128 research outputs found

    Whole genome sequencing for USH2A-associated disease reveals several pathogenic deep-intronic variants that are amenable to splice correction

    Full text link
    A significant number of individuals with a rare disorder such as Usher syndrome (USH) and (non-)syndromic autosomal recessive retinitis pigmentosa (arRP) remain genetically unexplained. Therefore, we assessed subjects suspected of USH2A-associated disease and no or mono-allelic USH2A variants using whole genome sequencing (WGS) followed by an improved pipeline for variant interpretation to provide a conclusive diagnosis. One hundred subjects were screened using WGS to identify causative variants in USH2A or other USH/arRP-associated genes. In addition to the existing variant interpretation pipeline, a particular focus was put on assessing splice-affecting properties of variants, both in silico and in vitro. Also structural variants were extensively addressed. For variants resulting in pseudoexon inclusion, we designed and evaluated antisense oligonucleotides (AONs) using minigene splice assays and patient-derived photoreceptor precursor cells. Biallelic variants were identified in 49 of 100 subjects, including novel splice-affecting variants and structural variants, in USH2A or arRP/USH-associated genes. Thirteen variants were shown to affect USH2A pre-mRNA splicing, including four deep-intronic USH2A variants resulting in pseudoexon inclusion, which could be corrected upon AON treatment. We have shown that WGS, combined with a thorough variant interpretation pipeline focused on assessing pre-mRNA splicing defects and structural variants, is a powerful method to provide subjects with a rare genetic condition, a (likely) conclusive genetic diagnosis. This is essential for the development of future personalized treatments and for patients to be eligible for such treatments

    CT/MRI and CEUS LI-RADS Major Features Association with Hepatocellular Carcinoma: Individual Patient Data Meta-Analysis

    Full text link
    Background The Liver Imaging Reporting and Data System (LI-RADS) assigns a risk category for hepatocellular carcinoma (HCC) to imaging observations. Establishing the contributions of major features can inform the diagnostic algorithm. Purpose To perform a systematic review and individual patient data meta-analysis to establish the probability of HCC for each LI-RADS major feature using CT/MRI and contrast-enhanced US (CEUS) LI-RADS in patients at high risk for HCC. Materials and Methods Multiple databases (MEDLINE, Embase, Cochrane Central Register of Controlled Trials, and Scopus) were searched for studies from January 2014 to September 2019 that evaluated the accuracy of CT, MRI, and CEUS for HCC detection using LI-RADS (CT/MRI LI-RADS, versions 2014, 2017, and 2018; CEUS LI-RADS, versions 2016 and 2017). Data were centralized. Clustering was addressed at the study and patient levels using mixed models. Adjusted odds ratios (ORs) with 95% CIs were determined for each major feature using multivariable stepwise logistic regression. Risk of bias was assessed using Quality Assessment of Diagnostic Accuracy Studies 2 (QUADAS-2) (PROSPERO protocol: CRD42020164486). Results A total of 32 studies were included, with 1170 CT observations, 3341 MRI observations, and 853 CEUS observations. At multivariable analysis of CT/MRI LI-RADS, all major features were associated with HCC, except threshold growth (OR, 1.6; 95% CI: 0.7, 3.6; P = .07). Nonperipheral washout (OR, 13.2; 95% CI: 9.0, 19.2; P = .01) and nonrim arterial phase hyperenhancement (APHE) (OR, 10.3; 95% CI: 6.7, 15.6; P = .01) had stronger associations with HCC than enhancing capsule (OR, 2.4; 95% CI: 1.7, 3.5; P = .03). On CEUS images, APHE (OR, 7.3; 95% CI: 4.6, 11.5; P = .01), late and mild washout (OR, 4.1; 95% CI: 2.6, 6.6; P = .01), and size of at least 20 mm (OR, 1.6; 95% CI: 1.04, 2.5; P = .04) were associated with HCC. Twenty-five studies (78%) had high risk of bias due to reporting ambiguity or study design flaws. Conclusion Most Liver Imaging Reporting and Data System major features had different independent associations with hepatocellular carcinoma; for CT/MRI, arterial phase hyperenhancement and washout had the strongest associations, whereas threshold growth had no association. © RSNA, 2021 Online supplemental material is available for this article

