Freshwater mussels as a tool for reconstructing climate history

© 2018 Elsevier Ltd Sclerochronology provides an important and widely used tool to examine annual environmental patterns in marine systems, but few similar tools have been developed to establish ecological indicators in freshwaters on a seasonal scale. Previous work using marine mussels as ecological indicators have practiced shell ashing, acetate peels, and thin sectioning, all of which destroy the specimens. We studied the external annual rings of three freshwater mussel species with clear annual bands from the River Medway, UK, in order to non-invasively investigate the relationship between banding patterns, growth parameters, location, and seasonal water temperatures. We tested the accuracy and precision of this method through repetition of measurements and the reproduction of results through separate agers. Overall, mussels living downstream had higher length-at-age curves, asymptotic lengths (L∞), and growth constants (k) than those living upstream. In Unio pictorum and Unio tumidus, there was a negative relationship between asymptotic lengths and growth constants, indicating that larger asymptotic lengths took more time to reach. Unio tumidus had the highest asymptotic lengths and the lowest growth constants across sites while Unio pictorum had the lowest asymptotic lengths and the highest growth constants across sites. Anodonta anatina showed simultaneously increasing asymptotic lengths with increasing growth constants and had the highest overall lengths of all three species. Summer water temperatures had the largest positive effect on annual growth, followed by spring and winter water temperatures, while autumnal temperatures had a negative impact on growth. The findings of this study suggest that through their annual banding, freshwater mussels can be used as tools to document historical water temperatures, especially in the warmer months of spring and summer, and can therefore serve as powerful indicators of spatial and temporal patterns in water temperature. Such tools can help infer palaeoclimatic conditions from fossil and subfossil shells, establish baselines for understanding future climatic change, and support conservation efforts aimed at protecting temperature-sensitive taxa

The impacts of habitat disturbance on adult and larval dragonflies (Odonata) in rainforest streams in Sabah, Malaysian Borneo

$\textbf{1.}$ Dragonfly assemblages (Odonata: comprising damselflies, Zygoptera; and dragonflies, Anisoptera) in Southeast Asian rainforests are extremely diverse but increasingly threatened by habitat disturbance, including logging and conversion of forest to oil palm plantations. $\textbf{2.}$ Land-use change can affect dragonfly larval stages by altering within-stream environmental conditions, and adults by loss of perches, shade and hunting habitat. However, the extent to which dragonflies are affected by land-use change is not well known, and strategies for conservation are poorly developed. $\textbf{3.}$ We surveyed dragonfly adults and larvae, forest quality and stream environmental conditions across 16 streams in Sabah, Malaysia. Habitat surrounding the streams included pristine forest, selectively logged forest, oil palm with forested riparian buffer strips and oil palm without buffers. $\textbf{4.}$ Overall abundance and species richness of adult dragonflies stayed constant with habitat disturbance, but larval abundance and richness decreased with higher habitat disturbance, and larvae were largely absent from oil palm streams. There was also a clear shift in community composition of both adult and larval dragonflies. Anisoptera adults were more species rich and abundant, but Zygoptera adults were less species rich in more disturbed sites. $\textbf{5.}$ The presence of riparian buffers in oil palm plantations offered some protection for forest-associated dragonfly species, and streams with wider riparian buffers supported adult assemblages more similar to those found in logged forest. However, oil palm streams with riparian buffers still contained a depauperate larval assemblage compared to logged forest areas, and dragonfly assemblages in narrow riparian buffer streams were similar to those found in streams surrounded by continuous oil palm. $\textbf{6.}$ Our results provide clear evidence of the effect of land-use change on dragonflies. Conservation efforts to conserve forest communities should target the preservation of existing forest areas, but management within oil palm plantation landscapes to preserve riparian buffers can still have a marked beneficial effect on dragonfly communities.SHL was funded by a Natural Environment Research Council (NERC) studentship (1122589), Proforest, the Varley Gradwell Travelling Fellowship, Tim Whitmore Fund, Panton Trust and the Cambridge University Commonwealth Fund during this work. We have no conflicts of interest to declare

Population-level effects of parasitism on a freshwater ecosystem engineer, the unionid mussel Anodonta anatina

