Accelerator Design for the CHESS-U Upgrade

During the summer and fall of 2018 the Cornell High Energy Synchrotron Source (CHESS) is undergoing an upgrade to increase high-energy flux for x-ray users. The upgrade requires replacing one-sixth of the Cornell Electron Storage Ring (CESR), inverting the polarity of half of the CHESS beam lines, and switching to single-beam on-axis operation. The new sextant is comprised of six double-bend achromats (DBAs) with combined-function dipole-quadrupoles. Although the DBA design is widely utilized and well understood, the constraints for the CESR modifications make the CHESS-U lattice unique. This paper describes the design objectives, constraints, and implementation for the CESR accelerator upgrade for CHESS-U

On steadyness of stereotypes in conceptions on marine ecology of pacific salmons (Oncorhynchus spp.)

Some conceptions on marine ecology of pacific salmons (Oncorhynchus spp.), established in the second half of the last century, are discussed from critical position, as overemphasizing of the sea surface temperature influence on distribution of salmons and formation of their year-classes strength, deficiency of food (particularly in winter time) and fierce competition for food, pink salmon «suppression» over other salmon species and own adjacent generations, limited carrying capacity of the Subarctic zone for salmons, distortion of the epipelagic communities structure in the North Pacific by mass artificial reproduction of chum salmon, etc. Most of these ideas have not been confirmed by the data of long-term monitoring in complex marine expeditions conducted by Pacific Fish. Res. Center (TINRO) in the Far-Eastern Seas and adjacent North Pacific waters since the 1980s till nowadays. The data show that pacific salmons are very ecologically plastic species with wide temperature range of habitat. Salmons are able to considerable vertical migrations crossing easily the temperature gradient zones and different water masses. They have wide feeding spectra. Migrating dispersed, they successfully get their ration, even in vast areas with relatively low concentration of prey (macroplankton and small nekton). Total biomass of all species of pacific salmons in the North Pacific does not exceed 4-5 million tons (1.5-2.0 million tons in the Russian waters), whereas the stocks of other mass species of nekton are hundreds of millions of tons. The salmons consume 1.0-5.0 % of the total consumption by nekton in the epipelagic layer in the western Bering Sea, 0.5-1.0 % in the Okhotsk Sea, 5.0-15.0 % at East Kamchatka, and less than 1 % in the Pacific waters at Kuril Islands, So, the role of pacific salmons in trophic nets of the Subarctic waters is rather moderate. Therefore, neither pink salmon, nor chum salmon can be seriously considered as the species responsible for reorganization of large ecosystems and fluctuating of other mass nekton species

Experimental Demonstration of Compensation of Beam-Beam Effects by Electron Lenses

We report the first experimental demonstration of compensation of beam-beam interaction effects in high-energy particle collider by using space-charge forces of a low-energy electron beam. In our experiments, an electron lens, a novel instrument developed for the beam-beam compensation, was set on a 980-GeV proton bunch in the Tevatron proton-antiproton collider. The proton bunch losses due to its interaction with antiproton beam were reduced by a factor of 2 when the electron lens was operating. We describe the principle of electron lens operation and present experimental results.Comment: submitted to Physical Review Letters, April 2, 2007. submitted to Physical Review Letters, April 2, 200

Observation of the Dynamic Beta Effect at CESR with CLEO

Using the silicon strip detector of the CLEO experiment operating at the Cornell Electron-positron Storage Ring (CESR), we have observed that the horizontal size of the luminous region decreases in the presence of the beam-beam interaction from what is expected without the beam-beam interaction. The dependence on the bunch current agrees with the prediction of the dynamic beta effect. This is the first direct observation of the effect.Comment: 9 page uuencoded postscript file, postscritp file also available through http://w4.lns.cornell.edu/public/CLNS, submitted to Phys. Rev.

Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.

The whole genome of Jatropha curcas was sequenced, using a combination of the conventional Sanger method and new-generation multiplex sequencing methods. Total length of the non-redundant sequences thus obtained was 285 858 490 bp consisting of 120 586 contigs and 29 831 singlets. They accounted for ∼95% of the gene-containing regions with the average G + C content was 34.3%. A total of 40 929 complete and partial structures of protein encoding genes have been deduced. Comparison with genes of other plant species indicated that 1529 (4%) of the putative protein-encoding genes are specific to the Euphorbiaceae family. A high degree of microsynteny was observed with the genome of castor bean and, to a lesser extent, with those of soybean and Arabidopsis thaliana. In parallel with genome sequencing, cDNAs derived from leaf and callus tissues were subjected to pyrosequencing, and a total of 21 225 unigene data have been generated. Polymorphism analysis using microsatellite markers developed from the genomic sequence data obtained was performed with 12 J. curcas lines collected from various parts of the world to estimate their genetic diversity. The genomic sequence and accompanying information presented here are expected to serve as valuable resources for the acceleration of fundamental and applied research with J. curcas, especially in the fields of environment-related research such as biofuel production. Further information on the genomic sequences and DNA markers is available at http://www.kazusa.or.jp/jatropha/

Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa

Background The Multinational Brassica rapa Genome Sequencing Project (BrGSP) has developed valuable genomic resources, including BAC libraries, BAC-end sequences, genetic and physical maps, and seed BAC sequences for Brassica rapa. An integrated linkage map between the amphidiploid B. napus and diploid B. rapa will facilitate the rapid transfer of these valuable resources from B. rapa to B. napus (Oilseed rape, Canola). Results In this study, we identified over 23,000 simple sequence repeats (SSRs) from 536 sequenced BACs. 890 SSR markers (designated as BrGMS) were developed and used for the construction of an integrated linkage map for the A genome in B. rapa and B. napus. Two hundred and nineteen BrGMS markers were integrated to an existing B. napus linkage map (BnaNZDH). Among these mapped BrGMS markers, 168 were only distributed on the A genome linkage groups (LGs), 18 distrubuted both on the A and C genome LGs, and 33 only distributed on the C genome LGs. Most of the A genome LGs in B. napus were collinear with the homoeologous LGs in B. rapa, although minor inversions or rearrangements occurred on A2 and A9. The mapping of these BAC-specific SSR markers enabled assignment of 161 sequenced B. rapa BACs, as well as the associated BAC contigs to the A genome LGs of B. napus. Conclusion The genetic mapping of SSR markers derived from sequenced BACs in B. rapa enabled direct links to be established between the B. napus linkage map and a B. rapa physical map, and thus the assignment of B. rapa BACs and the associated BAC contigs to the B. napus linkage map. This integrated genetic linkage map will facilitate exploitation of the B. rapa annotated genomic resources for gene tagging and map-based cloning in B. napus, and for comparative analysis of the A genome within Brassica species