    Potential of essential fatty acid deficiency with extremely low fat diet in lipoprotein lipase deficiency during pregnancy: A case report

    Get PDF
    BACKGROUND: Pregnancy in patients with lipoprotein lipase deficiency is associated with high risk of maternal pancreatitis and fetal death. A very low fat diet (< 10% of calories) is the primary treatment modality for the prevention of acute pancreatitis, a rare but potentially serious complication of severe hypertriglyceridemia. Since pregnancy can exacerbate hypertriglyceridemia in the genetic absence of lipoprotein lipase, a further reduction of dietary fat intake to < 1–2% of total caloric intake may be required during the pregnancy, along with the administration of a fibrate. It is uncertain if essential fatty acid deficiency will develop in the mother and fetus with this extremely low fat diet, or whether fibrates will cross the placenta and concentrate in the fetus. CASE PRESENTATION: A 23 year-old gravida 1 woman with primary lipoprotein lipase deficiency was seen at 7 weeks of gestation in the Lipid Clinic for management of severe hypertriglyceridemia that had worsened with pregnancy. While on her habitual fat intake of 10% of total calories, her pregnancy resulted in an exacerbation of the hypertriglyceridemia, which prompted further restriction of fat intake to < 2% of total calories, as well as administration of gemfibrozil at a lower than average dose. The level of gemfibrozil, as the active metabolite, in the venous and arterial fetal cord blood was within the expected therapeutic range for adults. The clinical signs and a biomarker of essential fatty acid deficiency, namely the ratio of 20:3 [n-9] to 20:4 [n-6] fatty acids, were closely monitored throughout her pregnancy. Despite her extremely low fat diet, the levels of essential fatty acids measured in the mother and in the fetal blood immediately postpartum were normal. Normal essential fatty acid levels may have been achieved by the topical application of sunflower oil. CONCLUSIONS: An extremely low fat diet in combination with topical sunflower oil and gemfibrozil administration was safely implemented in pregnancy associated with the severe hypertriglyceridemia of lipoprotein lipase deficiency

    Comparative effectiveness of Anti-IL5 and Anti-IgE biologic classes in patients with severe asthma eligible for both.

    Get PDF
    BACKGROUND: Patients with severe asthma may present with characteristics representing overlapping phenotypes, making them eligible for more than one class of biologic. Our aim was to describe the profile of adult patients with severe asthma eligible for both anti-IgE and anti-IL5/5R and to compare the effectiveness of both classes of treatment in real life. METHODS: This was a prospective cohort study that included adult patients with severe asthma from 22 countries enrolled into the International Severe Asthma registry (ISAR) who were eligible for both anti-IgE and anti-IL5/5R. The effectiveness of anti-IgE and anti-IL5/5R was compared in a 1:1 matched cohort. Exacerbation rate was the primary effectiveness endpoint. Secondary endpoints included long-term-oral corticosteroid (LTOCS) use, asthma-related emergency room (ER) attendance, and hospital admissions. RESULTS: In the matched analysis (n = 350/group), the mean annualized exacerbation rate decreased by 47.1% in the anti-IL5/5R group and 38.7% in the anti-IgE group. Patients treated with anti-IL5/5R were less likely to experience a future exacerbation (adjusted IRR 0.76; 95% CI 0.64, 0.89; p < 0.001) and experienced a greater reduction in mean LTOCS dose than those treated with anti-IgE (37.44% vs. 20.55% reduction; p = 0.023). There was some evidence to suggest that patients treated with anti-IL5/5R experienced fewer asthma-related hospitalizations (IRR 0.64; 95% CI 0.38, 1.08), but not ER visits (IRR 0.94, 95% CI 0.61, 1.43). CONCLUSIONS: In real life, both anti-IgE and anti-IL5/5R improve asthma outcomes in patients eligible for both biologic classes; however, anti-IL5/5R was superior in terms of reducing asthma exacerbations and LTOCS use

