Investigating the mechanical behaviour at a core-sheath interface in peripheral nerves

Published without an abstract

Force transmission across a core-sheath interface in peripheral nerves [poster presentation]

No abstract - poster presentation

A review of knowledge: inter-row hoeing & its associated agronomy in organic cereal & pulse crops

The aim of this project was to establish the “state of the art” for inter-row hoeing and its associated agronomic practices in organic cereal and pulse crops. To achieve this a detailed review of literature was undertaken. • To facilitate inter-row cultivation in cereal and pulse crops, some adjustment of row spacing may be required. For cereals, drilling crops in 25 cm rows can reduce yield compared with normal drilling practice, primarily due to greater intra-specific competition amongst the crop (i.e. competition between crop plants). • The yield penalty resulting from widely spaced crop rows can be minimised using a number of approaches, depending on the drill: 1. Reducing the seed rate in widely spaced crop rows can help to minimise excessive intra-specific competition. 2. Band sowing the crop in wide rows can also help to minimise intra-specific competition as the seed is distributed over a greater area. 3. Using a twin-row arrangement can completely overcome the yield penalty. • The recommended row spacing for peas (up to 20 cm) and beans (up to 35 cm) does not require any further adjustment for inter-row hoeing. • Recent developments in automated guidance of inter-row hoeing equipment mean that weeding operations can now be conducted a much higher speeds (10 km h-1). This has highlighted the limitations of some of the cultivators currently used (e.g. ‘A’ blades), as excessive soil throw can occur at this high speed. Rolling cultivators may prove to be the most suitable at high forward speeds. For manually guided hoes working at slower speeds (5 km h-1), ‘A’ and ‘L’ blades offer an effective low cost solution. • In terms of the timing of inter-row hoeing, it is suggested that weeding operations should be conducted at an early stage in the growing season, as the weeds that emerge with or shortly after the crop are the ones that pose the most significant threat for crop yield. Weeding on two occasions can provide better levels of weed control than weeding once, but weeding more frequently offered little additional benefit. Reductions of weed biomass of up to 99 % have been reported as a result of inter-row hoeing, although this has not always resulted in a positive crop yield response. This is probably due to crop damage resulting from inaccurate hoeing, a problem that can be overcome with automated guidance. • There is some evidence to suggest that mechanical weeding operations can mineralise soil bound nitrogen. • The impact of inter-row hoeing on ground nesting birds is uncertain. Early indications suggest that skylarks prefer to nest directly adjacent to or in the crop row rather than between rows. The information contained within this review should enable farmers to make best use of inter-row hoeing in their arable crops. There are a number of areas that require further research and development: • The interaction of seed rate and row spacing needs to be confirmed in organic systems. • Relatively little is known about the mechanisms of weed kill and the detailed interaction between the cultivator blade, the weed and the soil. This is particularly important with the new automated guidance equipment that allows weeding at high forward speeds. • The timing and frequency of inter-row hoeing has received very little attention. The optimum weed control timings are based on small-plot crop:weed competition studies and need to be verified under field scale management with inter-row hoeing equipment. • Finally, the impact of inter-row hoeing and widely spaced crop rows on ground-nesting birds has not been looked at directly, but is of importance. Please see the main report for a more detailed summary before the full text

Imaging With the Past: Revealing the Complexity of Chimaeroid Pelvic Musculature Anatomy and Development

Chondrichthyans are now widely adopted as models for examining the development and evolution of the stem gnathostome body plan. The fins of some cartilaginous fish are recognized for their plesiomorphic form and mode of muscular development, i.e., epithelial extension. Despite detailed molecular and descriptive examinations of these developmental mechanisms, there has been little contemporary examination of the ontogeny and morphology of the musculature in chondrichthyans including that of the paired fins. This gap represents a need for further examination of the developmental morphology of these appendicular musculatures to gain insight into their evolution in gnathostomes. The elephant shark is a Holocephalan, the sister group of all other chondrichthyans (Holocephali: Callorhinchus milii). Here, we use nano-CT imaging and 3D reconstructions to describe the development of the pelvic musculature of a growth series of elephant shark embryos. We also use historical descriptions from the nineteenth century and traditional dissection methods to describe the adult anatomy. This combined approach, using traditional methods and historical knowledge with modern imaging techniques, has enabled a more thorough examination of the anatomy and development of the pelvic musculature revealing that chimaeroid musculatures are more complex than previously thought. These data, when compared to extant and extinct sister taxa, are essential for interpreting and reconstructing fossil musculatures as well as understanding the evolution of paired fins

Library of Congress controlled vocabularies and their application to the Semantic Web

