Functional and structural characterization of an endo-β-1,3-glucanase from Euglena gracilis

Endo-β-1,3-glucanases from several organisms have attracted much attention in recent years because of their capability for in vitro degrading β-1,3-glucan as a critical step for both biofuels production and short-chain oligosaccharides synthesis. In this study, we biochemically characterized a putative endo-β-1,3-glucanase (EgrGH64) belonging to the family GH64 from the single-cell protist Euglena gracilis. The gene coding for the enzyme was heterologously expressed in a prokaryotic expression system supplemented with 3% (v/v) ethanol to optimize the recombinant protein right folding. Thus, the produced enzyme was highly purified by immobilized-metal affinity and gel filtration chromatography. The enzymatic study demonstrated that EgrGH64 could hydrolyze laminarin (KM 23.5 mg ml−1,kcat 1.20 s−1) and also, but with less enzymatic efficiency, paramylon (KM 20.2 mg ml−1,kcat 0.23 ml mg−1 s−1). The major product of the hydrolysis of both substrates was laminaripentaose. The enzyme could also use ramified β-glucan from the baker's yeast cell wall as a substrate (KM 2.10 mg ml−1, kcat 0.88 ml mg−1 s−1). This latter result, combined with interfacial kinetic analysis evidenced a protein's greater efficiency for the yeast polysaccharide, and a higher number of hydrolysis sites in the β-1,3/β-1,6-glucan. Concurrently, the enzyme efficiently inhibited the fungal growth when used at 1.0 mg/mL (15.4 μM). This study contributes to assigning a correct function and determining the enzymatic specificity of EgrGH64, which emerges as a relevant biotechnological tool for processing β-glucans.Fil: Calloni, Rodrigo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; Argentina. Universidad Nacional del Litoral. Facultad de Bioquímica y Ciencias Biológicas; ArgentinaFil: Muchut, Robertino José. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Santa Fe. Estación Experimental Agropecuaria Reconquista; ArgentinaFil: Garay, Alberto Sergio. Universidad Nacional del Litoral. Facultad de Bioquímica y Ciencias Biológicas; ArgentinaFil: Arias, Diego Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Iglesias, Alberto Alvaro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; Argentina. Universidad Nacional del Litoral. Facultad de Bioquímica y Ciencias Biológicas; ArgentinaFil: Guerrero, Sergio Adrian. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; Argentina. Universidad Nacional del Litoral. Facultad de Bioquímica y Ciencias Biológicas; Argentin

SILICATE NANOPARTICLES PRODUCED BY LABORATORY SIMULATED SPACE WEATHERING OF OLIVINE SINGLE CRYSTALS

Silicate nanoparticles, otherwise referred to as very small grains (VSGs) [1], occur in the interstellar medium. These grains experience a strong structural modification during their lifetime in the diffuse interstellar medium, due to events such as grain-grain collisions and irradiation. Grain amorphization is one of the major effects, transforming crystalline dust concentrated in star envelopes into amorphous silicate grains populating the interstellar medium [2]. Moreover, several studies have pointed out that the main building blocks of these silicates are O, Si, Fe, Mg, Al and Ca, all elements that are among the principal constituents of the Earth’s surface [3], thus leading to the name “astronomical silicates”. However, the structure and chemical evolution together with the origin of these grains are still poorly understood and intensively debated [4,5]. The aim of this study is the simulation of space weathering processes by liquid phase pulsed laser ablation (LP-PLA) on olivine single crystals. We adopt a multiple technique characterization, taking advantage of optical spectroscopy analyses and high- resolution transmission electron microscopy (HR-TEM), to shed light on the structure and chemical evolution of the ablated material

Optical Anisotropy of Porphyrin Nanocrystals Modified by the Electrochemical Dissolution

Reflectance anisotropy spectroscopy (RAS) coupled to an electrochemical cell represents a powerful tool to correlate changes in the surface optical anisotropy to changes in the electrochemical currents related to electrochemical reactions. The high sensitivity of RAS in the range of the absorption bands of organic systems, such as porphyrins, allows us to directly correlate the variations of the optical anisotropy signal to modifications in the solid-state aggregation of the porphyrin molecules. By combining in situ RAS to electrochemical techniques, we studied the case of vacuum-deposited porphyrin nanocrystals, which have been recently observed dissolving through electrochemical oxidation in diluted sulfuric acid. Specifically, we could identify the first stages of the morphological modifications of the nanocrystals, which we could attribute to the single-electron transfers involved in the oxidation reaction; in this sense, the simultaneous variation of the optical anisotropy with the electron transfer acts as a precursor of the dissolution process of porphyrin nanocrystals

