83 research outputs found
Exawatt-Zettawatt Pulse Generation and Applications
A new amplification method, weaving the three basic compression techniques,
Chirped Pulse Amplification (CPA), Optical Parametric Chirped Pulse
Amplification (OPCPA) and Plasma Compression by Backward Raman Amplification
(BRA) in plasma, is proposed. It is called C3 for Cascaded Conversion
Compression. It has the capability to compress with good efficiency kilojoule
to megajoule, nanosecond laser pulses into femtosecond pulses, to produce
exawatt and beyond peak power. In the future, C3 could be used at large-scale
facilities such as the National Ignition Facility (NIF) or the Laser Megajoule
(LMJ) and open the way to zettawatt level pulses. The beam will be focused to a
wavelength spot size with a f#1. The very small beam size, i.e. few
centimeters, along with the low laser repetition rate laser system will make
possible the use of inexpensive, precision, disposable optics. The resulting
intensity will approach the Schwinger value, thus opening up new possibilities
in fundamental physics.Comment: 13 pages, 4 figure
Processed pseudogenes acquired somatically during cancer development.
Cancer evolves by mutation, with somatic reactivation of retrotransposons being one such mutational process. Germline retrotransposition can cause processed pseudogenes, but whether this occurs somatically has not been evaluated. Here we screen sequencing data from 660 cancer samples for somatically acquired pseudogenes. We find 42 events in 17 samples, especially non-small cell lung cancer (5/27) and colorectal cancer (2/11). Genomic features mirror those of germline LINE element retrotranspositions, with frequent target-site duplications (67%), consensus TTTTAA sites at insertion points, inverted rearrangements (21%), 5' truncation (74%) and polyA tails (88%). Transcriptional consequences include expression of pseudogenes from UTRs or introns of target genes. In addition, a somatic pseudogene that integrated into the promoter and first exon of the tumour suppressor gene, MGA, abrogated expression from that allele. Thus, formation of processed pseudogenes represents a new class of mutation occurring during cancer development, with potentially diverse functional consequences depending on genomic context
TERT promoter mutations are highly recurrent in SHH subgroup medulloblastoma
Telomerase reverse transcriptase (TERT) promoter mutations were recently shown to drive telomerase activity in various cancer types, including medulloblastoma. However, the clinical and biological implications of TERT mutations in medulloblastoma have not been described. Hence, we sought to describe these mutations and their impact in a subgroup-specific manner. We analyzed the TERT promoter by direct sequencing and genotyping in 466 medulloblastomas. The mutational distributions were determined according to subgroup affiliation, demographics, and clinical, prognostic, and molecular features. Integrated genomics approaches were used to identify specific somatic copy number alterations in TERT promoter-mutated and wild-type tumors. Overall, TERT promoter mutations were identified in 21 % of medulloblastomas. Strikingly, the highest frequencies of TERT mutations were observed in SHH (83 %; 55/66) and WNT (31 %; 4/13) medulloblastomas derived from adult patients. Group 3 and Group 4 harbored this alteration in <5 % of cases and showed no association wit
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