Thin film superconducting quantum interferometer with ultralow inductance

A simple method has been developed for manufacturing a thin film superconducting quantum interferometer (SQI) with ultralow inductance (~10^-13 H). Current-voltage and voltage-field characteristics of the SQI are presented. The basic design equations are obtained and confirmed experimentally. The SQI has been used for the first time to determine the penetration depth of a magnetic field into a film of 50% In-50% Sn alloy.Comment: 5 pages, 5 gigure

Geometric observation for the Bures fidelity between two states of a qubit

In this Brief Report, we present a geometric observation for the Bures fidelity between two states of a qubit.Comment: 4 pages, 1 figure, RevTex, Accepted by Phys. Rev.

Direct Josephson coupling between superconducting flux qubits

We have demonstrated strong antiferromagnetic coupling between two three-junction flux qubits based on a shared Josephson junction, and therefore not limited by the small inductances of the qubit loops. The coupling sign and magnitude were measured by coupling the system to a high-quality superconducting tank circuit. Design modifications allowing to continuously tune the coupling strength and/or make the coupling ferromagnetic are discussed.Comment: REVTeX 4, 4 pages, 5 figures; v2: completely rewritten, added finite-temperature results and proposals for ferromagnetic galvanic couplin

Simulation, Experiment, and Evolution: Understanding Nucleation in Protein S6 Folding

In this study, we explore nucleation and the transition state ensemble of the ribosomal protein S6 using a Monte Carlo Go model in conjunction with restraints from experiment. The results are analyzed in the context of extensive experimental and evolutionary data. The roles of individual residues in the folding nucleus are identified and the order of events in the S6 folding mechanism is explored in detail. Interpretation of our results agrees with, and extends the utility of, experiments that shift f-values by modulating denaturant concentration and presents strong evidence for the realism of the mechanistic details in our Monte Carlo Go model and the structural interpretation of experimental f-values. We also observe plasticity in the contacts of the hydrophobic core that support the specific nucleus. For S6, which binds to RNA and protein after folding, this plasticity may result from the conformational flexibility required to achieve biological function. These results present a theoretical and conceptual picture that is relevant in understanding the mechanism of nucleation in protein folding.Comment: PNAS in pres

Kneadings, Symbolic Dynamics and Painting Lorenz Chaos. A Tutorial

A new computational technique based on the symbolic description utilizing kneading invariants is proposed and verified for explorations of dynamical and parametric chaos in a few exemplary systems with the Lorenz attractor. The technique allows for uncovering the stunning complexity and universality of bi-parametric structures and detect their organizing centers - codimension-two T-points and separating saddles in the kneading-based scans of the iconic Lorenz equation from hydrodynamics, a normal model from mathematics, and a laser model from nonlinear optics.Comment: Journal of Bifurcations and Chaos, 201

Cauchy boundaries in linearized gravitational theory

We investigate the numerical stability of Cauchy evolution of linearized gravitational theory in a 3-dimensional bounded domain. Criteria of robust stability are proposed, developed into a testbed and used to study various evolution-boundary algorithms. We construct a standard explicit finite difference code which solves the unconstrained linearized Einstein equations in the 3+1 formulation and measure its stability properties under Dirichlet, Neumann and Sommerfeld boundary conditions. We demonstrate the robust stability of a specific evolution-boundary algorithm under random constraint violating initial data and random boundary data.Comment: 23 pages including 3 figures and 2 tables, revte