Self-assembly of C60 on a ZnTPP/Fe(001)–p(1 × 1)O substrate: observation of a quasi-freestanding C60 monolayer

Fullerene (C(60)) has been deposited in ultrahigh vacuum on top of a zinc tetraphenylporphyrin (ZnTPP) monolayer self-assembled on a Fe(001)–p(1 × 1)O substrate. The nanoscale morphology and the electronic properties of the C(60)/ZnTPP/Fe(001)–p(1 × 1)O heterostructure have been investigated by scanning tunneling microscopy/spectroscopy and ultraviolet photoemission spectroscopy. C(60) nucleates compact and well-ordered hexagonal domains on top of the ZnTPP buffer layer, suggesting a high surface diffusivity of C(60) and a weak coupling between the overlayer and the substrate. Accordingly, work function measurements reveal a negligible charge transfer at the C(60)/ZnTPP interface. Finally, the difference between the energy of the lowest unoccupied molecular orbital (LUMO) and that of the highest occupied molecular orbital (HOMO) measured on C(60) is about 3.75 eV, a value remarkably higher than those found in fullerene films stabilized directly on metal surfaces. Our results unveil a model system that could be useful in applications in which a quasi-freestanding monolayer of C(60) interfaced with a metallic electrode is required

Astronomical silicate nanoparticle analogues produced by pulsed laser ablation on olivine single crystals

Silicate nanoparticles, otherwise referred to as very small grains (VSGs) [1], occur in various astrophysical environments. These grains experience substantial processing (e.g., amorphization) during their lifetime in the diffuse interstellar medium due to events such as grain-grain collisions and irradiation [2]. Moreover, several studies have pointed out that the main building blocks of these silicates are O, Si, Fe, Mg, Al and Ca, all elements that are among the principal constituents of the Earth’s surface [3], thus leading to the name “astronomical silicates”. However, the structure and chemical evolution together with the origin of these grains are still poorly understood and intensively debated [4,5]. The aim of this study is the simulation of space weathering processes on olivine single crystals by liquid phase pulsed laser ablation (LP-PLA). The study of the resulting structure of both the target and the ablated material together with their chemical evolution has been carried out by a multiple technique characterization. In particular, spectroscopy and dynamic light scattering measurements, analyses of the electrostatic properties and reactivity to acids and bases on the obtained colloidal solutions of the ablated nanoproducts have been performed and coupled with highresolution transmission electron microscopy (HR-TEM). Selected olivine target crystals (Fo87) from the São Miguel island (Azores) were analyzed by Scanning Electron Microscopy (SEM) and Energy Dispersive X-ray spectroscopy (EDX). LP-PLA experiments were performed with a Nd:YAG laser focused via a singlet lens onto the surface of the target, which was fixed at the bottom of a polystyrene box filled with 4 ml of deionized water (type 1) to immerge it completely. Laser pulses of 5 ns and 100 mJ simulate the timeframe and energy exchange occurring during grain-grain interstellar collisions [6] and they generate a plasma plume at the crystal/liquid interface. The rapid cooling induced by the confining liquid layer brings about the condensation of the chemical vapor it contains with production of a colloidal solution of nanoparticles. These solutions were analyzed by dynamic light scattering techniques and optical absorption spectroscopy in the range from 200 nm to 1100 nm (6.20 eV - 1.13 eV). Absorption measurements on the colloidal solutions have been compared against reference colloidal solutions dispersed in deionized water (i.e. mesoporous silica [SiO2] nanoparticles, brucite [Mg(OH)2] nanoparticles, aluminum hydroxide [Al(OH)3] nanoparticles, chrysotile [Mg3Si2O5(OH)4] nanotubes, and synthetic forsterite [Mg2SiO4] nanoparticles). Moreover, additional absorption analyses have been carried out as a function of the addition of known aliquots of sulfuric acid and sodium hydroxide solutions. TEM/EDS analyses were then performed on the ablated nanoparticles deposited via electrophoresis on C-coated Cu grids and compositional variations of the ablated target were determined by X-ray photo-emission spectroscopy analyses. The size distribution of LP-PLA synthesized nanoparticles is typically multimodal due to aggregation phenomena. Aggregation is consistent with the measured ζ-potential, which is negative with a relatively low absolute value, within the range 30-50 mV. Nonetheless, a recurrent mode is centered at about 2 nm (hydrodynamic diameter) and it is consistent with the measured size distribution obtained by transmission electron microscopy analysis (average nanoparticles diameter around 3-5 nm). Optical absorption measurements on the ejected material show a main band around 215 nm. This feature is very similar to the “B2 band” reported in several studies on silica glass [7] and ascribed to oxygen vacancies, but its nature is still far to be fully understood. We also found that this feature at 215 nm is very common among both Si and Mg compounds (e.g., Sioxide, Mg-hydroxide, chrysotile). Moreover, additional absorption bands in the range 240-350nm are observed suggesting the formation of new space weathering products as result of the ablation process. Therefore, these results suggest that substantial chemical processing might be expected during space weathering of “typical” interstellar grains into VSGs. Moreover, coupling these experimental results with remote sensing datasets will provide fundamental information about the origin and evolution of these silicate grains

