Multifrequency Method for Mapping Active Galactic Nuclei with Allowance for the Frequency-Dependent Image Shift

We consider the problem of multifrequency VLBA image synthesis and spectral-index mapping for active galactic nuclei related to the necessity of taking into account the frequency-dependent image shift. We describe our generalized multifrequency synthesis algorithm with a spectral correction based on the maximum entropy method. The results of our processing of multifrequency VLBI data for the radio sources J2202+4216, J0336+3218, and J1419+5423 are presented.Comment: 12 pages, 2 tables, 6 figure

Configuration of the global magnetic field in AGN parsec-scale jets

The magnetic field plays a significant role in the phenomenon of highly collimated jets of active galactic nuclei (AGN). Relativistic effects prevent the direct reconstruction of the magnetic field direction as transverse to electric vectors on radio maps. We determined the topology of the \textbf{B}-field by modeling the transverse distributions of the total and linearly polarized intensity, polarization degree, and deviation of the polarization direction from the local jet axis and by further comparison with observational data. We consider (i) a helical field with a different twist angle; (ii) a toroidal field on the jet axis surrounded by a sheath with a longitudinal field. In the latter scenario, we consider different sheath thickness relative to the spine. We assumed the sheath velocity is equal to or less than that of the spine. The relativistic effects have been considered for a general case, under which the axis and velocity vector of the jet and radial directions do not coincide. Our simulations reproduce the main features of the observed transverse profiles of polarization characteristics in parsec-scale AGN jets. The model transverse distribution shapes of the polarization properties are found to be strongly influenced by kinematic and geometric parameters of an outflow. We demonstrated it for three AGNs having different but typical polarization patterns revealed on radio maps. For each of these objects, we identified the model parameters, which provide a qualitative correspondence of theoretical profiles with those obtained from observations, indicating that the \textbf{B}-field is strongly ordered on parsec scales.Comment: 16 pages, 11 figures, 2 table

The Relation between Radio Polarization and Gamma-ray Emission in AGN Jets

We have compared the parsec-scale jet linear polarization properties of the Fermi LAT-detected and non-detected sources in the complete flux-density-limited (MOJAVE-1) sample of highly beamed AGN. Of the 123 MOJAVE sources, 30 were detected by the LAT during its first three months of operation. We find that during the era since the launch of Fermi, the unresolved core components of the LAT-detected jets have significantly higher median fractional polarization at 15 GHz. This complements our previous findings that these LAT sources have higher apparent jet speeds, brightness temperatures and Doppler factors, and are preferentially found in higher activity states.Comment: 6 pages, 3 figures, to appear in the proceedings of "High Energy Phenomena In Relativistic Outflows II" (Buenos Aires, Argentina, October 26-30, 2009) International Journal of Modern Physics

Constraints on particles and fields from full Stokes observations of AGN

Combined polarization imaging of radio jets from Active Galactic Nuclei (AGN) in circular and linear polarization, also known as full Stokes imaging, has the potential to constrain both the magnetic field structure and particle properties of jets. Although only a small fraction of the emission when detected, typically less than a few tenths of a percent but up to as much as a couple of percent in the strongest resolved sources, circular polarization directly probes the magnetic field and particles within the jet itself and is not expected to be modified by external screens. A key to using full Stokes observations to constrain jet properties is obtaining a better understanding of the emission of circular polarization, including its variability and spectrum. We discuss what we have learned so far from parsec scale monitoring observations in the MOJAVE program and from multi-frequency observations of selected AGN.                                                                                                                </p

MOJAVE: Monitoring of Jets in Active Galactic Nuclei with VLBA Experiments. VIII. Faraday Rotation in Parsec-scale AGN Jets

We report observations of Faraday rotation measures for a sample of 191 extragalactic radio jets observed within the MOJAVE program. Multifrequency Very Long Baseline Array observations were carried out over 12 epochs in 2006 at four frequencies between 8 and 15 GHz. We detect parsec-scale Faraday rotation measures in 149 sources and find the quasars to have larger rotation measures on average than BL Lac objects. The median core rotation measures are significantly higher than in the jet components. This is especially true for quasars where we detect a significant negative correlation between the magnitude of the rotation measure and the de-projected distance from the core. We perform detailed simulations of the observational errors of total intensity, polarization, and Faraday rotation, and concentrate on the errors of transverse Faraday rotation measure gradients in unresolved jets. Our simulations show that the finite image restoring beam size has a significant effect on the observed rotation measure gradients, and spurious gradients can occur due to noise in the data if the jet is less than two beams wide in polarization. We detect significant transverse rotation measure gradients in four sources (0923+392, 1226+023, 2230+114, and 2251+158). In 1226+023 the rotation measure is for the first time seen to change sign from positive to negative over the transverse cuts, which supports the presence of a helical magnetic field in the jet. In this source we also detect variations in the jet rotation measure over a timescale of three months, which are difficult to explain with external Faraday screens and suggest internal Faraday rotation. By comparing fractional polarization changes in jet components between the four frequency bands to depolarization models, we find that an external purely random Faraday screen viewed through only a few lines of sight can explain most of our polarization observations, but in some sources, such as 1226+023 and 2251+158, internal Faraday rotation is needed

Nanopore sequencing and assembly of a human genome with ultra-long reads

We report the sequencing and assembly of a reference genome for the human GM12878 Utah/Ceph cell line using the MinION (Oxford Nanopore Technologies) nanopore sequencer. 91.2 Gb of sequence data, representing ~30× theoretical coverage, were produced. Reference-based alignment enabled detection of large structural variants and epigenetic modifications. De novo assembly of nanopore reads alone yielded a contiguous assembly (NG50 ~3 Mb). Next, we developed a protocol to generate ultra-long reads (N50 > 100kb, up to 882 kb). Incorporating an additional 5×-coverage of these data more than doubled the assembly contiguity (NG50 ~6.4 Mb). The final assembled genome was 2,867 million bases in size, covering 85.8% of the reference. Assembly accuracy, after incorporating complementary short-read sequencing data, exceeded 99.8%. Ultra-long reads enabled assembly and phasing of the 4 Mb major histocompatibility complex (MHC) locus in its entirety, measurement of telomere repeat length and closure of gaps in the reference human genome assembly GRCh38