Genome of Drosophila suzukii, the spotted wing drosophila.

Drosophila suzukii Matsumura (spotted wing drosophila) has recently become a serious pest of a wide variety of fruit crops in the United States as well as in Europe, leading to substantial yearly crop losses. To enable basic and applied research of this important pest, we sequenced the D. suzukii genome to obtain a high-quality reference sequence. Here, we discuss the basic properties of the genome and transcriptome and describe patterns of genome evolution in D. suzukii and its close relatives. Our analyses and genome annotations are presented in a web portal, SpottedWingFlyBase, to facilitate public access

Retrieval of daytime mesospheric ozone using OSIRIS observations of O2 (a1Δg) emission

This work is distributed under the Creative Commons Attribution 4.0 License. Improving knowledge of the ozone global distributions in the mesosphere-lower thermosphere (MLT) is a crucial step in understanding the behaviour of the middle atmosphere. However, the concentration of ozone under sunlit conditions in the MLT is often so low that its measurement requires instruments with very high sensitivity. Fortunately, the bright oxygen airglow can serve as a proxy to retrieve the daytime ozone density indirectly, due to the strong connection to ozone photolysis in the Hartley band. The OSIRIS IR imager (hereafter, IRI), one of the instruments on the Odin satellite, routinely measures the oxygen infrared atmospheric band (IRA band) at 1.27 μm. In this paper, we will primarily focus on the detailed description of the steps done for retrieving the calibrated IRA band limb radiance (with <10 % random error), the volume emission rate of O2 (a1i"g) (with <25 % random error) and finally the ozone number density (with <20 % random error). This retrieval technique is applied to a 1-year sample from the IRI dataset. The resulting product is a new ozone dataset with very tight along-track sampling distance (<20 km). The feasibility of the retrieval technique is demonstrated by a comparison of coincident ozone measurements from other instruments aboard the same spacecraft, as well as zonal mean and monthly average comparisons between Odin-OSIRIS (both spectrograph and IRI), Odin-SMR and Envisat-MIPAS. We find that IRI appears to have a positive bias of up to 25 % below 75 km, and up to 50 % in some regions above. We attribute these differences to uncertainty in the IRI calibration as well as uncertainties in the photochemical constants. However, the IRI ozone dataset is consistent with the compared dataset in terms of the overall atmospheric distribution of ozone between 50 and 100 km. If the origin of the bias can be identified before processing the entire dataset, this will be corrected and noted in the dataset description. The retrieval technique described in this paper can be further applied to all the measurements made throughout the 19 year mission, leading to a new, long-term high-resolution ozone dataset in the middle atmosphere

The OH (3-1) nightglow volume emission rate retrieved from OSIRIS measurements: 2001 to 2015

The OH airglow has been used to investigate the chemistry and dynamics of the mesosphere and the lower thermosphere (MLT) for a long time. The infrared imager (IRI) aboard the Odin satellite has been recording the night-time 1.53 mu m OH (3-1) emission for more than 15 years (2001-2015), and we have recently processed the complete data set. The newly derived data products contain the volume emission rate profiles and the Gaussian-approximated layer height, thickness, peak intensity and zenith intensity, and their corresponding error estimates. In this study, we describe the retrieval steps for these data products. We also provide data screening recommendations. The monthly zonal averages depict the well-known annual oscillation and semi-annual oscillation signatures, which demonstrate the fidelity of the data set (https://doi.org/10.5281/zenodo.4746506, Li et al., 2021). The uniqueness of this Odin IRI OH long-term data set makes it valuable for studying various topics, for instance, the sudden stratospheric warming events in the polar regions and solar cycle influences on the MLT

Improvement of Odin/SMR water vapour and temperature measurements and validation of the obtained data sets