    Magnetic fusion with high energy self-colliding ion beams

    Full text link
    Self-consistent equilibria are obtained for high beta plasma where almost all of the ions are ene with a gyroradius of the order of the plasma scale length. Magnetohydrodynamics would not apply to such a plasma. Recent experiments with tokamaks suggest that it would be insensitive to microinstabilities. Several methods are described for creating the plasma with intense neutralized ion beams

    Optimal Model for Path Loss Predictions using Feed-Forward Neural Networks

    Full text link
    [EN] In this paper, an optimal model is developed for path loss predictions using the Feed-Forward Neural Network (FFNN) algorithm. Drive test measurements were carried out in Canaanland Ota, Nigeria and Ilorin, Nigeria to obtain path loss data at varying distances from 11 different 1,800 MHz base station transmitters. Single-layered FFNNs were trained with normalized terrain profile data (longitude, latitude, elevation, altitude, clutter height) and normalized distances to produce the corresponding path loss values based on the Levenberg-Marquardt algorithm. The number of neurons in the hidden layer was varied (1-50) to determine the Artificial Neural Network (ANN) model with the best prediction accuracy. The performance of the ANN models was evaluated based on different metrics: Mean Absolute error (MAE), Mean Squared Error (MSE), Root Mean Squared Error (RMSE), standard deviation, and regression coefficient (R). Results of the machine learning processes show that the FNN architecture adopting a tangent activation function and 48 hidden neurons produced the least prediction error, with MAE, MSE, RMSE, standard deviation, and R values of 4.21 dB, 30.99 dB, 5.56 dB, 5.56 dB, and 0.89, respectively. Regarding generalization ability, the predictions of the optimal ANN model yielded MAE, MSE, RMSE, standard deviation, and R values of 4.74 dB, 39.38 dB, 6.27 dB, 6.27 dB, and 0.86, respectively, when tested with new data not previously included in the training process. Compared to the Hata, COST 231, ECC-33, and Egli models, the developed ANN model performed better in terms of prediction accuracy and generalization ability.This work was supported by Covenant University [grant number CUCRID-SMARTCU-000343].Popoola, SI.; Adetiba, E.; Atayero, AA.; Faruk, N.; Tavares De Araujo Cesariny Calafate, CM. (2018). Optimal Model for Path Loss Predictions using Feed-Forward Neural Networks. Cogent Engineering. 5:1-19. https://doi.org/10.1080/23311916.2018.1444345S1195Adetiba, E., Iweanya, V. C., Popoola, S. I., Adetiba, J. N., & Menon, C. (2017). Automated detection of heart defects in athletes based on electrocardiography and artificial neural network. Cogent Engineering, 4(1). doi:10.1080/23311916.2017.1411220Adetiba, E., & Olugbara, O. O. (2015). Lung Cancer Prediction Using Neural Network Ensemble with Histogram of Oriented Gradient Genomic Features. The Scientific World Journal, 2015, 1-17. doi:10.1155/2015/786013Adeyemo, Z. K., Ogunremi, O. K., & Ojedokun, I. A. (2016). Optimization of Okumura-Hata Model for Long Term Evolution Network Deployment in Lagos, Nigeria. International Journal on Communications Antenna and Propagation (IRECAP), 6(3), 146. doi:10.15866/irecap.v6i3.9012Akhoondzadeh-Asl, L., & Noori, N. (2007). Modification and Tuning of the Universal Okumura-Hata Model for Radio Wave Propagation Predictions. 2007 Asia-Pacific Microwave Conference. doi:10.1109/apmc.2007.4554925Al Salameh, M. S., & Al-Zu’bi, M. M. (2015). Prediction of radiowave propagation for wireless cellular networks in Jordan.Paper presented at the Knowledge and Smart Technology (KST), 2015 7th International Conference on.Alamoud, M. A., & Schutz, W. (2012). Okumura-hata model tuning for TETRA mobile radio networks in Saudi Arabia. 