Molecular identification of diarrheal Aeromonas using immuno magnetic polymerase chain reaction (IM-PCR) technique: a comparative study with conventional culture method

Background: Aeromonas are ubiquitous bacteria causing many clinical conditions including acute diarrhea. Diarrheagenic Aeromonas harbors aerolysin gene secreting virulent enterotoxin, aerolysin.Objectives: To develop a molecular and immunological based method for detection of Aeromonas.Methods: Diarrheal Aeromonas strains were identified from stool samples using culture, enterotoxicity testing using mice model. During immune magnetic polymerase chain reaction IM-PCR protocol, aerolysin specific antibodies were bound with immuno magnetic binding. Sensitivity and specificity tests for IM-PCR were conducted.Results: There was high detection of Aeromonas using IM-PCR (12.4 %) technique when compared to low isolation with culture (5.1%). Our study confirmed that some strains of enterotoxic Aeromonas strains were uncultivable. Enterotoxicity tests on culture isolates revealed many strains were negative. IM-PCR detected high, (62/500) rate of identification of Aeromonas with aerolysin toxin gene. Aeromonas species identified after IM-PCR were A. hydrophila (40.3% ), A. veronii (17.7 %), A. caviae (14.5%), A. trota (11.2 %), A. jandei (9.6 %) and A. schuberti (6.4%). All A. trota strains were undetected by cultivation.Conclusion: High sensitivity and specificity of IM-PCR are due to preparation of aerolysin antibodies and immuno magnetic binding, prior to PCR. Since diseases due to Aeromonas are increasingly reported, IM-PCR is recommended for detection from clinical specimens.Keywords: Aeromonas, IM-PCR, acute diarrhea, aerolysin, enterotoxicity

Evaluation of pharmacokinetics of warfarin from validated pharmacokinetic-pharmacodynamic model

Background: Pharmacokinetics of warfarin has not been described in our population. We derived the pharmacokinetic parameters from a validated pharmacokinetic-pharmacodynamic model. Methods: Patients receiving warfarin for at least 6 months were recruited and their demographic characteristics, prothrombin time international normalized ratio (PT-INR), warfarin doses and concomitant drugs were collected. Using a validated pharmacokinetic-pharmacodynamic model, we predicted maximum plasma concentration (Cmax), total clearance (CL), volume of distribution (Vd) and elimination rate (k). Warfarin sensitive index (WSI) and warfarin composite measures (WCM) were estimated from the dose and INR values. Liver weight was predicted using validated formula. Results: Two-hundred and twenty patients were recruited. The following were the predicted pharmacokinetic parameters: Cmax (mg/L) was 5.8 (0.4); k (L/day) was 1 (0.1); CL (L/day) was 2.1 (0.2); and Vd (L) was 7.6 (0.2). Patients with Cmax and elimination rate outside the mean+1.96 SD had significantly lower WSI and higher WCM. Significant correlations were observed between Cmax with CL, Vd, and k of warfarin. Significant correlations were also observed between CL and Vd of warfarin with liver weight of the study participants. Conclusion: We predicted pharmacokinetic parameters of warfarin from the validated pharmacokinetic-pharmacodynamic model in our population. More studies are needed exploring the relationship between various pharmacodynamic indices of warfarin and pharmacokinetic parameters of warfarin

Computer Simulation of Catalytic Oxidation of Gaseous Ammonia in Bubbling Fluidized Bed

Catalytic conversion of ammonia in bubbling fluidized bed has been simulated using three different hydrodynamic models: (a) Kunii and Levenspiel model, (b) Simple two-phase model, and (c) Dynamic two-phase model. The basic differences between the models lie in the assumptions and mass transfer correlations used to describe the hydrodynamics of the fluidized bed. This study compares the predictions of the performance of a fluidized bed reactor by different models, comparing with experimental data of ammonia oxidation using metal oxide catalysts. The predictions from all the models compared well with the experimental data within acceptable levels of error. The variations among the models were found to be insignificant. However, simulation of the model to assess the effect of different hydrodynamic parameters, including gas velocity, bed diameter and particle size, and bed density on conversion showed significant variation among the models

