Segmentation of Arabic Handwritten Documents into Text Lines using Watershed Transform

A crucial task in character recognition systems is the segmentation of the document into text lines and especially if it is handwritten. When dealing with non-Latin document such as Arabic, the challenge becomes greater since in addition to the variability of writing, the presence of diacritical points and the high number of ascender and descender characters complicates more the process of the segmentation. To remedy with this complexity and even to make this difficulty an advantage since the focus is on the Arabic language which is semi-cursive in nature, a method based on the Watershed Transform technique is proposed. Tested on «Handwritten Arabic Proximity Datasets» a segmentation rate of 93% for a 95% of matching score is achieved

Service oriented centered e-health solution for monitoring and preventing chronic diseases

The modern and continuously changing lifestyles in almost all parts of the world resulted in an increase in the incidence of chronic diseases (CDs). To reduce risks associated with chronic diseases, health professionals are studying various clinical solutions. As a result of recent advances in sensing technology, wireless communications, and distributed communication, the monitoring of patients\u27 health condition and the elaboration of prevention plans are considered the most promising solutions for the treatment of chronic diseases. In this paper, we propose a novel framework for monitoring chronic diseases and tracking their vital signs. The framework relies on the service orientation concepts and standards to integrate various subsystems. Monitoring of subjects\u27 health condition, using various sensors and wireless devices, aims to proactively detect any risk of chronic diseases. The system will allow generating and customizing preventive plans dynamically according to the subject\u27s health profile and context while considering many impelling parameters. As a proof of concept of our monitoring and tracking schemes, we have considered a case study for which we have collected and analyzed preliminary data

An efficient and low-cost method to create high-density nitrogen-vacancy centers in CVD diamond for sensing applications

The negatively charged Nitrogen-Vacancy (NV-) center in diamond is one of the most versatile and robust quantum sensors suitable for quantum technologies, including magnetic field and temperature sensors. For precision sensing applications, densely packed NV- centers within a small volume are preferable due to benefiting from 1/N^1/2 sensitivity enhancement (N is the number of sensing NV centers) and efficient excitation of NV centers. However, methods for quickly and efficiently forming high concentrations of NV- centers are in development stage. We report an efficient, low-cost method for creating high-density NV- centers production from a relatively low nitrogen concentration based on high-energy photons from Ar+ plasma. This study was done on type-IIa, single crystal, CVD-grown diamond substrates with an as-grown nitrogen concentration of 1 ppm. We estimate an NV- density of ~ 0.57 ppm (57%) distributed homogeneously over 200 um deep from the diamond surface facing the plasma source based on optically detected magnetic resonance and fluorescence confocal microscopy measurements. The created NV-s have a spin-lattice relaxation time (T1) of 5 ms and a spin-spin coherence time (T2) of 4 us. We measure a DC magnetic field sensitivity of ~ 104 nT Hz^-1/2, an AC magnetic field sensitivity of ~ 0.12 pT Hz^-1/2, and demonstrate real-time magnetic field sensing at a rate over 10 mT s-1 using an active sample volume of 0.2 um3

Concurrent Acquisition of a Single Nucleotide Polymorphism in Diverse Influenza H5N1 Clade 2.2 Sub-clades

Highly pathogenic Influenza A H5N1 was first identified in Guangdong Province in 1996, followed by human cases in Hong Kong in 1997 1,2. The number of confirmed human cases now exceeds 300 and the associated Case Fatality Rate exceeds 60% 3. The genetic diversity of the serotype continues to increase. Four distinct clades or sub-clades have been linked to human cases 4-7. The gradual genetic changes identified in the sub-clades have been attributed to copy errors by viral encoded polymerases that lack an editing function, thereby resulting in antigenic drift 8. We report here the concurrent acquisition of the same polymorphism by multiple, genetically distinct, clade 2.2 sub-clades in Egypt, Russia, Kuwait, and Ghana. These changes are not easily explained by the current theory of “random mutation” through copy error, and are more easily explained by recombination with a common source. The recombination role is further supported by the high fidelity replication in swine influenza 9 and aggregation of single nucleotide polymorphisms in H5N1 clade 2.2 hemagglutinin 10

H5N1 Clade 2.2 Polymorphism Tracing Identifies Influenza Recombination and Potential Vaccine Targets

Highly pathogenic Influenza A H5N1 was first identified in Guangdong Province in 1996, followed by human cases in Hong Kong in 1997 1. The number of confirmed human cases now exceeds 300 and the associated Case Fatality Rate exceeds 60% 2. The genetic diversity of the serotype continues to increase. Four distinct clades or sub-clades have been linked to human cases 3.4. The gradual genetic changes identified in the sub-clades have been attributed to copy errors by viral encoded polymerases that lack an editing function, thereby resulting in antigenic drift 5. We traced polymorphism acquisition in Clade 2.2 sequences. We report here the concurrent acquisition of the same polymorphism by multiple, genetically distinct, Clade 2.2 sub-clades in Egypt, Russia and Ghana. These changes are not easily explained by the current theory of “random mutation” through copy error, and are more easily explained by recombination with a common source. This conclusion is supported by additional polymorphisms shared by Clade 2.2 isolates in Egypt, Nigeria and Germany including aggregation of regional polymorphisms from each of these areas into a single Nigerian human hemagglutinin gene

Germination and Seedling Growth of a Set of Rapeseed (Brassica napus) Varieties under Drought Stress Conditions