Pre-print of an article to be published in an upcoming issue of Cataloging & Classification Quarterly.This article discusses how various controlled vocabularies, classification schemes and thesauri can serve as some of the building blocks of the Semantic Web. These vocabularies have been developed over the course of decades, and can be put to great use in the development of robust web services and Semantic Web technologies. The article covers how initial collaboration between the Semantic Web, Library and Metadata communities are creating partnerships to complete work in this area. It then discusses some cores principles of authority control before talking more specifically about subject and genre vocabularies and name authority. It is hoped that future systems for internationally shared authority data will link the world's authority data from trusted sources to benefit users worldwide. Finally, the article looks at how encoding and markup of vocabularies can help ensure compatibility with the current and future state of Semantic Web development and provides examples of how this work can help improve the findability and navigation of information on the World Wide Web

Measurements of thorium and uranium daughters in radioenvironmental samples using γγ-coincidence spectrometry

We present the performance of a γγ-coincidence spectrometer for measuring the activities of thorium and uranium daughters in environmental samples. The spectrometer consists of two NaI(Tl) detectors facing each other inside a low-background passive shield. We present coincidence gating schemes for achieving the best signal-to-noise ratios, coincidence detection efficiencies, background levels, and minimum detectable activities. The spectrometer is simulated using Geant4 to correct sample efficiencies for self-absorption effects. The device is used to measure thorium and uranium daughter activities in Brazil nuts, potting mix, and magazine paper. Our results for Brazil nuts agree with some, but not all, previous measurements. Thorium or uranium daughter activities have previously not been reported for commercial potting mix. For magazine paper, our measured activities are lower than most previously determined values

Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets

Background: Abiotic stresses, such as water deficit and soil salinity, result in changes in physiology, nutrient use, and vegetative growth in vines, and ultimately, yield and flavor in berries of wine grape, Vitis vinifera L. Large-scale expressed sequence tags (ESTs) were generated, curated, and analyzed to identify major genetic determinants responsible for stressadaptive responses. Although roots serve as the first site of perception and/or injury for many types of abiotic stress, EST sequencing in root tissues of wine grape exposed to abiotic stresses has been extremely limited to date. To overcome this limitation, large-scale EST sequencing was conducted from root tissues exposed to multiple abiotic stresses. Results: A total of 62,236 expressed sequence tags (ESTs) were generated from leaf, berry, and root tissues from vines subjected to abiotic stresses and compared with 32,286 ESTs sequenced from 20 public cDNA libraries. Curation to correct annotation errors, clustering and assembly of the berry and leaf ESTs with currently available V. vinifera full-length transcripts and ESTs yielded a total of 13,278 unique sequences, with 2302 singletons and 10,976 mapped to V. vinifera gene models. Of these, 739 transcripts were found to have significant differential expression in stressed leaves and berries including 250 genes not described previously as being abiotic stress responsive. In a second analysis of 16,452 ESTs from a normalized root cDNA library derived from roots exposed to multiple, shortterm, abiotic stresses, 135 genes with root-enriched expression patterns were identified on the basis of their relative EST abundance in roots relative to other tissues. Conclusions: The large-scale analysis of relative EST frequency counts among a diverse collection of 23 different cDNA libraries from leaf, berry, and root tissues of wine grape exposed to a variety of abiotic stress conditions revealed distinct, tissue-specific expression patterns, previously unrecognized stress-induced genes, and many novel genes with root-enriched mRNA expression for improving our understanding of root biology and manipulation of rootstock traits in wine grape. mRNA abundance estimates based on EST library-enriched expression patterns showed only modest correlations between microarray and quantitative, real-time reverse transcription-polymerase chain reaction (qRT-PCR) methods highlighting the need for deep-sequencing expression profiling methods

Characterization of novel pollen-expressed transcripts reveals their potential roles in pollen heat stress response in Arabidopsis thaliana

Key message: Arabidopsis pollen transcriptome analysis revealed new intergenic transcripts of unknown function, many of which are long non-coding RNAs, that may function in pollen-specific processes, including the heat stress response. Abstract: The male gametophyte is the most heat sensitive of all plant tissues. In recent years, long noncoding RNAs (lncRNAs) have emerged as important components of cellular regulatory networks involved in most biological processes, including response to stress. While examining RNAseq datasets of developing and germinating Arabidopsis thaliana pollen exposed to heat stress (HS), we identified 66 novel and 246 recently annotated intergenic expressed loci (XLOCs) of unknown function, with the majority encoding lncRNAs. Comparison with HS in cauline leaves and other RNAseq experiments indicated that 74% of the 312 XLOCs are pollen-specific, and at least 42% are HS-responsive. Phylogenetic analysis revealed that 96% of the genes evolved recently in Brassicaceae. We found that 50 genes are putative targets of microRNAs and that 30% of the XLOCs contain small open reading frames (ORFs) with homology to protein sequences. Finally, RNAseq of ribosome-protected RNA fragments together with predictions of periodic footprint of the ribosome P-sites indicated that 23 of these ORFs are likely to be translated. Our findings indicate that many of the 312 unknown genes might be functional and play a significant role in pollen biology, including the HS response

