carbon causing apparent albedo decline in Greenland\u27s dry snow zone: Implications for MODIS C5 surface reflectance

Remote sensing observations suggest Greenland ice sheet (GrIS) albedo has declined since 2001, even in the dry snow zone. We seek to explain the apparent dry snow albedo decline. We analyze samples representing 2012–2014 snowfall across NW Greenland for black carbon and dust light-absorbing impurities (LAI) and model their impacts on snow albedo. Albedo reductions due to LAI are small, averaging 0.003, with episodic enhancements resulting in reductions of 0.01–0.02. No significant increase in black carbon or dust concentrations relative to recent decades is found. Enhanced deposition of LAI is not, therefore, causing significant dry snow albedo reduction or driving melt events. Analysis of Collection 5 Moderate Resolution Imaging Spectroradiometer (MODIS) surface reflectance data indicates that the decline and spectral shift in dry snow albedo contains important contributions from uncorrected Terra sensor degradation. Though discrepancies are mostly below the stated accuracy of MODIS products, they will require revisiting some prior conclusions with C6 data

Mechanosensation of tight junctions depends on ZO-1 phase separation and flow

Cell-cell junctions respond to mechanical forces by changing their organization and function. To gain insight into the mechanochemical basis underlying junction mechanosensitivity, we analyzed tight junction (TJ) formation between the enveloping cell layer (EVL) and the yolk syncytial layer (YSL) in the gastrulating zebrafish embryo. We found that the accumulation of Zonula Occludens-1 (ZO-1) at TJs closely scales with tension of the adjacent actomyosin network, revealing that these junctions are mechanosensitive. Actomyosin tension triggers ZO-1 junctional accumulation by driving retrograde actomyosin flow within the YSL, which transports non-junctional ZO-1 clusters toward the TJ. Non-junctional ZO-1 clusters form by phase separation, and direct actin binding of ZO-1 is required for stable incorporation of retrogradely flowing ZO-1 clusters into TJs. If the formation and/or junctional incorporation of ZO-1 clusters is impaired, then TJs lose their mechanosensitivity, and consequently, EVL-YSL movement is delayed. Thus, phase separation and flow of non-junctional ZO-1 confer mechanosensitivity to TJs

A multi-stage machine learning model on diagnosis of esophageal manometry

High-resolution manometry (HRM) is the primary procedure used to diagnose esophageal motility disorders. Its interpretation and classification includes an initial evaluation of swallow-level outcomes and then derivation of a study-level diagnosis based on Chicago Classification (CC), using a tree-like algorithm. This diagnostic approach on motility disordered using HRM was mirrored using a multi-stage modeling framework developed using a combination of various machine learning approaches. Specifically, the framework includes deep-learning models at the swallow-level stage and feature-based machine learning models at the study-level stage. In the swallow-level stage, three models based on convolutional neural networks (CNNs) were developed to predict swallow type, swallow pressurization, and integrated relaxation pressure (IRP). At the study-level stage, model selection from families of the expert-knowledge-based rule models, xgboost models and artificial neural network(ANN) models were conducted, with the latter two model designed and augmented with motivation from the export knowledge. A simple model-agnostic strategy of model balancing motivated by Bayesian principles was utilized, which gave rise to model averaging weighted by precision scores. The averaged (blended) models and individual models were compared and evaluated, of which the best performance on test dataset is 0.81 in top-1 prediction, 0.92 in top-2 predictions. This is the first artificial-intelligence-style model to automatically predict CC diagnosis of HRM study from raw multi-swallow data. Moreover, the proposed modeling framework could be easily extended to multi-modal tasks, such as diagnosis of esophageal patients based on clinical data from both HRM and functional luminal imaging probe panometry (FLIP)

Evolutionary conservation of the eumetazoan gene regulatory landscape

Despite considerable differences in morphology and complexity of body plans among animals, a great part of the gene set is shared among Bilateria and their basally branching sister group, the Cnidaria. This suggests that the common ancestor of eumetazoans already had a highly complex gene repertoire. At present it is therefore unclear how morphological diversification is encoded in the genome. Here we address the possibility that differences in gene regulation could contribute to the large morphological divergence between cnidarians and bilaterians. To this end, we generated the first genome-wide map of gene regulatory elements in a nonbilaterian animal, the sea anemone Nematostella vectensis. Using chromatin immunoprecipitation followed by deep sequencing of five chromatin modifications and a transcriptional cofactor, we identified over 5000 enhancers in the Nematostella genome and could validate 75% of the tested enhancers in vivo. We found that in Nematostella, but not in yeast, enhancers are characterized by the same combination of histone modifications as in bilaterians, and these enhancers preferentially target developmental regulatory genes. Surprisingly, the distribution and abundance of gene regulatory elements relative to these genes are shared between Nematostella and bilaterian model organisms. Our results suggest that complex gene regulation originated at least 600 million yr ago, predating the common ancestor of eumetazoans