Molecular Identification of Delphinids and Finless Porpoise (Cetacea) from the Arabian Sea and Bay of Bengal

The exact number of extant delphinid species from seas around India is still debated and the lack of adequate field keys and reliable inventory has resulted in misidentification of several species. As a part of a project to develop a molecular taxonomy of cetaceans from this region, partial sequences of mtDNA cytochrome b were generated from accidentally caught/stranded delphinids and finless porpoise. Species were identified by phylogenetic reconstruction of sample sequences with the reference sequences available in portals GenBank (NCBI) and the web-based program DNA Surveillance. A comparison was made with the homologous sequences of corresponding species from other seas of the world. Our molecular investigations allowed us to identify five species of cetaceans from Indian coasts, including Delphinus capensis, previously reported as D. delphis. We detected unique haplotypes in Indo pacific humpbacked dolphin (Sousa chinensis; n = 2) and finless porpoise (Neophocaena phocaenoides; n = 12) from Indian coast. On the other hand, some haplotypes were shared with other regional populations in spinner dolphin (Stenella longirostris; n = 16) and bottlenose dolphin (Tursiops aduncus; n = 3). Common dolphins (Delphinus capensis; n = 2) had both unique and shared haplotypes including one highly divergent sequence

A note on cetacean distribution in the Indian EEZ and contiguous seas during 2003-07

Relatively little is known about the distribution of cetaceans in Indian seas due to lack of systematic surveys. For collecting data on species distribution, 35 opportunistic surveys were conducted onboard FORV Sagar Sampada between October 2003 and February 2007 in the Indian EEZ and contiguous seas. In 5,254 hours of sighting effort, a total of 473 cetacean records were made with 5,865 individuals. The occurrence of 10 species from three cetacean families was confirmed. The Indo-Pacific bottlenose dolphin was the most frequently sighted species, whereas the spinner dolphin was dominant in terms of abundance. Long-beaked common dolphins, Indo-Pacific hump-backed dolphin and sperm whales were also recorded at frequent intervals. Cetaceans were found to have a wide geographical distribution in the Indian EEZ and contiguous seas. High abundance and species richness were recorded in the Southeastern Arabian Sea and southern Sri Lankan waters. From the information collected during the present study, the platform of opportunity has proved to be a useful means for cetacean surve

Indian Efforts on the Inventorization of Marine Mammal Species for their Conservation and Management

The present study is the first attempt to use molecular tools for identification of marine mammals in India. The objective was to develop a database of genetic sequences for future marine mammal research in addition to confirming the species identity of cetaceans and dugongs using a molecular approach. Partial sequencing of mitochondrial DNA loci was carried out in accidentally caught/stranded specimens of Spinner dolphin (Stenella longirostris), Pantropical spotted dolphin/bridled dolphin (Stenella attenuata), Bottlenose dolphin (Tursiops aduncus), Long-beaked common dolphin (Delphinus capensis), Indopacific humpbacked dolphin (Sousa chinensis), Risso’s dolphin (Grampus griseus), Finless porpoise (Neophocaena phocaenoides), Sperm whale (Physeter macrocephalus), Blue whale (Balaenoptera musculus), Bryde’s whale (Balaenoptera edeni) and Dugong (Dugong dugon). Molecular identification of species was done by phylogenetic reconstruction of the sequences using portals GenBank and DNA Surveillance. Apart from ratifying their morphological identification, the analysis was able to distinguish specimens that otherwise, could not have been identified using conventional approaches. Phylogenetic analysis of the Sousa-Stenella-Tursiops-Delphinus group indicated more or less robust monophyly for all species in this complex, except Delphinus capensis. A sister-group relationship for Sperm whales and Baleen whales was evident, that would place the former closer to the latter than to any other group of toothed whales

Observations on incidental catch of cetaceans in three landing centres along the Indian coast

A short term survey to quantify the number of marine mammals incidentally caught, and interviews to gain perceptions of local fishers towards issues of by-catch, were conducted. A total of 44 cetaceans were recorded as incidental catches at Chennai, Kakinada and Mangalore fishing harbours during 80 days of observation. Six species of dolphins and one species of porpoise were recorded. The spinner dolphin Stenella longirostris was the most frequently caught (38.6%), followed by the finless porpoise Neophocaena phocaenoides (31.8%). Gillnets and purse seines operated from motorised boats accounted for the entire by-catch. It is estimated that 9000–10,000 cetaceans are killed by gillnets every year along the Indian coast. The intricacies and possibilities of reducing cetacean kills by gillnets are discussed in the pape

