14,713 research outputs found
Strichartz estimates for the Schr\"odinger equation on polygonal domains
We prove Strichartz estimates with a loss of derivatives for the
Schr\"odinger equation on polygonal domains with either Dirichlet or Neumann
homogeneous boundary conditions. Using a standard doubling procedure, estimates
the on polygon follow from those on Euclidean surfaces with conical
singularities. We develop a Littlewood-Paley squarefunction estimate with
respect to the spectrum of the Laplacian on these spaces. This allows us to
reduce matters to proving estimates at each frequency scale. The problem can be
localized in space provided the time intervals are sufficiently small.
Strichartz estimates then follow from a result of the second author regarding
the Schr\"odinger equation on the Euclidean cone.Comment: 12 page
Fuel cells - A review of government-sponsored research, 1950-1964
Handbook on fuel cell research and technolog
Analyzing Machupo virus-receptor binding by molecular dynamics simulations
In many biological applications, we would like to be able to computationally
predict mutational effects on affinity in protein-protein interactions.
However, many commonly used methods to predict these effects perform poorly in
important test cases. In particular, the effects of multiple mutations,
non-alanine substitutions, and flexible loops are difficult to predict with
available tools and protocols. We present here an existing method applied in a
novel way to a new test case; we interrogate affinity differences resulting
from mutations in a host-virus protein-protein interface. We use steered
molecular dynamics (SMD) to computationally pull the machupo virus (MACV) spike
glycoprotein (GP1) away from the human transferrin receptor (hTfR1). We then
approximate affinity using the maximum applied force of separation and the area
under the force-versus-distance curve. We find, even without the rigor and
planning required for free energy calculations, that these quantities can
provide novel biophysical insight into the GP1/hTfR1 interaction. First, with
no prior knowledge of the system we can differentiate among wild type and
mutant complexes. Moreover, we show that this simple SMD scheme correlates well
with relative free energy differences computed via free energy perturbation.
Second, although the static co-crystal structure shows two large
hydrogen-bonding networks in the GP1/hTfR1 interface, our simulations indicate
that one of them may not be important for tight binding. Third, one viral site
known to be critical for infection may mark an important evolutionary
suppressor site for infection-resistant hTfR1 mutants. Finally, our approach
provides a framework to compare the effects of multiple mutations, individually
and jointly, on protein-protein interactions.Comment: 33 pages, 8 figures, 5 table
Quantum Error Correction on Linear Nearest Neighbor Qubit Arrays
A minimal depth quantum circuit implementing 5-qubit quantum error correction
in a manner optimized for a linear nearest neighbor architecture is described.
The canonical decomposition is used to construct fast and simple gates that
incorporate the necessary swap operations. Simulations of the circuit's
performance when subjected to discrete and continuous errors are presented. The
relationship between the error rate of a physical qubit and that of a logical
qubit is investigated with emphasis on determining the concatenated error
correction threshold.Comment: 4 pages, 5 figure
Quantum computing with nearest neighbor interactions and error rates over 1%
Large-scale quantum computation will only be achieved if experimentally
implementable quantum error correction procedures are devised that can tolerate
experimentally achievable error rates. We describe a quantum error correction
procedure that requires only a 2-D square lattice of qubits that can interact
with their nearest neighbors, yet can tolerate quantum gate error rates over
1%. The precise maximum tolerable error rate depends on the error model, and we
calculate values in the range 1.1--1.4% for various physically reasonable
models. Even the lowest value represents the highest threshold error rate
calculated to date in a geometrically constrained setting, and a 50%
improvement over the previous record.Comment: 4 pages, 8 figure
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