Additional file 9: Figure S5. of Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

MAF distribution for SNVs in the 1000 Genomes Project but not in this study. (DOCX 49 kb

Additional file 3: Figure S2. of Alcohol consumption and breast tumor gene expression

Differentially expressed probes (N = 25,979) by alcohol consumption in the NHS and the NHSII. The top four figures show recent alcohol intake > 0 - < 10 vs. 0 g/day and the bottom four figures show recent alcohol intake 10+ vs. 0 g/day. (PDF 1418 kb

Additional file 2: Table S1. of Alcohol consumption and breast tumor gene expression

Comparison of study population characteristics in the NHS/NHSII and TCGA. Table S2. Characteristics of invasive breast cancer cases by recent alcohol consumption in the TCGA. Table S3. Top 10 ranked differentially expressed probes by recent alcohol consumption in the NHS and the NHSII. Table S4. Enriched gene sets (FDR 0.05–0.1) by recent alcohol consumption in ER+ tumors in the NHS and the NHSII. Table S5. Enriched gene sets (FDR 0.05–0.1) by recent alcohol consumption in ER- tumors in the NHS and the NHSII. Table S6. Enriched gene sets by alcohol consumption in stage II/III ER+ tumors in the NHS and the NHSII. (DOCX 56 kb

Additional file 3: Figure S2. of Alcohol consumption and breast tumor gene expression

Differentially expressed probes (N = 25,979) by alcohol consumption in the NHS and the NHSII. The top four figures show recent alcohol intake > 0 - < 10 vs. 0 g/day and the bottom four figures show recent alcohol intake 10+ vs. 0 g/day. (PDF 1418 kb

Additional file 1: Figure S1. of Alcohol consumption and breast tumor gene expression

ESR1, PGR, ERBB2 mRNA expression by IHC ER, PR, and HER2, respectively, in the NHS and the NHSII. (PDF 273 kb