Tissue-specific mRNA expression profiling in grape berry tissues

<p>Abstract</p> <p>Background</p> <p>Berries of grape (<it>Vitis vinifera</it>) contain three major tissue types (skin, pulp and seed) all of which contribute to the aroma, color, and flavor characters of wine. The pericarp, which is composed of the exocarp (skin) and mesocarp (pulp), not only functions to protect and feed the developing seed, but also to assist in the dispersal of the mature seed by avian and mammalian vectors. The skin provides volatile and nonvolatile aroma and color compounds, the pulp contributes organic acids and sugars, and the seeds provide condensed tannins, all of which are important to the formation of organoleptic characteristics of wine. In order to understand the transcriptional network responsible for controlling tissue-specific mRNA expression patterns, mRNA expression profiling was conducted on each tissue of mature berries of <it>V. vinifera </it>Cabernet Sauvignon using the Affymetrix GeneChip^®<it>Vitis </it>oligonucleotide microarray ver. 1.0. In order to monitor the influence of water-deficit stress on tissue-specific expression patterns, mRNA expression profiles were also compared from mature berries harvested from vines subjected to well-watered or water-deficit conditions.</p> <p>Results</p> <p>Overall, berry tissues were found to express approximately 76% of genes represented on the <it>Vitis </it>microarray. Approximately 60% of these genes exhibited significant differential expression in one or more of the three major tissue types with more than 28% of genes showing pronounced (2-fold or greater) differences in mRNA expression. The largest difference in tissue-specific expression was observed between the seed and pulp/skin. Exocarp tissue, which is involved in pathogen defense and pigment production, showed higher mRNA abundance relative to other berry tissues for genes involved with flavonoid biosynthesis, pathogen resistance, and cell wall modification. Mesocarp tissue, which is considered a nutritive tissue, exhibited a higher mRNA abundance of genes involved in cell wall function and transport processes. Seeds, which supply essential resources for embryo development, showed higher mRNA abundance of genes encoding phenylpropanoid biosynthetic enzymes, seed storage proteins, and late embryogenesis abundant proteins. Water-deficit stress affected the mRNA abundance of 13% of the genes with differential expression patterns occurring mainly in the pulp and skin. In pulp and seed tissues transcript abundance in most functional categories declined in water-deficit stressed vines relative to well-watered vines with transcripts for storage proteins and novel (no-hit) functional assignments being over represented. In the skin of berries from water-deficit stressed vines, however, transcripts from several functional categories including general phenypropanoid and ethylene metabolism, pathogenesis-related responses, energy, and interaction with the environment were significantly over-represented.</p> <p>Conclusion</p> <p>These results revealed novel insights into the tissue-specific expression mRNA expression patterns of an extensive repertoire of genes expressed in berry tissues. This work also establishes an extensive catalogue of gene expression patterns for future investigations aimed at the dissection of the transcriptional regulatory hierarchies that govern tissue-specific expression patterns associated with tissue differentiation within berries. These results also confirmed that water-deficit stress has a profound effect on mRNA expression patterns particularly associated with the biosynthesis of aroma and color metabolites within skin and pulp tissues that ultimately impact wine quality.</p

Psoriatic nail dystrophy is associated with erosive disease in the distal interphalangeal joints in psoriatic arthritis:a retrospective cohort study

Objective. To assess whether the association between psoriatic nail dystrophy and radiographic damage in the hands of patients with psoriatic arthritis (PsA) is specific to the distal interphalangeal (DIP) joints. Methods. A convenience sample of patients was collated from the Bath longitudinal PsA cohort. All patients had PsA according to the ClASsification for Psoriatic ARthritis criteria (CASPAR) criteria, scored radiographs of their hands, and documented nail scores as measured by the Psoriatic Nail Severity Score. Chi-square tests were performed to examine for association between features of nail dystrophy and radiographic damage in the DIP joints, and proximal interphalangeal or metacarpophalangeal (non-DIP) joints of the corresponding digits. Results. There were 134 patients included, with a median age of 53 years (interquartile range; IQR 44-61) and disease duration of 7 years (IQR 3-17). The presence of any form of psoriatic nail dystrophy was associated with erosion at the DIP joints of the corresponding digit (OR 1.9, 95% CI 1.23-2.83; p &lt; 0.004) and this association was primarily driven by the presence of nail onycholysis (OR 1.72; 95% CI 1.12-2.62; p = 0.02). Nail subungual hyperkeratosis was more strongly associated with joint space narrowing, erosions, and osteoproliferation at the corresponding DIP joint compared to non-DIP joints (p &lt; 0.001). Nail pitting was not associated with erosions or osteoproliferation. Conclusion. The presence of psoriatic nail dystrophy, particularly onycholysis, is associated with erosive disease at the DIP joints. Subungual hyperkeratosis is more strongly associated with erosive damage at the DIP than non-DIP joints. These findings support the anatomical and pathological link between nail and DIP joint disease.</p