78 research outputs found
Excited states in bilayer graphene quantum dots
We report on ground- and excited state transport through an electrostatically
defined few-hole quantum dot in bilayer graphene in both parallel and
perpendicular applied magnetic fields. A remarkably clear level scheme for the
two-particle spectra is found by analyzing finite bias spectroscopy data within
a two-particle model including spin and valley degrees of freedom. We identify
the two-hole ground-state to be a spin-triplet and valley-singlet state. This
spin alignment can be seen as Hund's rule for a valley-degenerate system, which
is fundamentally different to quantum dots in carbon nano tubes and GaAs-based
quantum dots. The spin-singlet excited states are found to be valley-triplet
states by tilting the magnetic field with respect to the sample plane. We
quantify the exchange energy to be 0.35meV and measure a valley and spin
g-factor of 36 and 2, respectively
Probing the magnetic moment of FePt micromagnets prepared by Focused Ion Beam milling
We investigate the degradation of the magnetic moment of a 300 nm thick FePt
film induced by Focused Ion Beam (FIB) milling. A rod is milled out of a film by a FIB process and is attached
to a cantilever by electron beam induced deposition. Its magnetic moment is
determined by frequency-shift cantilever magnetometry. We find that the
magnetic moment of the rod is , which implies that 70% of the magnetic moment is preserved
during the FIB milling process. This result has important implications for atom
trapping and magnetic resonance force microscopy (MRFM), that are addressed in
this paper.Comment: 4 pages, 4 figure
The putative proteinase maturation protein A of Streptococcus pneumoniae is a conserved surface protein with potential to elicit protective immune responses
Surface-exposed proteins often play an important role in the interaction
between pathogenic bacteria and their host. We isolated a pool of
hydrophobic, surface-associated proteins of Streptococcus pneumoniae. The
opsonophagocytic activity of hyperimmune serum raised against this protein
fraction was high and species specific. Moreover, the opsonophagocytic
activity was independent of the capsular type and chromosomal genotype of
the pneumococcus. Since the opsonophagocytic activity is presumed to
correlate with in vivo protection, these data indicate that the protein
fraction has the potential to elicit species-specific immune protection
with cross-protection against various pneumococcal strains. Individual
proteins in the extract were purified by two-dimensional gel
electrophoresis. Antibodies raised against three distinct proteins
contributed to the opsonophagocytic activity of the serum. The proteins
were identified by mass spectrometry and N-terminal amino acid sequencing.
Two proteins were the previously characterized pneumococcal surface
protein A and oligopeptide-binding lipoprotein AmiA. The third protein was
the recently identified putative proteinase maturation protein A (PpmA),
which showed homology to members of the family of peptidyl-prolyl
cis/trans isomerases. Immunoelectron microscopy demonstrated that PpmA was
associated with the pneumococcal surface. In addition, PpmA was shown to
elicit species-specific opsonophagocytic antibodies that were
cross-reactive with various pneumococcal strains. This antibody
cross-reactivity was in line with the limited sequence variation of ppmA.
The importance of PpmA in pneumococcal pathogenesis was demonstrated in a
mouse pneumonia model. Pneumococcal ppmA-deficient mutants showed reduced
virulence. The properties of PpmA reported here indicate its potential for
inclusion in multicomponent protein vaccines
Effects of deletion of the Streptococcus pneumoniae lipoprotein diacylglyceryl transferase gene lgt on ABC transporter function and on growth in vivo
Lipoproteins are an important class of surface associated proteins that have diverse roles and frequently are involved in the virulence of bacterial pathogens. As prolipoproteins are attached to the cell membrane by a single enzyme, prolipoprotein diacylglyceryl transferase (Lgt), deletion of the corresponding gene potentially allows the characterisation of the overall importance of lipoproteins for specific bacterial functions. We have used a Δlgt mutant strain of Streptococcus pneumoniae to investigate the effects of loss of lipoprotein attachment on cation acquisition, growth in media containing specific carbon sources, and virulence in different infection models. Immunoblots of triton X-114 extracts, flow cytometry and immuno-fluorescence microscopy confirmed the Δlgt mutant had markedly reduced lipoprotein expression on the cell surface. The Δlgt mutant had reduced growth in cation depleted medium, increased sensitivity to oxidative stress, reduced zinc uptake, and reduced intracellular levels of several cations. Doubling time of the Δlgt mutant was also increased slightly when grown in medium with glucose, raffinose and maltotriose as sole carbon sources. These multiple defects in cation and sugar ABC transporter function for the Δlgt mutant were associated with only slightly delayed growth in complete medium. However the Δlgt mutant had significantly reduced growth in blood or bronchoalveolar lavage fluid and a marked impairment in virulence in mouse models of nasopharyngeal colonisation, sepsis and pneumonia. These data suggest that for S. pneumoniae loss of surface localisation of lipoproteins has widespread effects on ABC transporter functions that collectively prevent the Δlgt mutant from establishing invasive infection
