B cells do not take up bacterial DNA: An essential role for antigen in exposure of DNA to toll-like receptor-9

Murine dendritic cells (DC) and macrophages respond to bacterial CpG DNA through toll-like receptor 9 (TLR9). Although it is frequently assumed that bacterial DNA is a direct stimulus for B cells, published work does not reliably show responses of purified B cells. Here we show that purified splenic B cells did not respond to Escherichia coli DNA with induction of CD86, despite readily responding to single-stranded (ss) phosphodiester CpG oligodeoxynucleotides (ODN). This was due to a combination of weak responses to both long and double-stranded (ds) DNA. B-cell DNA uptake was greatly reduced with increasing DNA length. This contrasts with macrophages where DNA uptake and subsequent responses were enhanced with increasing DNA length. However, when DNA was physically linked to hen egg lysozyme (HEL), HEL-specific B cells showed efficient uptake of DNA, and limited proliferation in response to the HEL-DNA complex. We propose that, in the absence of other signals, B cells have poor uptake and responses to long dsDNA to prevent polyclonal activation. Conversely, when DNA is physically linked to a B-cell receptor (BCR) ligand, its uptake is increased, allowing TLR9-dependent B-cell activation in an antigen-specific manner. We could not generate fragments of E. coli DNA by limited DNaseI digestion that could mimic the stimulatory effect of ss CpG ODN on naive B cells. We suggest that the frequently studied polyclonal B-cell responses to CpG ODN are relevant to therapeutic applications of phosphorothioate-modified CpG-containing ODN, but not to natural responses to foreign or host dsDNA. Immunology and Cell Biology (2011) 89, 517-525; doi:10.1038/icb.2010.112; published online 5 October 201

Variability of Low-ionization Broad Absorption Line Quasars Based on Multi-epoch Spectra from The Sloan Digital Sky Survey

We present absorption variability results for 134 bona fide \mgii\ broad absorption line (BAL) quasars at 0.46~$\lesssim z \lesssim$~2.3 covering days to $\sim$ 10 yr in the rest frame. We use multiple-epoch spectra from the Sloan Digital Sky Survey, which has delivered the largest such BAL-variability sample ever studied. \mgii-BAL identifications and related measurements are compiled and presented in a catalog. We find a remarkable time-dependent asymmetry in EW variation from the sample, such that weakening troughs outnumber strengthening troughs, the first report of such a phenomenon in BAL variability. Our investigations of the sample further reveal that (i) the frequency of BAL variability is significantly lower (typically by a factor of 2) than that from high-ionization BALQSO samples; (ii) \mgii\ BAL absorbers tend to have relatively high optical depths and small covering factors along our line of sight; (iii) there is no significant EW-variability correlation between \mgii\ troughs at different velocities in the same quasar; and (iv) the EW-variability correlation between \mgii\ and \aliii\ BALs is significantly stronger than that between \mgii\ and \civ\ BALs at the same velocities. These observational results can be explained by a combined transverse-motion/ionization-change scenario, where transverse motions likely dominate the strengthening BALs while ionization changes and/or other mechanisms dominate the weakening BALs.Comment: 24 pages, accepted for publication in ApJ

A New Biometric Template Protection using Random Orthonormal Projection and Fuzzy Commitment

Biometric template protection is one of most essential parts in putting a biometric-based authentication system into practice. There have been many researches proposing different solutions to secure biometric templates of users. They can be categorized into two approaches: feature transformation and biometric cryptosystem. However, no one single template protection approach can satisfy all the requirements of a secure biometric-based authentication system. In this work, we will propose a novel hybrid biometric template protection which takes benefits of both approaches while preventing their limitations. The experiments demonstrate that the performance of the system can be maintained with the support of a new random orthonormal project technique, which reduces the computational complexity while preserving the accuracy. Meanwhile, the security of biometric templates is guaranteed by employing fuzzy commitment protocol.Comment: 11 pages, 6 figures, accepted for IMCOM 201

Broad absorption line disappearance/emergence in multiple ions in a weak emission-line quasar

We report the discovery of disappearance of Mg ii, Al iii, C iv, and Si iv broad absorption lines (BALs) at the same velocity, accompanied by a new Civ BAL emerging at a higher velocity, in the quasar J0827+4252 at z = 2.038. This is the first report of BAL disappearance (i) over Mg ii, Al iii, C iv, and Si iv ions and (ii) in a weak emission-line quasar (WLQ). The discovery is based on four spectra from the SDSS and one follow-up spectrum from HET/LRS2. The simultaneous Civ BAL disappearance and emergence at different velocities, together with no variations in the CRTS light curve, indicate that ionization changes in the absorbing material are unlikely to cause the observed BAL variability. Our analyses reveal that transverse motion is the most likely dominant driver of the BAL disappearance/emergence. Given the presence of mildly relativistic BAL outflows and an apparently large C iv emission-line blueshift that is likely associated with strong bulk outflows in this WLQ, J0827+4252 provides a notable opportunity to study extreme quasar winds and their potential in expelling material from inner to large-scale regions.Comment: Published in 2019 ApJL, 870,

30 inch Roll-Based Production of High-Quality Graphene Films for Flexible Transparent Electrodes

