90 research outputs found
Semiflexible polymer conformation, distribution and migration in microcapillary flows
The flow behavior of a semiflexible polymer in microchannels is studied using
Multiparticle Collision Dynamics (MPC), a particle-based hydrodynamic
simulation technique. Conformations, distributions, and radial cross-streamline
migration are investigated for various bending rigidities, with persistence
lengths Lp in the range 0.5 < Lp/Lr < 30. The flow behavior is governed by the
competition between a hydrodynamic lift force and steric wall-repulsion, which
lead to migration away from the wall, and a locally varying flow-induced
orientation, which drives polymer away from the channel center and towards the
wall. The different dependencies of these effects on the polymer bending
rigidity and the flow velocity results in a complex dynamical behavior.
However, a generic effect is the appearance of a maximum in the monomer and the
center-of-mass distributions, which occurs in the channel center for small flow
velocities, but moves off-center at higher velocities.Comment: in press at J. Phys. Condens. Matte
Flow of red blood cells suspensions through hyperbolic microcontractions
The present study uses a hyperbolic microchannel with a low aspect ratio (AR) to investigate how the red blood cells (RBCs) deform under conditions of both extensional and shear induced flows. The deformability is presented by the degree of the deformation index (DI) of the flowing RBCs throughout the microchannel at its centerline. A suitable image analysis technique is used for semi-automatic measurements of average DIs, velocity and strain rate of the RBCs travelling in the regions of interest. The results reveal a strong deformation of RBCs under both extensional and shear stress dominated flow conditions
Dynamics of Fluid Vesicles in Oscillatory Shear Flow
The dynamics of fluid vesicles in oscillatory shear flow was studied using
differential equations of two variables: the Taylor deformation parameter and
inclination angle . In a steady shear flow with a low viscosity
of internal fluid, the vesicles exhibit steady tank-treading
motion with a constant inclination angle . In the oscillatory flow
with a low shear frequency, oscillates between or
around for zero or finite mean shear rate ,
respectively. As shear frequency increases, the vesicle
oscillation becomes delayed with respect to the shear oscillation, and the
oscillation amplitude decreases. At high with , another limit-cycle oscillation between and
is found to appear. In the steady flow, periodically rotates
(tumbling) at high , and and the vesicle shape
oscillate (swinging) at middle and high shear rate. In the
oscillatory flow, the coexistence of two or more limit-cycle oscillations can
occur for low in these phases. For the vesicle with a fixed shape,
the angle rotates back to the original position after an oscillation
period. However, it is found that a preferred angle can be induced by small
thermal fluctuations.Comment: 11 pages, 13 figure
Two-Dimensional Fluctuating Vesicles in Linear Shear Flow
The stochastic motion of a two-dimensional vesicle in linear shear flow is
studied at finite temperature. In the limit of small deformations from a
circle, Langevin-type equations of motion are derived, which are highly
nonlinear due to the constraint of constant perimeter length. These equations
are solved in the low temperature limit and using a mean field approach, in
which the length constraint is satisfied only on average. The constraint
imposes non-trivial correlations between the lowest deformation modes at low
temperature. We also simulate a vesicle in a hydrodynamic solvent by using the
multi-particle collision dynamics technique, both in the quasi-circular regime
and for larger deformations, and compare the stationary deformation correlation
functions and the time autocorrelation functions with theoretical predictions.
Good agreement between theory and simulations is obtained.Comment: 13 pages, 7 figure
Effective swimming strategies in low Reynolds number flows
The optimal strategy for a microscopic swimmer to migrate across a linear
shear flow is discussed. The two cases, in which the swimmer is located at
large distance, and in the proximity of a solid wall, are taken into account.
