Petrogenetic significance of ocellar camptonite dykes in the Ditrau Alkaline Massif, Romania

Camptonite dykes intrude the rift-related Mesozoic igneous body of the Ditrău Alkaline Massif, Eastern Carpathians, Romania. We present and discuss mineral chemical data, major and trace elements, and the Nd isotopic compositions of the dykes in order to define their nature and origin. The dykes are classified as the clinopyroxene-bearing (camptonite–I) and clinopyroxene-free (camptonite–II) varieties. Camptonite–I consists of aluminian–ferroan diopside phenocrysts accompanied by kaersutite, subordinate Ti-rich annite, albite to oligoclase and abundant calcite–albite ocelli. Camptonite–II comprises K-rich hastingsite to magnesiohastingsite, Ti-rich annite, albite to andesine, abundant accessory titanite and apatite, and silicate ocelli filled mainly with plagioclase (An4-34). Age-corrected 143Nd/144Nd ratios vary from 0.51258 to 0.51269. The high εNd values of +4.0 to +6.1 which are consistent with intra-plate composition, together with light rare earth element (LREE), large ion lithophile element (LILE) and high field strength element (HFSE) enrichment in the camptonites is ascribed to the formation of small melt batches of a metasomatised sub-lithospheric mantle source. The presence of an asthenospheric ‘high μ’ ocean island basalt (HIMU–OIB)-type mantle component in the source region has also been revealed. A 1–4% degree of partial melting of an enriched garnet lherzolite mantle source containing pargasitic amphibole followed by fractionation is inferred to have been involved in the generation of the camptonites. They are deduced to be parental melts to the Ditrău Alkaline Massif

The amoebal MAP kinase response to Legionella pneumophila is regulated by DupA

SummaryThe amoeba Dictyostelium discoideum can support replication of Legionella pneumophila. Here we identify the dupA gene, encoding a putative tyrosine kinase/dual-specificity phosphatase, in a screen for D. discoideum mutants altered in allowing L. pneumophila intracellular replication. Inactivation of dupA resulted in depressed L. pneumophila growth and sustained hyperphosphorylation of the amoebal MAP kinase ERK1, consistent with loss of a phosphatase activity. Bacterial challenge of wild-type amoebae induced dupA expression and resulted in transiently increased ERK1 phosphorylation, suggesting that dupA and ERK1 are part of a response to bacteria. Indeed, over 500 of the genes misregulated in the dupA− mutant were regulated in response to L. pneumophila infection, including some thought to have immune-like functions. MAP kinase phosphatases are known to be highly upregulated in macrophages challenged with L. pneumophila. Thus, DupA may regulate a MAP kinase response to bacteria that is conserved from amoebae to mammals

Widespread duplications in the genomes of laboratory stocks of Dictyostelium discoideum.

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.BACKGROUND: Duplications of stretches of the genome are an important source of individual genetic variation, but their unrecognized presence in laboratory organisms would be a confounding variable for genetic analysis. RESULTS: We report here that duplications of 15 kb or more are common in the genome of the social amoeba Dictyostelium discoideum. Most stocks of the axenic 'workhorse' strains Ax2 and Ax3/4 obtained from different laboratories can be expected to carry different duplications. The auxotrophic strains DH1 and JH10 also bear previously unreported duplications. Strain Ax3/4 is known to carry a large duplication on chromosome 2 and this structure shows evidence of continuing instability; we find a further variable duplication on chromosome 5. These duplications are lacking in Ax2, which has instead a small duplication on chromosome 1. Stocks of the type isolate NC4 are similarly variable, though we have identified some approximating the assumed ancestral genotype. More recent wild-type isolates are almost without large duplications, but we can identify small deletions or regions of high divergence, possibly reflecting responses to local selective pressures. Duplications are scattered through most of the genome, and can be stable enough to reconstruct genealogies spanning decades of the history of the NC4 lineage. The expression level of many duplicated genes is increased with dosage, but for others it appears that some form of dosage compensation occurs. CONCLUSION: The genetic variation described here must underlie some of the phenotypic variation observed between strains from different laboratories. We suggest courses of action to alleviate the problem.Published versio

Petrochronology of polygenetic white micas (Naxos, Greece)

Naxos in the Greek Cyclades preserves a type example of polymetamorphism. The southern and northern parts of the island record different Tertiary P–T histories between Eocene and Miocene times, including a blueschist facies event, one or more amphibolite/greenschist facies overprint(s) and contact metamorphism. Age attributions for these events are inconsistent in the literature. Here, we propose a new approach that combines electron probe microanalyzer (EPMA) characterization of the white mica (WM) with $^{39}$Ar-$^{40}$Ar–Rb-Sr multichronometry. Textural–petrographic–compositional observations reveal that the polygenetic WM consists of five different generations: pre-Eocene relicts, paragonite, high-Si phengite, low-Si phengite and muscovite. EPMA mapping of four WM samples, previously analysed by Rb-Sr, reveals major element compositions heterogeneous down to the μm scale. Each WM consists of chemically distinct generations, documenting submicron-scale retrogression of high-pressure (HP) phengite grains to muscovite. Four WM samples from a N-S traverse across the island were analysed by $^{39}$Ar-$^{40}$Ar stepheating, comparing coarse and fine sieve size fractions to obtain overdetermined K-Ar systematics. Fine sieve fractions are richer in Cl than coarse ones. Linear arrays in Cl/K-age isotope correlation diagrams show two predominant WM generations (one Cl-poor at ca. 38 Ma and one Cl-rich at <20 Ma). A lower-grade sample from southern Naxos was less pervasively recrystallized, provides older ages and preserves at least three WM generations, including a relict WM with a pre-Palaeocene K-Ar age, consistent with the high Ar retentivity of WM in the absence of complete recrystallization. The age of the Cl-poor end-member WM approximates the age of the HP event, 38 Ma. Ar inheritance in Cretaceous mica relicts is heterogeneous at the single-grain scale. Comparing the degassing rates of the WM fractions rules out ‘multidomain’ diffusion. As no sample is monomineralic, the degassing rate of each polygenetic mica is instead controlled by the mass balanced sum of the unrelated rate constants of its constituent minerals. Given the commonness of zoned and composite micas, the approach detailed here is potentially useful for reconstructing polyphase metamorphic histories worldwide

Targets downstream of Cdk8 in Dictyostelium development.