Sero-surveillance and risk factors for avian influenza and Newcastle disease virus in backyard poultry in Oman

AbstractAvian Influenza (AI) and Newcastle disease (ND) are the most important reportable poultry diseases worldwide. Low pathogenic AI (H9N2) and ND viruses are known to have been circulating in the Middle East, including in Oman, for many decades. However, detailed information on the occurrence of these pathogens is almost completely lacking in Oman. As backyard poultry are not vaccinated against either virus in Oman, this sector is likely to be the most affected poultry production sector for both diseases. Here, in the first survey of AI and ND viruses in backyard poultry in Oman, we report high flock-level seroprevalences of both viruses. Serum and oropharyngeal swabs were taken from 2350 birds in 243 backyard flocks from all regions and governorates of Oman. Information was recorded on location, type of bird and housing type for each sampled farm. Individual bird serum samples were tested using commercial indirect antibody detection ELISA kits. Pooled oropharyngeal samples from each flock were inoculated onto FTA cards and tested by RT-PCR. Samples came from chickens (90.5%), turkeys (2.1%), ducks (6.2%), guinea fowl (0.8%) and geese (0.4%). The bird-level seroprevalence of antibody to AI and ND viruses was 37.5% and 42.1% respectively, and at the flock level it was 84% and 90% respectively. There were statistically significant differences between some different regions of Oman in the seroprevalence of both viruses. Flock-level NDV seropositivity in chickens was significantly associated with AIV seropositivity, and marginally negatively associated with flock size. AIV seropositivity in chickens was marginally negatively associated with altitude. All oropharyngeal samples were negative for both viruses by RT-PCR, consistent with a short duration of infection. This study demonstrates that eight or nine out of ten backyard poultry flocks in Oman are exposed to AI and ND viruses, and may present a risk for infection for the commercial poultry sector in Oman, or wild birds which could carry infection further afield

Gasification conversion and char reactivity of rubber seed shell and high density polyethylene mixtures using steam Co-Gasification process

Due to the recent surge of global energy demand and the fear of climate change, an extensive attention from worldwide in seeking for cleaner alternative means of renewable energy and this has been a topic of interest widely. With the abundance supply of biomass and plastic waste generated annually and finding an effective method in utilizing these wastes, leads to a notion of using these wastes in the co-gasification process. Although there are studies on co-gasification of biomass and waste mixtures, limited studies focused on the understanding of the char reactivity and gasification conversion of this mixture. Hence, an experimental study on steam co-gasification of rubber seed shell and high density polyethylene mixtures in argon atmosphere is carried out using thermogravimetric (TGA) approach under non-isothermal condition. This work presents the surface physical morphology of rubber seed shell (RSS), high density polyethylene (HDPE), and its mixtures. Furthermore, the char conversion and char reactivity of RSS, HDPE, and their mixtures at different proportions are investigated in both pyrolysis and gasification process. The argon gas is supplied at a flowrate of 100 mL min-1and the steam is generated from superheater at 383 K whilst injected at flowrate of 3000 µL h-1into the TGA system

Improving the Effectiveness of Information Retrieval System Using Adaptive Genetic Algorithm

ABSTRACT Traditional Genetic Algorithm which is used in previous studies depends on fixed control parameters especially crossover and mutation probabilities, but in this research we tried to use adaptive genetic algorithm. Genetic algorithm started to be applied in information retrieval system in order to optimize the query by genetic algorithm, a good query is a set of terms that express accurately the information need while being usable within collection corpus, the last part of this specification is critical for the matching process to be efficient, that is why most research efforts are actually put toward the query improvement. (IR), the algorithm used crossover and mutation operators with variable probability, where a traditional genetic algorithm (GA) uses fixed values of those, and remain unchanged during execution. GA is developed to support adaptive adjustment of mutation and crossover probability; this allows faster attainment of better solutions. The paper has been tested using 242 Arabic abstracts collected from the proceedings of the Saudi Arabian National conference. We investigated the use of adaptive genetic algorithm (AGA) under vector space model, Extended Boolean model, and Language model in information retrieva