It is shown that migration can be achieved by means of a combination of sailing
through the flow and swimming, where the swimming strokes are induced by the
external flow without need of internal energy sources or external drives. The
structural dynamics required for the swimmer to move in the desired direction
is discussed and two simple models, based respectively on the presence of an
elastic structure, and on an orientation dependent friction, to control the
deformations induced by the external flow, are analyzed. In all cases, the
deformation sequence is a generalization of the tank-treading motion regimes
observed in vesicles in shear flows. Analytic expressions for the migration
velocity as a function of the deformation pattern and amplitude are provided.
The effects of thermal fluctuations on propulsion have been discussed and the
possibility that noise be exploited to overcome the limitations imposed on the
microswimmer by the scallop theorem have been discussed.Comment: 14 pages, 5 figure
Biophysics of Malarial Parasite Exit from Infected Erythrocytes
Upon infection and development within human erythrocytes, P. falciparum induces alterations to the infected RBC morphology and bio-mechanical properties to eventually rupture the host cells through parasitic and host derived proteases of cysteine and serine families. We used previously reported broad-spectrum inhibitors (E64d, EGTA-AM and chymostatin) to inhibit these proteases and impede rupture to analyze mechanical signatures associated with parasite escape. Treatment of late-stage iRBCs with E64d and EGTA-AM prevented rupture, resulted in no major RBC cytoskeletal reconfiguration but altered schizont morphology followed by dramatic re-distribution of three-dimensional refractive index (3D-RI) within the iRBC. These phenotypes demonstrated several-fold increased iRBC membrane flickering. In contrast, chymostatin treatment showed no 3D-RI changes and caused elevated fluctuations solely within the parasitophorous vacuole. We show that E64d and EGTA-AM supported PV breakdown and the resulting elevated fluctuations followed non-Gaussian pattern that resulted from direct merozoite impingement against the iRBC membrane. Optical trapping experiments highlighted reduced deformability of the iRBC membranes upon rupture-arrest, more specifically in the treatments that facilitated PV breakdown. Taken together, our experiments provide novel mechanistic interpretations on the role of parasitophorous vacuole in maintaining the spherical schizont morphology, the impact of PV breakdown on iRBC membrane fluctuations leading to eventual parasite escape and the evolution of membrane stiffness properties of host cells in which merozoites were irreversibly trapped, recourse to protease inhibitors. These findings provide a comprehensive, previously unavailable, body of information on the combined effects of biochemical and biophysical factors on parasite egress from iRBCs.Singapore. Agency for Science, Technology and ResearchSingapore-MIT AllianceGlobal Enterprise for Micro-Mechanics and Molecular MedicineNational University of SingaporeNational Institutes of Health (U.S.) (Grant R01 HL094270-01A1)National Institutes of Health (U.S.) (Grant 1-R01-GM076689-01)National Institutes of Health (U.S.) (P41-RR02594-18-24
Coupling of Rotational Motion with Shape Fluctuations of Core-shell Microgels Having Tunable Softness
The influence of shape fluctuations on deformable thermosensitive microgels
in aqueous solution is investigated by dynamic light scattering (DLS) and
depolarized dynamic light scattering (DDLS). The systems under study consist of
a solid core of polystyrene and a thermosensitive shell of cross-linked
poly(N-isopropylacrylamide) (PNIPA) without and with embedded palladium
nanoparticles. PNIPA is soluble in water, but has a lower critical solution
temperature at 32 C (LCST). Below the LCST the PNIPA shell is swollen. Here we
find that besides translational and rotational diffusion, the particles exhibit
additional dynamics resulting from shape fluctuations. This leads to a
pronounced apparent increase of the rotational diffusion coefficient. Above the
transition temperature the shell collapses and provides a rather tight envelope
of the core. In this state the dynamics of the shell is frozen and the
core-shell particles behave like hard spheres. A simple physical model is
presented to capture and explain the essentials of the coupling of rotational
motion and shape fluctuations.Comment: 9 pages, 7 figure
Shape Transformations of Membrane Vesicles from Amphiphilic Triblock Copolymers: A Dissipative Particle Dynamics Simulation Study
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