Funder: Woolf Fisher TrustAbstract: Parasites can negatively affect hosts at individual, population, and species‐level scales. However, the link between individual‐ and population‐level impacts is often poorly understood. In particular, the population‐level response to parasitism may alter wider ecosystem dynamics if animals with ecosystem engineering capabilities are infected. Here, we examine the effects of parasitism on a freshwater ecosystem engineer, the unionid mussel Anodonta anatina, at two different sites. We study three common parasites: the digenean trematode Rhipidocotyle campanula; the unionicolid mite Unionicola intermedia; and the ectoparasitic invasive zebra mussel Dreissena polymorpha. As well as demonstrating the individual‐level effects of parasitism on the native host mussel, we construct a simple model to estimate the reduction in population‐level reproductive output caused by parasites. We show that both infection prevalence and intensity were population‐specific, with one site having more than three times as many native mussels infected by trematodes and mites than the other, but more than four times fewer mussels afflicted by invasive zebra mussels. Negative reproductive consequences for individual host mussels were documented as a result of parasitism, with trematodes causing castration at both sites. Mites were also correlated with a reduction in the viability of larval offspring (glochidia) by more than 25%, but only at one site, suggesting some potential impacts of parasitism may be population specific. The population‐level model shows that parasitism alone reduces larval output of the two populations by 10% and 13%, respectively. Our study takes the important step of scaling individual‐level effects of parasitism to population‐level processes, and highlights the influence that parasites may have in the population dynamics of unionid mussels. Given the ecosystem engineering capabilities of A. anatina, such effects may have important impacts on the wider biota. Even at relatively low prevalences, the observed effects of parasites on native mussel populations suggests that parasitism must be considered in the conservation of freshwater mussels, one of the world's most globally imperilled faunal groups. Further, understanding how the effects of parasitism on individual hosts scales to the ecosystem level is a crucial and unaddressed question in freshwater biology

Recreational angling as a pathway for invasive non-native species spread: awareness of biosecurity and the risk of long distance movement into Great Britain

AbstractIdentifying and establishing the relative importance of different anthropogenic pathways of invasive non-native species (INNS) introduction is critical for effective management of their establishment and spread in the long-term. Angling has been identified as one of these pathways. An online survey of 680 British anglers was conducted to establish patterns of movement by British anglers abroad, and to establish their awareness and use of biosecurity practices. The survey revealed that 44% of British anglers travelled abroad for fishing, visiting 72 different countries. France was the most frequently visited country, accounting for one-third of all trips abroad. The estimated time taken to travel from Western Europe into Great Britain (GB) is within the time frame that INNS have been shown to survive on damp angling equipment. Without biosecurity, it is therefore highly likely that INNS could be unintentionally transported into GB on damp angling gear. Since the launch of the Check, Clean Dry biosecurity campaign in GB in 2011, the number of anglers cleaning their equipment after every trip has increased by 15%, and 80% of anglers now undertake some form of biosecurity. However, a significant proportion of the angling population is still not implementing sufficient, or the correct biosecurity measures to minimize the risk of INNS dispersal on damp angling equipment. With the increase in movement of anglers abroad for fishing, further work is required to establish the potential for INNS introduction through this pathway.</jats:p

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo

Freshwaters provide valuable habitat and important ecosystem services, but are threatened worldwide by habitat loss and degradation. In Southeast Asia, rainforest streams are particularly threatened by logging and conversion to oil palm, but we lack information on the impacts of this on freshwater environmental conditions, and the relative importance of catchment versus riparian-scale disturbance. We studied sixteen streams in Sabah, Borneo, including old growth forest, logged forest, and oil palm sites. We assessed forest quality in riparian zones and across the whole catchment, and compared it with stream environmental conditions including water quality, structural complexity and organic inputs. We found that streams with the highest riparian forest quality were nearly 4 °C cooler, over 20 cm deeper, had over 40% less sand, greater canopy cover, more stored leaf litter and wider channels than oil palm streams with the lowest riparian forest quality. Other variables were significantly related to catchment-scale forest quality, with streams in the highest quality forest catchments having 40% more bedrock and 20 times more dead wood, along with higher phosphorus, and lower nitrate-N levels compared to streams with the lowest catchment-scale forest quality. Although riparian buffer strips went some way to protecting waterways, they did not maintain fully forest-like stream conditions. In addition, logged forest streams still showed signs of disturbance 10-15 years after selective logging. Our results suggest that maintenance and restoration of buffer strips can help to protect healthy freshwater ecosystems, but logging practices and catchment-scale forest management also need to be considered.During this work SHL was funded by a Natural Environment Research Council (NERC) studentship (number 1122589), Proforest, the Varley Gradwell Travelling Fellowship, Tim Whitmore Fund, Panton Trust and the Cambridge University Commonwealth Fund. MP and RME were supported by European Research Council Project number 281986. HB was funded by the S.T. Lee Fund