We report that 30-inch scale multiple roll-to-roll transfer and wet chemical doping considerably enhance the electrical properties of the graphene films grown on roll-type Cu substrates by chemical vapor deposition. The resulting graphene films shows a sheet resistance as low as ~30 Ohm/sq at ~90 % transparency which is superior to commercial transparent electrodes such as indium tin oxides (ITO). The monolayer of graphene shows sheet resistances as low as ~125 Ohm/sq with 97.4% optical transmittance and half-integer quantum Hall effect, indicating the high-quality of these graphene films. As a practical application, we also fabricated a touch screen panel device based on the graphene transparent electrodes, showing extraordinary mechanical and electrical performances

Novel role for the innate immune receptor toll-like receptor 4 (TLR4) in the regulation of the wnt signaling pathway and photoreceptor apoptosis

Recent evidence has implicated innate immunity in regulating neuronal survival in the brain during stroke and other neurodegenerations. Photoreceptors are specialized light-detecting neurons in the retina that are essential for vision. In this study, we investigated the role of the innate immunity receptor TLR4 in photoreceptors. TLR4 activation by lipopolysaccharide (LPS) significantly reduced the survival of cultured mouse photoreceptors exposed to oxidative stress. With respect to mechanism, TLR4 suppressed Wnt signaling, decreased phosphorylation and activation of the Wnt receptor LRP6, and blocked the protective effect of the Wnt3a ligand. Paradoxically, TLR4 activation prior to oxidative injury protected photoreceptors, in a phenomenon known as preconditioning. Expression of TNFα and its receptors TNFR1 and TNFR2 decreased during preconditioning, and preconditioning was mimicked by TNFα antagonists, but was independent of Wnt signaling. Therefore, TLR4 is a novel regulator of photoreceptor survival that acts through the Wnt and TNFα pathways. © 2012 Yi et al

Phase Transitions and Their Interaction with Dislocations in Silicon

In this paper, phase transformations (PTs) in silicon were investigated through molecular dynamics (MD) using Tersoff potential. In the first step, simulations of PTs in single crystal silicon under various stress-controlled loading were carried out. Results shows that all instability points under various stress states are described by criteria, which are linear in the space of normal stresses. There is a region in the stress space in which conditions for direct and reverse PTs coincide and a unique homogeneous phase transition (without nucleation) can be realized. Finally, phase transition in bi-crystalline silicon with a dislocation pileup along the grain boundary (GB) was carried out. Results showed that the phase transition pressure first decreases linearly with the number of dislocation pileups and then reaches a plateau with the accumulation of dislocations in the pileup. The maximum reduction of phase transition pressure is 30% compared to that for perfect single crystalline silicon

Identification of the Inorganic Pyrophosphate Metabolizing, ATP Substituting Pathway in Mammalian Spermatozoa

Inorganic pyrophosphate (PPi) is generated by ATP hydrolysis in the cells and also present in extracellular matrix, cartilage and bodily fluids. Fueling an alternative pathway for energy production in cells, PPi is hydrolyzed by inorganic pyrophosphatase (PPA1) in a highly exergonic reaction that can under certain conditions substitute for ATP-derived energy. Recombinant PPA1 is used for energy-regeneration in the cell-free systems used to study the zymology of ATP-dependent ubiquitin-proteasome system, including the role of sperm-borne proteasomes in mammalian fertilization. Inspired by an observation of reduced in vitro fertilization (IVF) rates in the presence of external, recombinant PPA1, this study reveals, for the first time, the presence of PPi, PPA1 and PPi transporter, progressive ankylosis protein ANKH in mammalian spermatozoa. Addition of PPi during porcine IVF increased fertilization rates significantly and in a dose-dependent manner. Fluorometric assay detected high levels of PPi in porcine seminal plasma, oviductal fluid and spermatozoa. Immunofluorescence detected PPA1 in the postacrosomal sheath (PAS) and connecting piece of boar spermatozoa; ANKH was present in the sperm head PAS and equatorial segment. Both ANKH and PPA1 were also detected in human and mouse spermatozoa, and in porcine spermatids. Higher proteasomal-proteolytic activity, indispensable for fertilization, was measured in spermatozoa preserved with PPi. The identification of an alternative, PPi dependent pathway for ATP production in spermatozoa elevates our understanding of sperm physiology and sets the stage for the improvement of semen extenders, storage media and IVF media for animal biotechnology and human assisted reproductive therapies

Molecular characterization of porcine circovirus 2 isolated from diseased pigs co-infected with porcine reproductive and respiratory syndrome virus

In this study, we isolated a porcine circovirus 2 (PCV2) strain from piglets co-infected with porcine reproductive and respiratory syndrome virus (PRRSV). The complete genome of this strain was sequenced, phylogenetic and polymorphic analyses were carried out. BLAST searches revealed the highest sequence identity (99.5% nt and 99.3% aa) to Guangxi strain EF675230. The phylogenetic tree showed that clustering of the isolates didn't strongly correlate to geographical distribution. Polymorphic analyses demonstrated that the amino acids at most of the polymorphic sites in Open Reading Frame 1(ORF1) and 2 (ORF2)belong to the same amino acid group according to chemical or structural properties, and revealed that highly polymorphic regions overlapped with the known immunoreactive epitopes of ORF2