Differences in genotype and virulence among four multidrug-resistant <i>Streptococcus pneumoniae</i> isolates belonging to the PMEN1 clone
We report on the comparative genomics and characterization of the virulence phenotypes of four <i>S. pneumoniae</i> strains that belong to the multidrug resistant clone PMEN1 (Spain<sup>23F</sup> ST81). Strains SV35-T23 and SV36-T3 were recovered in 1996 from the nasopharynx of patients at an AIDS hospice in New York. Strain SV36-T3 expressed capsule type 3 which is unusual for this clone and represents the product of an in vivo capsular switch event. A third PMEN1 isolate - PN4595-T23 - was recovered in 1996 from the nasopharynx of a child attending day care in Portugal, and a fourth strain - ATCC700669 - was originally isolated from a patient with pneumococcal disease in Spain in 1984. We compared the genomes among four PMEN1 strains and 47 previously sequenced pneumococcal isolates for gene possession differences and allelic variations within core genes. In contrast to the 47 strains - representing a variety of clonal types - the four PMEN1 strains grouped closely together, demonstrating high genomic conservation within this lineage relative to the rest of the species. In the four PMEN1 strains allelic and gene possession differences were clustered into 18 genomic regions including the capsule, the blp bacteriocins, erythromycin resistance, the MM1-2008 prophage and multiple cell wall anchored proteins. In spite of their genomic similarity, the high resolution chinchilla model was able to detect variations in virulence properties of the PMEN1 strains highlighting how small genic or allelic variation can lead to significant changes in pathogenicity and making this set of strains ideal for the identification of novel virulence determinant
Evolution of Fe Species During the Synthesis of Over-Exchanged Fe/ZSM5 Obtained by Chemical Vapor Deposition of FeCl3
Abstract The evolution of iron in over-exchanged Fe/ZSM5 prepared via chemical vapor deposition of FeCl 3 was studied at each stage of the synthesis. Different characterization techniques (EXAFS, HR-XANES
Paroxysmal exercise-induced dyskinesia and epilepsy is due to mutations in SLC2A1, encoding the glucose transporter GLUT1
Paroxysmal exercise-induced dyskinesia (PED) can occur in isolation or in association with epilepsy, but the genetic causes and pathophysiological mechanisms are still poorly understood. We performed a clinical evaluation and genetic analysis in a five-generation family with co-occurrence of PED and epilepsy (n = 39), suggesting that this combination represents a clinical entity. Based on a whole genome linkage analysis we screened SLC2A1, encoding the glucose transporter of the blood-brain-barrier, GLUT1 and identified heterozygous missense and frameshift mutations segregating in this and three other nuclear families with a similar phenotype. PED was characterized by choreoathetosis, dystonia or both, affecting mainly the legs. Predominant epileptic seizure types were primary generalized. A median CSF/blood glucose ratio of 0.52 (normal >0.60) in the patients and a reduced glucose uptake by mutated transporters compared with the wild-type as determined in Xenopus oocytes confirmed a pathogenic role of these mutations. Functional imaging studies implicated alterations in glucose metabolism in the corticostriate pathways in the pathophysiology of PED and in the frontal lobe cortex in the pathophysiology of epileptic seizures. Three patients were successfully treated with a ketogenic diet. In conclusion, co-occurring PED and epilepsy can be due to autosomal dominant heterozygous SLC2A1 mutations, expanding the phenotypic spectrum associated with GLUT1 deficiency and providing a potential new treatment option for this clinical syndrome
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
Background
Streptococcus pneumoniae is one of the most important causes of microbial diseases in humans. The genomes of 44 diverse strains of S. pneumoniae were analyzed and compared with strains of non-pathogenic streptococci of the Mitis group.
Results
Despite evidence of extensive recombination, the S. pneumoniae phylogenetic tree revealed six major lineages. With the exception of serotype 1, the tree correlated poorly with capsular serotype, geographical site of isolation and disease outcome. The distribution of dispensable genes, genes present in not all, but more than one strain, was consistent with phylogeny, although horizontal gene transfer events attenuated this correlation in the case of ancient lineages. Homologous recombination, involving short stretches of DNA, was the dominant 13 evolutionary process of the core genome of S. pneumoniae. Genetic exchange occurred both within and across the borders of the species, and S. mitis was the main reservoir of genetic diversity of S. pneumoniae. The pan-genome size of S. pneumoniae increased logarithmically with the number of strains and linearly with the number of polymorphic sites of the sampled genomes, suggesting that acquired genes accumulate proportionately to the age of clones. Most genes associated with pathogenicity were shared by all S. pneumoniae strains, but were also present in S. mitis, S. oralis and S. infantis, indicating that these genes are not sufficient to determine virulence.
Conclusion
Genetic exchange with related species sharing the same ecological niche is the main mechanism of evolution of S. pneumoniae. The open pan genome guarantees the species a quick and economical response to diverse environments
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