Drought stress is one of the major abiotic factors affecting seed germination and plant growth especially in arid and semi-arid regions. In this study, we investigated the effects of drought stress on seed germination and seedling growth of five varieties of rapeseed. Seven drought stress levels of zero (control), -3, -5, -7, -9, -11 and -13 bars were performed using polyethylene glycol-6000 (PEG-6000). A completely randomized design with three replications was used for this experiment. Germination percentage (GP), germination rate (GR), mean germination time (MGT), root length (RL) and shoot length (SL) were measured to evaluate the varieties response to PEG-induced drought stress. Drought stress, variety and the interaction drought × variety had a significant effect on all studied parameters. GP and GR decreased with the increase in stress level, while MGT increased. There were no seeds germinated for all varieties at -11 bars and -13 bars. Shoot length decreased with increasing drought stress but different varieties show different performance under stress environment. Root length decreased with increasing level of severe drought stress. However, the presence of moderate drought stress could even improve the root growth of the investigated varieties. The varieties ‘INRA-CZH2' and ‘INRA-CZH3' exhibited the highest germination percentage and the best early seedling growth. Thus, they could be recommended for environments with early cropping cycle drought

Bioassay- and metabolomics-guided screening of bioactive soil actinomycetes from the ancient city of Ihnasia, Egypt

Literature surveys, taxonomical differences, and bioassay results have been utilized in the discovery of new natural products to aid in Actinomycetes isolate-selection. However, no or less investigation have been done on establishing the differences in metabolomic profiles of the isolated microorganisms. The study aims to utilise bioassay- and metabolomics-guided tools that included dereplication study and multivariate analysis of the NMR and mass spectral data of microbial extracts to assist the selection of isolates for scaling-up the production of antimicrobial natural products. A total of 58 actinomycetes were isolated from different soil samples collected from Ihnasia City, Egypt and screened for their antimicrobial activities against indicator strains that included Bacillus subtilis, Escherichia coli, methicillin-resistant Staphylococcus aureus and Candida albicans. A number of 25 isolates were found to be active against B. subtilis and/or to at least one of the tested indicator strains. Principal component analyses showed chemical uniqueness for four outlying bioactive actinomycetes extracts. In addition, Orthogonal Projections to Latent Structures Discriminant Analysis (OPLS-DA) and dereplication study led us to further select two outlying anti-MRSA active isolates MS.REE.13 and 22 for scale-up work. MS.REE.13 and 22 exhibited zones of inhibition at 19 and 13 mm against MRSA, respectively. A metabolomics-guided approach provided the steer to target the bioactive metabolites (P<0.01) present in a crude extract or fraction even at nanogram levels but it was a challenge that such low-yielding bioactive natural products would be feasible to isolate. Validated to occur only on the active side of OPLSDA loadings plot, the isolated compounds exhibited medium to weak antibiotic activity with MIC values between 250 and 800 μM. Two new compounds, P_24306 (C10H13N2) and N_12799 (C18H32O3) with MICs of 795 and 432 μM, were afforded from the scale-up of MS.REE. 13 and 22, respectively

Kinetic and thermodynamic study of the adsorption of As(III) from aqueous solutions by naturally occurring and modified montmorillonites

[EN] Adsorption of As(III) from aqueous solutions using naturally occurring and modified Algerian montmorillonites was investigated as a function of contact time, pH and temperature. Kinetic studies reveal that uptake of As(III) ions is rapid within the first 3 hours and it slows down thereafter. Equilibrium studies show that As(III) shows the highest affinity towards Acidic-montmorillonite even at very low concentration of arsenic. A pseudo-second-order chemical reaction model was obtained for As(III). Adsorption isotherms of As(III) fitted the Langmuir and Freundlich isotherm models well. From the thermodynamic parameters, it is concluded that adsorption is exothermic, spontaneous and favorable. The results suggest that M1, M2 and Acidic-M2 could be used as effective filtering materials for removal of arsenic from water.This work has been financed by the AECID (projects AECID-PCI A/019533/08, A/023858/09 and C/031332/10) and Ministerio de Ciencia e Innovación (project MAT2010-15273). The National Agency for the Development of University Research (CRSTRA), the Directorate General of Scientific Research and Technological Development (DGRSDT) of Algeria.Zehhaf, A.; Benyouncef, A.; Quijada Tomás, C.; Taleb, S.; Morallón, E. (2012). Kinetic and thermodynamic study of the adsorption of As(III) from aqueous solutions by naturally occurring and modified montmorillonites. Biointerface Research in Applied Chemistry. 2(3):350-359. http://hdl.handle.net/10251/51537S3503592

Concurrent Acquisition of a Single Nucleotide Polymorphism in Diverse Influenza H5N1 Clade 2.2 Sub-clades

Highly pathogenic Influenza A H5N1 was first identified in Guangdong Province in 1996, followed by human cases in Hong Kong in 1997. The number of confirmed human cases now exceeds 300, and the associated Case Fatality Rate exceeds 60%. The genetic diversity of the serotype continues to increase. Four distinct clades or sub-clades have been linked to human cases. The gradual genetic changes identified in the sub-clades have been attributed to copy errors by viral encoded polymerases that lack an editing function, thereby resulting in antigenic drift. We report here the concurrent acquisition of the same polymorphism by multiple, genetically distinct, clade 2.2 sub-clades in Egypt, Russia, and Ghana. These changes are not easily explained by the current theory of &#x201c;random mutation&#x201d; through copy error, and are more easily explained by recombination with a common source. This conclusion is supported by additional polymorphisms shared by clade 2.2 isolates in Egypt and Germany