Phase Space Reconstruction Based CVD Classifier Using Localized Features

This is the final version. Available on open access from Nature Research via the DOI in this recordData Availability: The datasets analysed during the current study are available in the ‘PhysioNet’; the web address is [https://physionet.org/cgi-bin/atm/ATM].This paper proposes a generalized Phase Space Reconstruction (PSR) based Cardiovascular Diseases (CVD) classification methodology by exploiting the localized features of the ECG. The proposed methodology first extracts the ECG localized features including PR interval, QRS complex, and QT interval from the continuous ECG waveform using features extraction logic, then the PSR technique is applied to get the phase portraits of all the localized features. Based on the cleanliness and contour of the phase portraits CVD classification will be done. This is first of its kind approach where the localized features of ECG are being taken into considerations unlike the state-of-art approaches, where the entire ECG beats have been considered. The proposed methodology is generic and can be extended to most of the CVD cases. It is verified on the PTBDB and IAFDB databases by taking the CVD including Atrial Fibrillation, Myocardial Infarction, Bundle Branch Block, Cardiomyopathy, Dysrhythmia, and Hypertrophy. The methodology has been tested on 65 patients’ data for the classification of abnormalities in PR interval, QRS complex, and QT interval. Based on the obtained statistical results, to detect the abnormality in PR interval, QRS complex and QT interval the Coefficient Variation (CV) should be greater than or equal to 0.1012, 0.083, 0.082 respectively with individual accuracy levels of 95.3%, 96.9%, and 98.5% respectively. To justify the clinical significance of the proposed methodology, the Confidence Interval (CI), the p-value using ANOVA have been computed. The p-value obtained is less than 0.05, and greater F-statistic values reveal the robust classification of CVD using localized features.Department of Science & Technology (DST

Exploring strategies for classification of external stimuli using statistical features of the plant electrical response

This is the author accepted manuscript. The final version is available from the Royal Society via the DOI in this record.Plants sense their environment by producing electrical signals which in essence represent changes in underlying physiological processes. These electrical signals, when monitored, show both stochastic and deterministic dynamics. In this paper, we compute 11 statistical features from the raw non-stationary plant electrical signal time series to classify the stimulus applied (causing the electrical signal). By using different discriminant analysis-based classification techniques, we successfully establish that there is enough information in the raw electrical signal to classify the stimuli. In the process, we also propose two standard features which consistently give good classification results for three types of stimuli--sodium chloride (NaCl), sulfuric acid (H₂SO₄) and ozone (O₃). This may facilitate reduction in the complexity involved in computing all the features for online classification of similar external stimuli in future.The work reported in this paper was supported by project PLants Employed As SEnsor Devices (PLEASED), EC grant agreement number 296582

Classification methodology of CVD with localized feature analysis using Phase Space Reconstruction targeting personalized remote health monitoring

2016 Computing in Cardiology Conference (CinC), 11-14 September 2016, Vancouver, BC, CanadaThis is the final version of the article. Available from the publisher via the DOI in this recordThis paper introduces the classification methodology of Cardiovascular Disease (CVD) with localized feature analysis using Phase Space Reconstruction (PSR) technique targeting personalized health care. The proposed classification methodology uses a few localized features (QRS interval and PR interval) of individual Electrocardiogram (ECG) beats from the Feature Extraction (FE) block and detects the desynchronization in the given intervals after applying the PSR technique. Considering the QRS interval, if any notch is present in the QRS complex, then the corresponding contour will appear and the variation in the box count indicating a notch in the QRS complex. Likewise, the contour and the disparity of box count due to the variation in the PR interval localized wave have been noticed using the proposed PSR technique. ECG database from the Physionet (MIT-BIH and PTBDB) has been used to verify the proposed analysis on localized features using proposed PSR and has enabled us to classify the various abnormalities like fragmented QRS complexes, myocardial infarction, ventricular arrhythmia and atrial fibrillation. The design have been successfully tested for diagnosing various disorders with 98% accuracy on all the specified abnormal databases.This work is partly supported by the Department of Electronics and Information and Technology (DeitY), India under the “Internet of Things (IoT) for Smarter Healthcare” under Grant No: 13(7)/2012-CC&BT, dated 25 Feb 2013. Naresh V is funded by Ministry of Human Resource Development (MHRD) PhD studentship through IIT Hyderabad

Classification of autism spectrum disorder using supervised learning of brain connectivity measures extracted from synchrostates