Sensitivity, specificity of biochemical markers for early prediction of endothelial dysfunction in atherosclerotic obese subjects

Background: The obesity increased incidence of diabetes, hypertension and atherosclerosis and rate of morbidity and mortality. The main cause of atherosclerosis is endothelial dysfunction and formation of foam cells and macrophage that lead to unfavorable complications. This study evaluated specific biomarkers for endothelial dysfunction as sensitive indices for early predication of atherosclerosis in obese subjects. Study Design: One hundred fifty male age and sex matching were included in the current study divided into three groups according to body mass index (BMI): Control (BMI ≤ 22), obese (BMI> 28) and obese with atherosclerosis (BMI> 28). Fasting serum was subjected for determination of adhesion molecules, sICAM-1, sVCAM-1, E-selectin, oxo-LDL and 8-iso-PGF2α by ELISA technique. Results: Data obtained showed that, a significant elevation of serum inflammatory markers CRP, IL-6 and TNF-α and adhesion molecules sICAM-1 (p<0.001) with sensitivity 96%, sVCAM-1 (p <0.01) with sensitivity 92%, E-selectin (p<0.001) with sensitivity 94%, oxo-LDL (p <0.05) and 8-iso-PGF2α (p < 0.001) with sensitivity 97% in obese with atherosclerosis compared with obese and control. Conclusion: The levels of serum adhesion molecules contributed in the pathogenesis of endothelial dysfunction can be used as sensitive biomarkers for early prediction of atherosclerosis in obese subjects. Keywords: Obesity; atherosclerosis; endothelial dysfunction

Considerations about multistep community detection

The problem and implications of community detection in networks have raised a huge attention, for its important applications in both natural and social sciences. A number of algorithms has been developed to solve this problem, addressing either speed optimization or the quality of the partitions calculated. In this paper we propose a multi-step procedure bridging the fastest, but less accurate algorithms (coarse clustering), with the slowest, most effective ones (refinement). By adopting heuristic ranking of the nodes, and classifying a fraction of them as `critical', a refinement step can be restricted to this subset of the network, thus saving computational time. Preliminary numerical results are discussed, showing improvement of the final partition.Comment: 12 page

Evaluation of protection and immunity induced by infectious bronchitis vaccines administered by oculonasal, spray or gel routes in commercial broiler chicks.

Broiler chicks' responses following combined IBV live attenuated Massachusetts and 793B strains through gel, spray or oculonasal (ON) vaccination routes were cross-compared. Subsequently, the responses following IBV M41 challenge of the unvaccinated and vaccinated groups were also assessed. Post-vaccination humoral and mucosal immune responses, alongside viral load kinetics in swabs and tissues, were determined using commercial ELISA assays, monoclonal antibody-based IgG and IgA ELISA assays and qRT-PCR respectively. After challenged with IBV-M41 strain, humoral and mucosal immune responses, ciliary protection, viral load kinetics, and immune gene mRNA transcriptions between the three vaccination methods were examined and compared. Findings showed that post-vaccinal humoral and mucosal immune responses were similar in all three vaccination methods. Post vaccinal viral load kinetics is influenced by method of administration. The viral load peaked in the ON group within the tissues and the OP/CL swabs in the first and third weeks respectively. Following M41 challenge, ciliary protection and mucosal immune responses were not influenced by vaccination methods as all three methods offered equal ciliary protection. Immune gene mRNA transcriptions varied by vaccination methods. Significant up-regulation of MDA5, TLR3, IL-6, IFN-α and IFN-β genes were recorded for ON method. For both spray and gel methods, significant up-regulation of only MDA5 and IL-6 genes were noted. The spray and gel-based vaccination methods gave equivalent levels of ciliary protection and mucosal immunity to M41 virulent challenge comparable to those provided by the ON vaccination. Analysis of viral load and patterns of immune gene transcription of the vaccinated-challenged groups revealed high similarity between turbinate and choanal cleft tissues compared to HG and trachea. With regards to immune gene mRNA transcription, for all the vaccinated-challenged groups, similar results were found except for IFN-α, IFN-β and TLR3, which were up-regulated only in ON compared to gel and spray vaccination methods