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.BACKGROUND: Cdk8 is a component of the mediator complex which facilitates transcription by RNA polymerase II and has been shown to play an important role in development of Dictyostelium discoideum. This eukaryote feeds as single cells but starvation triggers the formation of a multicellular organism in response to extracellular pulses of cAMP and the eventual generation of spores. Strains in which the gene encoding Cdk8 have been disrupted fail to form multicellular aggregates unless supplied with exogenous pulses of cAMP and later in development, cdk8- cells show a defect in spore production. RESULTS: Microarray analysis revealed that the cdk8- strain previously described (cdk8-HL) contained genome duplications. Regeneration of the strain in a background lacking detectable gene duplication generated strains (cdk8-2) with identical defects in growth and early development, but a milder defect in spore generation, suggesting that the severity of this defect depends on the genetic background. The failure of cdk8- cells to aggregate unless rescued by exogenous pulses of cAMP is consistent with a failure to express the catalytic subunit of protein kinase A. However, overexpression of the gene encoding this protein was not sufficient to rescue the defect, suggesting that this is not the only important target for Cdk8 at this stage of development. Proteomic analysis revealed two potential targets for Cdk8 regulation, one regulated post-transcriptionally (4-hydroxyphenylpyruvate dioxygenase (HPD)) and one transcriptionally (short chain dehydrogenase/reductase (SDR1)). CONCLUSIONS: This analysis has confirmed the importance of Cdk8 at multiple stages of Dictyostelium development, although the severity of the defect in spore production depends on the genetic background. Potential targets of Cdk8-mediated gene regulation have been identified in Dictyostelium which will allow the mechanism of Cdk8 action and its role in development to be determined.Published versio

Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains.

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.BACKGROUND: Pseudomonas aeruginosa is one of the most relevant human opportunistic bacterial pathogens. Two strains (PAO1 and PA14) have been mainly used as models for studying virulence of P. aeruginosa. The strain PA14 is more virulent than PAO1 in a wide range of hosts including insects, nematodes and plants. Whereas some of the differences might be attributable to concerted action of determinants encoded in pathogenicity islands present in the genome of PA14, a global analysis of the differential host responses to these P. aeruginosa strains has not been addressed. Little is known about the host response to infection with P. aeruginosa and whether or not the global host transcription is being affected as a defense mechanism or altered in the benefit of the pathogen. Since the social amoeba Dictyostelium discoideum is a suitable host to study virulence of P. aeruginosa and other pathogens, we used available genomic tools in this model system to study the transcriptional host response to P. aeruginosa infection. RESULTS: We have compared the virulence of the P. aeruginosa PAO1 and PA14 using D. discoideum and studied the transcriptional response of the amoeba upon infection. Our results showed that PA14 is more virulent in Dictyostelium than PA01using different plating assays. For studying the differential response of the host to infection by these model strains, D. discoideum cells were exposed to either P. aeruginosa PAO1 or P. aeruginosa PA14 (mixed with an excess of the non-pathogenic bacterium Klebsiella aerogenes as food supply) and after 4 hours, cellular RNA extracted. A three-way comparison was made using whole-genome D. discoideum microarrays between RNA samples from cells treated with the two different strains and control cells exposed only to K. aerogenes. The transcriptomic analyses have shown the existence of common and specific responses to infection. The expression of 364 genes changed in a similar way upon infection with one or another strain, whereas 169 genes were differentially regulated depending on whether the infecting strain was either P. aeruginosa PAO1 or PA14. Effects on metabolism, signalling, stress response and cell cycle can be inferred from the genes affected. CONCLUSION: Our results show that pathogenic Pseudomonas strains invoke both a common transcriptional response from Dictyostelium and a strain specific one, indicating that the infective process of bacterial pathogens can be strain-specific and is more complex than previously thought.Published versio

Stable isotopes of oxygen and hydrogen in meteoric water during the Cryogenian Period

We measured δ18O and δ2H values of muscovite and carbonate mineral separates from metamorphosed carbonate-bearing mudstone layers in late Tonian to early Cryogenian strata, including Sturtian glacial deposits, which were deposited in a coastal setting at an approximate paleolatitude of 30-35°S and now crop out on Islay and the Garvellach Islands, Scotland. From these values, we calculated δ18O and δ2H values of meteoric water that equilibrated with clay at diagenetic conditions which we infer were reached shortly after deposition (i.e. before the end of the Cryogenian Period) because sediment accumulation was rapid due to fast subsidence at that time. This calculation required removal of the effects of exchange with reservoir rocks, metamorphic volatilization and mixing with metamorphic fluids on δ18O and δ2H values. The values we calculated for meteoric water fall within the 2σ ranges δ18O = -1 to -4 ‰ and δ2H = 0 to -23 ‰, respectively. These ranges are similar to present day values at equivalent latitudes. This finding is consistent with sediment accumulation in the Cryogenian Period having occurred in a climate similar to present day (Ice Age) conditions. This conclusion is not at odds with the Snowball Earth hypothesis because one of its predictions is that sediment accumulation occurred as the climate warmed at the end of panglaciation, a prediction supported by sedimentological evidence of multiple glacial advances and retreats in our study area and elsewhere