This is the author accepted manuscript. The final version is available from IOP Publishing via the DOI in this record.OBJECTIVE: The paper investigates the presence of autism using the functional brain connectivity measures derived from electro-encephalogram (EEG) of children during face perception tasks. APPROACH: Phase synchronized patterns from 128-channel EEG signals are obtained for typical children and children with autism spectrum disorder (ASD). The phase synchronized states or synchrostates temporally switch amongst themselves as an underlying process for the completion of a particular cognitive task. We used 12 subjects in each group (ASD and typical) for analyzing their EEG while processing fearful, happy and neutral faces. The minimal and maximally occurring synchrostates for each subject are chosen for extraction of brain connectivity features, which are used for classification between these two groups of subjects. Among different supervised learning techniques, we here explored the discriminant analysis and support vector machine both with polynomial kernels for the classification task. MAIN RESULTS: The leave one out cross-validation of the classification algorithm gives 94.7% accuracy as the best performance with corresponding sensitivity and specificity values as 85.7% and 100% respectively. SIGNIFICANCE: The proposed method gives high classification accuracies and outperforms other contemporary research results. The effectiveness of the proposed method for classification of autistic and typical children suggests the possibility of using it on a larger population to validate it for clinical practice.The work presented in this paper was supported by FP7 EU funded MICHELANGELO project, Grant Agreement #288241. URL: www.michelangelo-project.eu/

Forward and Inverse Modelling Approaches for Prediction of Light Stimulus from Electrophysiological Response in Plants

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this record.In this paper, system identification approach has been adopted to develop a novel dynamical model for describing the relationship between light as an environmental stimulus and the electrical response as the measured output for a bay leaf (Laurus nobilis) plant. More specifically, the target is to predict the characteristics of the input light stimulus (in terms of on-off timing, duration and intensity) from the measured electrical response - leading to an inverse problem. We explored two major classes of system estimators to develop dynamical models - linear and nonlinear - and their several variants for establishing a forward and also an inverse relationship between the light stimulus and plant electrical response. The best class of models are given by the Nonlinear Hammerstein-Wiener (NLHW) estimator showing good data fitting results over other linear and nonlinear estimators in a statistical sense. Consequently, a few set of models using different functional variants of NLHW has been developed and their accuracy in detecting the on-off timing and intensity of the input light stimulus are compared for 19 independent plant datasets (including 2 additional species viz. Zamioculcas zamiifolia and Cucumis sativus) under similar experimental scenario.The work reported in this paper was supported by project PLants Employed As SEnsor Devices (PLEASED), EC grant agreement number 296582

Detecting Elementary Arm Movements by Tracking Upper Limb Joint Angles With MARG Sensors

This paper reports an algorithm for the detection of three elementary upper limb movements, i.e., reach and retrieve, bend the arm at the elbow and rotation of the arm about the long axis. We employ two MARG sensors, attached at the elbow and wrist, from which the kinematic properties (joint angles, position) of the upper arm and forearm are calculated through data fusion using a quaternion-based gradient-descent method and a two-link model of the upper limb. By studying the kinematic patterns of the three movements on a small dataset, we derive discriminative features that are indicative of each movement; these are then used to formulate the proposed detection algorithm. Our novel approach of employing the joint angles and position to discriminate the three fundamental movements was evaluated in a series of experiments with 22 volunteers who participated in the study: 18 healthy subjects and four stroke survivors. In a controlled experiment, each volunteer was instructed to perform each movement a number of times. This was complimented by a seminaturalistic experiment where the volunteers performed the same movements as subtasks of an activity that emulated the preparation of a cup of tea. In the stroke survivors group, the overall detection accuracy for all three movements was 93.75% and 83.00%, for the controlled and seminaturalistic experiment, respectively. The performance was higher in the healthy group where 96.85% of the tasks in the controlled experiment and 89.69% in the seminaturalistic were detected correctly. Finally, the detection ratio remains close (±6%) to the average value, for different task durations further attesting to the algorithms robustness

Prediction of Synchrostate Transitions in EEG Signals Using Markov Chain Models

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this record.This paper proposes a stochastic model using the concept of Markov chains for the inter-state transitions of the millisecond order quasi-stable phase synchronized patterns or synchrostates, found in multi-channel Electroencephalogram (EEG) signals. First and second order transition probability matrices are estimated for Markov chain modelling from 100 trials of 128-channel EEG signals during two different face perception tasks. Prediction accuracies with such finite Markov chain models for synchrostate transition are also compared, under a data-partitioning based cross-validation scheme.The work presented in this paper was supported by FP7 EU funded MICHELANGELO project, Grant Agreement #288241

Drift Removal in Plant Electrical Signals via IIR Filtering Using Wavelet Energy

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this record.Plant electrical signals often contains low frequency drifts with or without the application of external stimuli. Quantification of the randomness in plant signals in a stimulus-specific way is hindered because the knowledge of vital frequency information in the actual biological response is not known yet. Here we design an optimum Infinite Impulse Response (IIR) filter which removes the low frequency drifts and preserves the frequency spectrum corresponding to the random component of the unstimulated plant signals by bringing the bias due to unknown artifacts and drifts to a minimum. We use energy criteria of wavelet packet transform (WPT) for optimization based tuning of the IIR filter parameters. Such an optimum filter enforces that the energy distribution of the pre-stimulus parts in different experiments are almost overlapped but under different stimuli the distributions of the energy get changed. The reported research may popularize plant signal processing, as a separate field, besides other conventional bioelectrical signal processing paradigms.This work was supported by EU FP7 project PLants Employed As SEnsor Devices (PLEASED), EC grant agreement number 296582