2012 2nd International Conference on Advances in Computational Tools for Engineering Applications (ACTEA). doi:10.1109/ictea.2012.6462901Armenta, A., Serrano, A., Cabrera, M., & Conte, R. (2011). The new digital divide: the confluence of broadband penetration, sustainable development, technology adoption and community participation. Information Technology for Development, 18(4), 345-353. doi:10.1080/02681102.2011.625925Begovic, P., Behlilovic, N., & Avdic, E. (2012). Applicability evaluation of Okumura, Ericsson 9999 and winner propagation models for coverage planning in 3.5 GHZ WiMAX systems.Erceg, V., Greenstein, L. J., Tjandra, S. Y., Parkoff, S. R., Gupta, A., Kulic, B., 
 Bianchi, R. (1999). An empirically based path loss model for wireless channels in suburban environments. IEEE Journal on Selected Areas in Communications, 17(7), 1205-1211. doi:10.1109/49.778178Farhoud, M., El-Keyi, A., & Sultan, A. (2013). Empirical correction of the Okumura-Hata model for the 900 MHz band in Egypt. 2013 Third International Conference on Communications and Information Technology (ICCIT). doi:10.1109/iccitechnology.2013.6579585Faruk, N., Adediran, Y. A., & Ayeni, A. A. (2013). Error bounds of empirical path loss models at VHF/UHF bands in Kwara State, Nigeria. Eurocon 2013. doi:10.1109/eurocon.2013.6625043Faruk, N., Ayeni, A., & Adediran, Y. A. (2013). ON THE STUDY OF EMPIRICAL PATH LOSS MODELS FOR ACCURATE PREDICTION OF TV SIGNAL FOR SECONDARY USERS. Progress In Electromagnetics Research B, 49, 155-176. doi:10.2528/pierb13011306Hata, M. (1980). Empirical formula for propagation loss in land mobile radio services. IEEE Transactions on Vehicular Technology, 29(3), 317-325. doi:10.1109/t-vt.1980.23859Hufford, G. A. (1952). An integral equation approach to the problem of wave propagation over an irregular surface. Quarterly of Applied Mathematics, 9(4), 391-404. doi:10.1090/qam/44350Ibhaze, A. E., Ajose, S. O., Atayero, A. A.-A., & Idachaba, F. E. (2016). Developing smart cities through optimal wireless mobile network.Paper presented at the emerging technologies and innovative business practices for the transformation of societies (EmergiTech), IEEE international conference on.Luebbers, R. (1984). Propagation prediction for hilly terrain using GTD wedge diffraction. IEEE Transactions on Antennas and Propagation, 32(9), 951-955. doi:10.1109/tap.1984.1143449Matthews, V. O., Osuoyah, Q., Popoola, S. I., Adetiba, E., & Atayero, A. A. (2017, July 5–7). C-BRIG: A network architecture for real-time information exchange in smart and connected campuses. In Lecture notes in engineering and computer science: Proceedings of the world congress on engineering 2017 (pp. 398–401). London.Medeisis, A., & Kajackas, A. (s. f.). On the use of the universal Okumura-Hata propagation prediction model in rural areas. VTC2000-Spring. 2000 IEEE 51st Vehicular Technology Conference Proceedings (Cat. No.00CH37026). doi:10.1109/vetecs.2000.851585Mohtashami, V., & Shishegar, A. A. (2012). Modified wavefront decomposition method for fast and accurate ray-tracing simulation. IET Microwaves, Antennas & Propagation, 6(3), 295. doi:10.1049/iet-map.2011.0264Nimavat, V. D., & Kulkarni, G. (2012). Simulation and performance evaluation of GSM propagation channel under the urban, suburban and rural environments.Paper presented at the communication, information & computing technology (ICCICT), 2012 international conference on.. O. F. O. (2014). RADIO FREQUENCY OPTIMIZATION OF MOBILE NETWORKS IN ABEOKUTA, NIGERIA FOR IMPROVED QUALITY OF SERVICE. International