Its long photochemical lifetime makes H2O a good tracer for mesospheric dynamics. Temperature observations are also critical to study middle atmospheric dynamics. In this study, we present the reprocessing of 18 years of mesospheric H2O and temperature measurements from the Sub-Millimetre Radiometer (SMR) aboard the Odin satellite, resulting in a part of the SMR version 3.0 level 2 data set. The previous version of the data set showed poor accordance with measurements from other instruments, which suggested that the retrieved concentrations and temperature were subject to instrumental artefacts. Different hypotheses have been explored, and the idea of an underestimation of the singlesideband leakage turned out to be the most reasonable one. The value of the lowest transmission achievable has therefore been raised to account for greater sideband leakage, and new retrievals have been performed with the new settings. The retrieved profiles extend between 40-100 km altitude and cover the whole globe to reach 85\ub0 latitudes. A validation study has been carried out, revealing an overall better accordance with the compared instruments. In particular, relative differences in H2O mixing ratio are always in the \ub120% range between 40 and 70 km and diverge at higher altitudes, while temperature absolute differences are within \ub15K between 40-80 km and also diverge at higher altitudes

Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella

This is the peer reviewed version of the following article: Hamm, C. A., Begun, D. J., Vo, A., Smith, C. C. R., Saelao, P., Shaver, A. O., Jaenike, J. and Turelli, M. (2014), Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella. Mol Ecol, 23: 4871–4885. doi:10.1111/mec.12901, which has been published in final form at http://doi.org/10.1111/mec.12901. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving.Drosophila suzukii recently invaded North America and Europe. Populations in Hawaii, California, New York and Nova Scotia are polymorphic for Wolbachia, typically with <20% infection frequency. The Wolbachia in D. suzukii, denoted wSuz, is closely related to wRi, the variant prevalent in continental populations of D. simulans. wSuz is also nearly identical to Wolbachia found in D. subpulchrella, plausibly D. suzukii's sister species. This suggests vertical Wolbachia transmission through cladogenesis (“cladogenic transmission”). The widespread occurrence of 7-20% infection frequencies indicates a stable polymorphism. wSuz is imperfectly maternally transmitted, with wild infected females producing on average 5-10% uninfected progeny. As expected from its low frequency, wSuz produces no cytoplasmic incompatibility (CI), i.e., no elevated embryo mortality when infected males mate with uninfected females, and no appreciable sex-ratio distortion. The persistence of wSuz despite imperfect maternal transmission suggests positive fitness effects. Assuming a balance between selection and imperfect transmission, we expect a fitness advantage on the order of 20%. Unexpectedly, Wolbachia-infected females produce fewer progeny than do uninfected females. We do not yet understand the maintenance of wSuz in D. suzukii. The absence of detectable CI in D. suzukii and D. subpulchrella makes it unlikely that CI-based mechanisms could be used to control this species without transinfection using novel Wolbachia. Contrary to their reputation as horizontally transmitted reproductive parasites, many Wolbachia infections are acquired through introgression or cladogenesis and many cause no appreciable reproductive manipulation. Such infections, likely to be mutualistic, may be central to understanding the pervasiveness of Wolbachia among arthropods

Comparison of nitric oxide measurements in the mesosphere and lower thermosphere from ACE-FTS, MIPAS, SCIAMACHY, and SMR

We compare the nitric oxide measurements in the mesosphere and lower thermosphere (60 to 150 km) from four instruments: ACE-FTS, MIPAS, SCIAMACHY, and SMR. We use the daily zonal mean data in that altitude range for the years 2004-2010 (ACE-FTS), 2005-2012 (MIPAS), 2008-2012 (SCIAMACHY), and 2003-2012 (SMR). We first compare the data qualitatively with respect to the morphology, focussing on the major features, and then compare the time series directly and quantitatively. In three geographical regions, we compare the vertical density profiles on coincident measurement days. Since none of the instruments delivers continuous daily measurements in this altitude region, we carried out a multi-linear regression analysis. This regression analysis considers annual and semi-annual variability in form of harmonic terms and inter-annual variability by responding linearly to the solar Lyman-alpha; radiation index and the geomagnetic Kp index. This analysis helps to find similarities and differences in the individual data sets with respect to the inter-annual variations caused by geomagnetic and solar variability. We find that the data sets are consistent and that they only disagree on minor aspects. SMR and ACE-FTS deliver the longest time series in the mesosphere and they both agree remarkably well. The shorter time series from MIPAS and SCIAMACHY also agree with them where they overlap. The data agree within ten to twenty percent when the number densities are large, but they can differ by 50 to 100% in some cases