Stomach contents of cetaceans incidentally caught along Mangalore and Chennai coasts of India

Abstract The stomachs of 32 individuals of seven cetacean species incidentally caught in gill net and purseseine fisheries along Mangalore and Chennai coasts (India) between 2004 and 2006 were examined. The whole stomach (fore-gut, mid-gut and hind-gut) was examined in all cases. Prey remains (666 prey items comprising six species of teleosts, one crustacean and one squid species) were found in the stomachs of eight individuals (the remaining 24 stomachs were found to be empty). All cetaceans were found to feed mostly on teleosts with wide range of trophic levels. Based on an index that included frequency of occurrence, percentage by number and by weight, the oil sardine Sardinella longiceps was the main prey in the sample. Cetaceans appear to favour both pelagic as well as demersal prey, possibly indicating surface and benthic feeding habits

An ordinary differential equation for velocity distribution and dip-phenomenon in open channel flows

An ordinary differential equation for velocity distribution in open channel flows is presented based on an analysis of the Reynolds-Averaged Navier-Stokes equations and a log-wake modified eddy viscosity distribution. This proposed equation allows to predict the velocity-dip-phenomenon, i.e. the maximum velocity below the free surface. Two different degrees of approximations are presented, a semi-analytical solution of the proposed ordinary differential equation, i.e. the full dip-modified-log-wake law and a simple dip-modified-log-wake law. Velocity profiles of the two laws and the numerical solution of the ordinary differential equation are compared with experimental data. This study shows that the dip correction is not efficient for a small Coles' parameter, accurate predictions require larger values. The simple dip-modified-log-wake law shows reasonable agreement and seems to be an interesting tool of intermediate accuracy. The full dip-modified-log-wake law, with a parameter for dip-correction obtained from an estimation of dip positions, provides accurate velocity profiles

Mitochondrial DNA sequencing of cetaceans and dugong from the Indian seas for their conservation and management

Understanding taxonomy is fundamental to conservation efforts of bioresources. The units on which conservation is based are determined largely by species designation. Ambiguous identification of species may lead to erroneous conclusions, which may be more serious than lack of understanding of the population structure and status; for example, conclusions such as loss of genetic variability(e.g., by unwitting extinction of a species).In cetaceans (whales,dolphins andporpoises), morphological features are subtle and difficult to compare because of the rarity of specimens or widespread distributions.Identifying the geographical variants of recognized species of cetaceans is more cumbersome using the conventional approaches and in this context molecular genetics can provide significant contributions to taxonomic understanding of inter and intra-specific variations for conservation and management purposes. Similarly, in dugong,a critically endangered marine mammal, in order to devise adequate conservation andmanagement strategies for the species of concern, it is essential to study the population genetic characteristics of the species throughout the range of its distribution. DNA sequence analysis has become a powerful tool for conservation

Human macrophages differentiated in the presence of vitamin D3 restrict dengue virus infection and innate responses by downregulating mannose receptor expression

ABSTARCT: Severe dengue disease is associated with high viral loads and overproduction of pro-inflammatory cytokines, suggesting impairment in the control of dengue virus (DENV) and the mechanisms that regulate cytokine production. Vitamin D3 has been described as an important modulator of immune responses to several pathogens. Interestingly, increasing evidence has associated vitamin D with decreased DENV infection and early disease recovery, yet the molecular mechanisms whereby vitamin D reduces DENV infection are not well understood. METHODS AND PRINCIPAL FINDINGS: Macrophages represent important cell targets for DENV replication and consequently, they are key drivers of dengue disease. In this study we evaluated the effect of vitamin D3 on the differentiation of monocyte-derived macrophages (MDM) and their susceptibility and cytokine response to DENV. Our data demonstrate that MDM differentiated in the presence of vitamin D3 (D3-MDM) restrict DENV infection and moderate the classical inflammatory cytokine response. Mechanistically, vitamin D3-driven differentiation led to reduced surface expression of C-type lectins including the mannose receptor (MR, CD206) that is known to act as primary receptor for DENV attachment on macrophages and to trigger of immune signaling. Consequently, DENV bound less efficiently to vitamin D3-differentiated macrophages, leading to lower infection. Interestingly, IL-4 enhanced infection was reduced in D3-MDM by restriction of MR expression. Moreover, we detected moderate secretion of TNF-α, IL-1β, and IL-10 in D3-MDM, likely due to less MR engagement during DENV infection. CONCLUSIONS/SIGNIFICANCE: Our findings reveal a molecular mechanism by which vitamin D counteracts DENV infection and progression of severe disease, and indicates its potential relevance as a preventive or therapeutic candidate

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