48 research outputs found

    Dissolved oxygen isotope modelling refines metabolic state estimates of stream ecosystems with different land use background

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    Dissolved oxygen (DO) is crucial for aerobic life in streams and rivers and mostly depends on photosynthesis (P), ecosystem respiration (R) and atmospheric gas exchange (G). However, climate and land use changes progressively disrupt metabolic balances in natural streams as sensitive reflectors of their catchments. Comprehensive methods for mapping fundamental ecosystem services become increasingly important in a rapidly changing environment. In this work we tested DO and its stable isotope (18^{18}O16^{16}O) ratios as novel tools for the status of stream ecosystems. For this purpose, six diel sampling campaigns were performed at three low-order and mid-latitude European streams with different land use patterns. Modelling of diel DO and its stable isotopes combined with land use analyses showed lowest P rates at forested sites, with a minimum of 17.9 mg m−2^{-2} h−1^{-1}. Due to high R rates between 230 and 341 mg m−2^{-2} h−1^{-1} five out of six study sites showed a general heterotrophic state with P:R:G ratios between 0.1:1.1:1 and 1:1.9:1. Only one site with agricultural and urban influences showed a high P rate of 417 mg m−2^{-2} h−1^{-1} with a P:R:G ratio of 1.9:1.5:1. Between all sites gross G rates varied between 148 and 298 mg m−2^{-2} h−1^{-1}. In general, metabolic rates depend on the distance of sampling locations to river sources, light availability, nutrient concentrations and possible exchanges with groundwater. The presented modelling approach introduces a new and powerful tool to study effects of land use on stream health. Such approaches should be integrated into future ecological monitoring

    High-resolution 7-Tesla fMRI data on the perception of musical genres – an extension to the studyforrest dataset

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    Here we present an extension to the studyforrest dataset – a versatile resource for studying the behavior of the human brain in situations of real-life complexity (http://studyforrest.org). This release adds more high-resolution, ultra high-field (7 Tesla) functional magnetic resonance imaging (fMRI) data from the same individuals. The twenty participants were repeatedly stimulated with a total of 25 music clips, with and without speech content, from five different genres using a slow event-related paradigm. The data release includes raw fMRI data, as well as precomputed structural alignments for within-subject and group analysis. In addition to fMRI, simultaneously recorded cardiac and respiratory traces, as well the complete implementation of the stimulation paradigm, including stimuli, are provided. An initial quality control analysis reveals distinguishable patterns of response to individual genres throughout a large expanse of areas known to be involved in auditory and speech processing. The present data can be used to, for example, generate encoding models for music perception that can be validated against the previously released fMRI data from stimulation with the “Forrest Gump” audio-movie and its rich musical content. In order to facilitate replicative and derived works, only free and open-source software was utilized

    Schizosaccharomyces pombe Ofd2 Is a Nuclear 2-Oxoglutarate and Iron Dependent Dioxygenase Interacting with Histones

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    2-oxoglutarate (2OG) dependent dioxygenases are ubiquitous iron containing enzymes that couple substrate oxidation to the conversion of 2OG to succinate and carbon dioxide. They participate in a wide range of biological processes including collagen biosynthesis, fatty acid metabolism, hypoxic sensing and demethylation of nucleic acids and histones. Although substantial progress has been made in elucidating their function, the role of many 2OG dioxygenases remains enigmatic. Here we have studied the 2OG and iron (Fe(II)) dependent dioxygenase Ofd2 in Schizosaccharomyces pombe, a member of the AlkB subfamily of dioxygenases. We show that decarboxylation of 2OG by recombinant Ofd2 is dependent on Fe(II) and a histidine residue predicted to be involved in Fe(II) coordination. The decarboxylase activity of Ofd2 is stimulated by histones, and H2A has the strongest effect. Ofd2 interacts with all four core histones, however, only very weakly with H4. Our results define a new subclass of AlkB proteins interacting with histones, which also might comprise some of the human AlkB homologs with unknown function

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    Ecohydrology, mire drainage and mire conservation

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    Redox Active Polymer Brushes with Phenothiazine Moieties

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