Cluster and group synchronization in delay-coupled networks

We investigate the stability of synchronized states in delay-coupled networks where synchronization takes place in groups of different local dynamics or in cluster states in networks with identical local dynamics. Using a master stability approach, we find that the master stability function shows a discrete rotational symmetry depending on the number of groups. The coupling matrices that permit solutions on group or cluster synchronization manifolds show a very similar symmetry in their eigenvalue spectrum, which helps to simplify the evaluation of the master stability function. Our theory allows for the characterization of stability of different patterns of synchronized dynamics in networks with multiple delay times, multiple coupling functions, but also with multiple kinds of local dynamics in the networks' nodes. We illustrate our results by calculating stability in the example of delay-coupled semiconductor lasers and in a model for neuronal spiking dynamics.Comment: 11 pages, 7 figure

Heavy-flavor dynamics in nucleus-nucleus collisions: from RHIC to LHC

The stochastic dynamics of c and b quarks in the fireball created in nucleus-nucleus collisions at RHIC and LHC is studied employing a relativistic Langevin equation, based on a picture of multiple uncorrelated random collisions with the medium. Heavy-quark transport coefficients are evaluated within a pQCD approach, with a proper HTL resummation of medium effects for soft scatterings. The Langevin equation is embedded in a multi-step setup developed to study heavy-flavor observables in pp and AA collisions, starting from a NLO pQCD calculation of initial heavy-quark yields, complemented in the nuclear case by shadowing corrections, k_T-broadening and nuclear geometry effects. Then, only for AA collisions, the Langevin equation is solved numerically in a background medium described by relativistic hydrodynamics. Finally, the propagated heavy quarks are made hadronize and decay into electrons. Results for the nuclear modification factor R_AA of heavy-flavor hadrons and electrons from their semi-leptonic decays are provided, both for RHIC and LHC beam energies.Comment: 4 pages, 2 figures (3 eps files); submitted for publication in the proceedings of "Quark Matter 2011", 23-28 May 2011, Annecy (France

Direct photons ~basis for characterizing heavy ion collisions~

After years of experimental and theoretical efforts, direct photons become a strong and reliable tool to establish the basic characteristics of a hot and dense matter produced in heavy ion collisions. The recent direct photon measurements are reviewed and a future prospect is given.Comment: 8 pages, 8 figures, Invited plenary talk at Quark Matter 200

e+e- Pairs: a clock and a thermometer of heavy ion collisions

Recently, there is growing evidence that a new state of matter is formed in sqrt(s_NN)= 200 GeV Au+Au collisions at RHIC: a strongly coupled Quark Gluon Plasma of partonic degrees of freedom which develops a collective motion. Dilepton spectra are not affected by strong interaction and can therefore probe the whole time evolution of the collision. Thus they may be sensitive to onset of deconfinement, chiral symmetry restoration, as well as the production of thermal photons. The PHENIX experiment measured the production of e+e- pairs in p+p and Au+Au collisions at sqrt(s_NN)= 200 GeV. An enhanced dilepton yield in the mass range 150<m_ee<750 MeV/c^2 is measured. The excess increases faster with centrality than the number of participating nucleons and is concentrated at p_T<1GeV/c. At higher p_T the excess below 300 MeV/c^2 has been related to an enhanced production of direct photons possibly of thermal origin.Comment: Proceedings of Quark Matter 2008, 8 pages, 7 figure

Summary of Experimental Results: Photons, Leptons and Heavy Quarks

This is a summary of experimental results on photons, leptons, and heavy quarks presented at Quark Matter 2008. A first measurement of the bottom to charm contribution to the lepton spectrum has given experimental indication for the suppression of charm and bottom. Excess dileptons have been observed and studied by both NA60 and PHENIX, which may arise from the early production of thermal dileptons and/or the modification of mesons.Comment: 11 pages, 9 figures, Summary talk at Quark Matter 200

Synchronisation in networks of delay-coupled type-I excitable systems

We use a generic model for type-I excitability (known as the SNIPER or SNIC model) to describe the local dynamics of nodes within a network in the presence of non-zero coupling delays. Utilising the method of the Master Stability Function, we investigate the stability of the zero-lag synchronised dynamics of the network nodes and its dependence on the two coupling parameters, namely the coupling strength and delay time. Unlike in the FitzHugh-Nagumo model (a model for type-II excitability), there are parameter ranges where the stability of synchronisation depends on the coupling strength and delay time. One important implication of these results is that there exist complex networks for which the adding of inhibitory links in a small-world fashion may not only lead to a loss of stable synchronisation, but may also restabilise synchronisation or introduce multiple transitions between synchronisation and desynchronisation. To underline the scope of our results, we show using the Stuart-Landau model that such multiple transitions do not only occur in excitable systems, but also in oscillatory ones.Comment: 10 pages, 9 figure