Changes in pathways and vectors of biological invasions in Northwest Europe

We assessed how establishment patterns of non-native freshwater, marine and terrestrial species into Northwest Europe (using Great Britain, France, Belgium and the Netherlands as the study countries) have changed over time, and identified the prevalent pathways and vectors of recent arrivals. Data were extracted from 33 sources on (a) presence/absence and (b) first year of observation in the wild in each country, and (c) continent(s) of origin, (d) invasion pathway(s), (e) invasion vector(s) and (f) environment(s) for 359 species, comprising all non-native Mollusca, Osteichthyes (bony fish), Anseriformes (wildfowl) and Mammalia, and non-native invasive Angiospermae present in the area. Molluscs, fish and wildfowl, particularly those originating from South America, arrived more recently into Northwest Europe than other groups, particularly mammals, invasive plants and species originating from North America. Non-deliberate introductions, those of aquatic species and those from elsewhere in Europe and/or Asia increased strongly in importance after the year 2000 and were responsible for 69, 83 and 89 % of new introductions between 2001 and 2015, respectively. Non-deliberate introductions and those from Asia and North America contributed significantly more to introductions of invasive species in comparison to other non-native species. From the 1960s, ornamental trade has increased in importance relative to other vectors and was responsible for all deliberate introductions of study groups since 2001. Non-deliberate introductions of freshwater and marine species originating from Southeast Europe and Asia represent an increasingly important ecological and economic threat to Northwest Europe. Invertebrates such as molluscs may be particularly dangerous due to their small size and difficulties in detection. Prevention of future invasions in this respect will require intensive screening of stowaways on boats and raising of public awareness.Research leading to this study was funded by the European Regional Development Fund through the EU co-funded Interreg 2Seas project RINSE (reducing the impact of non-native species in Europe; www.rinse-europe.eu), which seeks to improve awareness of the threats posed by INNS, and the methods to address them. AZ and BG received financial support from RINSE. AZ is supported by a Postdoctoral Research Fellowship of the University of Nottingham, Malaysia Campus. BG holds a Postdoctoral Research Fellowship from the Spanish Ministry of Economy and Competitiveness (JCI-2012-11908)

Landmarking the brain for geometric morphometric analysis: An error study

Neuroanatomic phenotypes are often assessed using volumetric analysis. Although powerful and versatile, this approach is limited in that it is unable to quantify changes in shape, to describe how regions are interrelated, or to determine whether changes in size are global or local. Statistical shape analysis using coordinate data from biologically relevant landmarks is the preferred method for testing these aspects of phenotype. To date, approximately fifty landmarks have been used to study brain shape. Of the studies that have used landmark-based statistical shape analysis of the brain, most have not published protocols for landmark identification or the results of reliability studies on these landmarks. The primary aims of this study were two-fold: (1) to collaboratively develop detailed data collection protocols for a set of brain landmarks, and (2) to complete an intra- and inter-observer validation study of the set of landmarks. Detailed protocols were developed for 29 cortical and subcortical landmarks using a sample of 10 boys aged 12 years old. Average intra-observer error for the final set of landmarks was 1.9 mm with a range of 0.72 mm-5.6 mm. Average inter-observer error was 1.1 mm with a range of 0.40 mm-3.4 mm. This study successfully establishes landmark protocols with a minimal level of error that can be used by other researchers in the assessment of neuroanatomic phenotypes. © 2014 Chollet et al

Four priority areas to advance invasion science in the face of rapid environmental change

Unprecedented rates of introduction and spread of non-native species pose burgeoning challenges to biodiversity, natural resource management, regional economies, and human health. Current biosecurity efforts are failing to keep pace with globalization, revealing critical gaps in our understanding and response to invasions. Here, we identify four priority areas to advance invasion science in the face of rapid global environmental change. First, invasion science should strive to develop a more comprehensive framework for predicting how the behavior, abundance, and interspecific interactions of non-native species vary in relation to conditions in receiving environments and how these factors govern the ecological impacts of invasion. A second priority is to understand the potential synergistic effects of multiple co-occurring stressors— particularly involving climate change—on the establishment and impact of non-native species. Climate adaptation and mitigation strategies will need to consider the possible consequences of promoting non-native species, and appropriate management responses to non-native species will need to be developed. The third priority is to address the taxonomic impediment. The ability to detect and evaluate invasion risks is compromised by a growing deficit in taxonomic expertise, which cannot be adequately compensated by new molecular technologies alone. Management of biosecurity risks will become increasingly challenging unless academia, industry, and governments train and employ new personnel in taxonomy and systematics. Fourth, we recommend that internationally cooperative biosecurity strategies consider the bridgehead effects of global dispersal networks, in which organisms tend to invade new regions from locations where they have already established. Cooperation among countries to eradicate or control species established in bridgehead regions should yield greater benefit than independent attempts by individual countries to exclude these species from arriving and establishing

Subclonal TP53 copy number is associated with prognosis in multiple myeloma

Multiple myeloma (MM) is a genetically heterogeneous cancer of bone marrow plasma cells with variable outcome. To assess the prognostic relevance of clonal heterogeneity of TP53 copy number, we profiled tumors from 1777 newly diagnosed Myeloma XI trial patients with multiplex ligation-dependent probe amplification (MLPA). Subclonal TP53 deletions were independently associated with shorter overall survival, with a hazard ratio of 1.8 (95% confidence interval, 1.2-2.8; P = .01). Clonal, but not subclonal, TP53 deletions were associated with clinical markers of advanced disease, specifically lower platelet counts (P < .001) and increased lactate dehydrogenase (P < .001), as well as a higher frequency of features indicative of genomic instability, del(13q) (P = .002) or del(1p) (P = .006). Biallelic TP53 loss-of-function by mutation and deletion was rare (2.4%) and associated with advanced disease. We present a framework for identifying subclonal TP53 deletions by MLPA, to improve patient stratification in MM and tailor therapy, enabling management strategies