Ordered assembling of Co tetra phenyl porphyrin on oxygen-passivated Fe(001): from single to multilayer films

Tetra-phenyl prophyrins (TPP) are an interesting class of organic molecules characterized by a ring structure with a metal ion in their centre. An ordered growth of such molecules can be obtained even on metallic substrates by means of a proper modification of the reactive interface, as we demonstrated for ZnTPP molecules coupled to oxygen-passivated Fe(001) [G. Bussetti et al. Appl. Surf. Sci. 390, 856 (2016)]. More recently, we focused on CoTPP molecules, characterized by a not nil magnetic moment and therefore of potential interest for magnetic applications. As in the ZnTPP case, our results for one monolayer coverage report the formation of an ordered assembly of flat-lying molecules. However, some differences between the two molecular species are observed in the packing scheme and in the degree of electronic interaction with the substrate. With the aim of reaching, also for CoTPP, a comprehensive view of molecular organization on Fe, we complement here our previous investigations by following the growth of the CoTPP film for increasing coverage, showing that an ordered stacking of such molecules is indeed realized at least up to four molecular layers

Spectroscopic fingerprints for charge localization in the organic semiconductor (DOEO)4[HgBr4]·TCE

Changes of the electronic structure accompanied by charge localization and a transition to an antiferromagnetic ground state were observed in the organic semiconductor (DOEO)4 [HgBr4 ]·TCE. Localization starts in the temperature region of about 150 K and the antiferromagnetic state occurs below 60 K. The magnetic moment of the crystal contains contributions of inclusions (droplets), and individual paramagnetic centers formed by localized holes and free charge carriers at 2 K. Two types of inclusions of 100–400 nm and 2–5 nm sizes were revealed by transmission electron microscopy. Studying the temperature-and angular dependence of electron spin resonance (ESR) spectra revealed fingerprints of antiferromagnetic contributions as well as paramagnetic resonance spectra of individual localized charge carriers. The results point on coexistence of antiferromagnetic long and short range order as evident from a second ESR line. Photoelectron spectroscopy in the VUV, soft and hard X-ray range shows temperature-dependent effects upon crossing the critical temperatures around 60 K and 150 K. The substantially different probing depths of soft and hard X-ray photoelectron spectroscopy yield nformation on the surface termination. The combined investigation using complementary methods at the same sample eveals the close relation of changes in the transport properties and in the energy distribution of electronic states

Observation of Mixed Valence Ru Components in Zn Doped Y2Ru2O7 Pyrochlores

We present a study of Y2 12xZnxRu2O7 pyrochlores as a function of the Zn doping level x. X-ray diffraction measurements show that single-phase samples could be obtained for x < 0.2. Within the allowed range for x, dc conductivity measurements revealed a sizable decrease in resistivity at all the investigated temperatures for Zn doped samples with respect to undoped ones. Neutron diffraction data of the x = 0.2 sample showed that replacing Y3+ by Zn2+ does not result in the formation of oxygen vacancies. X-ray photoemission spectroscopy measurements revealed that part of the Ru ions are in the 5+ oxidation state to balance, in terms of electronic charge, the incorporation of Zn2+. The results give experimental evidence that the heterovalent doping promotes the increase of conductivity in the Y2Ru2O7 pyrochlores, making these systems promising as intermediate temperature solid oxide fuel cell cathodes