Overview of experimental results in PbPb collisions at sqrt{s_NN} = 2.76 TeV by the CMS Collaboration

The CMS experiment at the LHC is a general-purpose apparatus with a set of large acceptance and high granularity detectors for hadrons, electrons, photons and muons, providing unique capabilities for both proton-proton and ion-ion collisions. The data collected during the November 2010 PbPb run at sqrt{s_NN} = 2.76 TeV was analyzed and multiple measurements of the properties of the hot and dense matter were obtained. Global event properties, detailed study of jet production and jet properties, isolated photons, quarkonia and weak bosons were measured and compared to pp data and Monte Carlo simulations.Comment: 8 pages, 10 figures, proceedings for Quark Matter 2011, Annecy, France, May 23-28, 201

Dynamics of fully coupled rotators with unimodal and bimodal frequency distribution

We analyze the synchronization transition of a globally coupled network of N phase oscillators with inertia (rotators) whose natural frequencies are unimodally or bimodally distributed. In the unimodal case, the system exhibits a discontinuous hysteretic transition from an incoherent to a partially synchronized (PS) state. For sufficiently large inertia, the system reveals the coexistence of a PS state and of a standing wave (SW) solution. In the bimodal case, the hysteretic synchronization transition involves several states. Namely, the system becomes coherent passing through traveling waves (TWs), SWs and finally arriving to a PS regime. The transition to the PS state from the SW occurs always at the same coupling, independently of the system size, while its value increases linearly with the inertia. On the other hand the critical coupling required to observe TWs and SWs increases with N suggesting that in the thermodynamic limit the transition from incoherence to PS will occur without any intermediate states. Finally a linear stability analysis reveals that the system is hysteretic not only at the level of macroscopic indicators, but also microscopically as verified by measuring the maximal Lyapunov exponent.Comment: 22 pages, 11 figures, contribution for the book: Control of Self-Organizing Nonlinear Systems, Springer Series in Energetics, eds E. Schoell, S.H.L. Klapp, P. Hoeve

Towards net zero CO2 in 2050: an emission reduction pathway for organic soils in Germany

The Paris Agreement reflects the global endeavour to limit the increase of global average temperature to 2 °C, better 1.5 °C above pre-industrial levels to prevent dangerous climate change. This requires that global anthropogenic net carbon dioxide (CO2) emissions are reduced to zero around 2050. The German Climate Protection Plan substantiates this goal and explicitly mentions peatlands, which make up 5 % of the total area under land use and emit 5.7 % of total annual greenhouse gas emissions in Germany. Based on inventory reporting and assumptions of land use change probability, we have developed emission reduction pathways for organic soils in Germany that on a national level comply with the IPCC 1.5 °C pathways. The more gradual pathway 1 requires the following interim (2030, 2040) and ultimate (2050) milestones: Cropland use stopped and all Cropland converted to Grassland by 2030; Water tables raised to the soil surface on 15 % / 60 % / 100 % of all Grassland, on 50 % / 75 % / 100 % of all Forest land, and ultimately on 2/3 of all Settlements and on 100 % of all Wetlands. Also a more direct pathway 2 without interim ‘moist’ water tables and the climate effect (radiative forcing) of different scenarios is presente

CAMISIM: Simulating metagenomes and microbial communities

© 2019 The Author(s). Background: Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequencing technologies. Accordingly, to effectively assess the performance of metagenomic analysis software, a wide range of benchmark data sets are required. Results: We describe the CAMISIM microbial community and metagenome simulator. The software can model different microbial abundance profiles, multi-sample time series, and differential abundance studies, includes real and simulated strain-level diversity, and generates second- and third-generation sequencing data from taxonomic profiles or de novo. Gold standards are created for sequence assembly, genome binning, taxonomic binning, and taxonomic profiling. CAMSIM generated the benchmark data sets of the first CAMI challenge. For two simulated multi-sample data sets of the human and mouse gut microbiomes, we observed high functional congruence to the real data. As further applications, we investigated the effect of varying evolutionary genome divergence, sequencing depth, and read error profiles on two popular metagenome assemblers, MEGAHIT, and metaSPAdes, on several thousand small data sets generated with CAMISIM. Conclusions: CAMISIM can simulate a wide variety of microbial communities and metagenome data sets together with standards of truth for method evaluation