Journal of Research in Engineering and Technology, 03(08), 174-180. doi:10.15623/ijret.2014.0308027Phillips, C., Sicker, D., & Grunwald, D. (2013). A Survey of Wireless Path Loss Prediction and Coverage Mapping Methods. IEEE Communications Surveys & Tutorials, 15(1), 255-270. doi:10.1109/surv.2012.022412.00172Popoola, S. I., Atayero, A. A., Badejo, J. A., John, T. M., Odukoya, J. A., & Omole, D. O. (2018). Learning analytics for smart campus: Data on academic performances of engineering undergraduates in Nigerian private university. Data in Brief, 17, 76-94. doi:10.1016/j.dib.2017.12.059Popoola, S. I., Atayero, A. A., & Faruk, N. (2018). Received signal strength and local terrain profile data for radio network planning and optimization at GSM frequency bands. Data in Brief, 16, 972-981. doi:10.1016/j.dib.2017.12.036Popoola, S. I., Atayero, A. A., Faruk, N., & Badejo, J. A. (2018). Data on the key performance indicators for quality of service of GSM networks in Nigeria. Data in Brief, 16, 914-928. doi:10.1016/j.dib.2017.12.005Popoola, S. I., Atayero, A. A., Faruk, N., Calafate, C. T., Adetiba, E., & Matthews, V. O. (2017, July 5–7). Calibrating the standard path loss model for urban environments using field measurements and geospatial data.Paper presented at the Lecture notes in engineering and computer science: Proceedings of the world congress on engineering 2017 (pp. 513–518). London.Popoola, S. I., Atayero, A. A., Faruk, N., Calafate, C. T., Olawoyin, L. A., & Matthews, V. O. (2017). Standard propagation model tuning for path loss predictions in built-up environments.Paper presented at the International Conference on Computational Science and Its Applications.Popoola, S. I., Atayero, A. A., Okanlawon, T. T., Omopariola, B. I., & Takpor, O. A. (2018). Smart campus: Data on energy consumption in an ICT-driven university. Data in Brief, 16, 780-793. doi:10.1016/j.dib.2017.11.091Popoola, S. I., Badejo, J. A., Ojewande, S. O., & Atayero, A. (2017, October 25–27). Statistical evaluation of quality of service offered by GSM network operators in Nigeria. In Lecture notes in engineering and computer science: Proceedings of the world congress on engineering and computer science 2017 (pp. 69–73). San Francisco.Popoola, S. I., Misra, S., & Atayero, A. A. (2018). Outdoor path loss predictions based on extreme learning machine. Wireless Personal Communications, 1–20.Rath, H. K., Verma, S., Simha, A., & Karandikar, A. (2016). Path Loss model for Indian terrain-empirical approach.Paper presented at the communication (NCC), 2016 twenty second national conference on.Salman, M. A., Popoola, S. I., Faruk, N., Surajudeen-Bakinde, N., Oloyede, A. A., & Olawoyin, L. A. (2017). Adaptive neuro-fuzzy model for path loss prediction in the VHF band.Paper presented at the computing networking and informatics (ICCNI), 2017 international conference on.Schneider, I., Lambrecht, F., & Baier, A. (s. f.). Enhancement of the Okumura-Hata propagation model using detailed morphological and building data. Proceedings of PIMRC ’96 - 7th International Symposium on Personal, Indoor, and Mobile Communications. doi:10.1109/pimrc.1996.567508Sotiroudis, S. P., & Siakavara, K. (2015). Mobile radio propagation path loss prediction using Artificial Neural Networks with optimal input information for urban environments. AEU - International Journal of Electronics and Communications, 69(10), 1453-1463. doi:10.1016/j.aeue.2015.06.014Zelley, C. A., & Constantinou, C. C. (1999). A three-dimensional parabolic equation applied to VHF/UHF propagation over irregular terrain. IEEE Transactions on Antennas and Propagation, 47(10), 1586-1596. doi:10.1109/8.80590
    • 

    corecore