Craniometric Data Supports Demic Diffusion Model for the Spread of Agriculture into Europe

BACKGROUND:The spread of agriculture into Europe and the ancestry of the first European farmers have been subjects of debate and controversy among geneticists, archaeologists, linguists and anthropologists. Debates have centred on the extent to which the transition was associated with the active migration of people as opposed to the diffusion of cultural practices. Recent studies have shown that patterns of human cranial shape variation can be employed as a reliable proxy for the neutral genetic relationships of human populations. METHODOLOGY/PRINCIPAL FINDINGS:Here, we employ measurements of Mesolithic (hunter-gatherers) and Neolithic (farmers) crania from Southwest Asia and Europe to test several alternative population dispersal and hunter-farmer gene-flow models. We base our alternative hypothetical models on a null evolutionary model of isolation-by-geographic and temporal distance. Partial Mantel tests were used to assess the congruence between craniometric distance and each of the geographic model matrices, while controlling for temporal distance. Our results demonstrate that the craniometric data fit a model of continuous dispersal of people (and their genes) from Southwest Asia to Europe significantly better than a null model of cultural diffusion. CONCLUSIONS/SIGNIFICANCE:Therefore, this study does not support the assertion that farming in Europe solely involved the adoption of technologies and ideas from Southwest Asia by indigenous Mesolithic hunter-gatherers. Moreover, the results highlight the utility of craniometric data for assessing patterns of past population dispersal and gene flow

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 1; peer review: 1 approved, 1 approved with reservations]

Background: Access to sample-level metadata is important when selecting public metagenomic sequencing datasets for reuse in new biological analyses. The Standards, Precautions, and Advances in Ancient Metagenomics community (SPAAM, https://spaam-community.github.io) has previously published AncientMetagenomeDir, a collection of curated and standardised sample metadata tables for metagenomic and microbial genome datasets generated from ancient samples. However, while sample-level information is useful for identifying relevant samples for inclusion in new projects, Next Generation Sequencing (NGS) library construction and sequencing metadata are also essential for appropriately reprocessing ancient metagenomic data. Currently, recovering information for downloading and preparing such data is difficult when laboratory and bioinformatic metadata is heterogeneously recorded in prose-based publications. Methods: Through a series of community-based hackathon events, AncientMetagenomeDir was updated to provide standardised library-level metadata of existing and new ancient metagenomic samples. In tandem, the companion tool 'AMDirT' was developed to facilitate automated metadata curation and data validation, as well as rapid data filtering and downloading. Results: AncientMetagenomeDir was extended to include standardised metadata of over 5000 ancient metagenomic libraries. The companion tool 'AMDirT' provides both graphical- and command-line interface based access to such metadata for users from a wide range of computational backgrounds. We also report on errors with metadata reporting that appear to commonly occur during data upload and provide suggestions on how to improve the quality of data sharing by the community.Conclusions: Together, both standardised metadata and tooling will help towards easier incorporation and reuse of public ancient metagenomic datasets into future analyses.Bioarchaeolog

Establishing a high‐resolution stratigraphy in the Holocene marine sequence of the ancient Theodosian harbor of Istanbul with the help of dendrochronology

Salvage excavations in the Theodosian harbor (Yenikapi-Istanbul) have uncovered diverse archaeological objects including 36 shipwrecks and various Byzantine period wooden docks. The sequence of these docks provided a unique opportunity to obtain a high-resolution stratigraphy. The new approach is based on stratigraphic interpretation of deformation patterns created by the posts in soft sediments, combined with dendrochronological dating of the posts. Dendrochronology offers the potential to date the posts to within one calendar year of felling, a level of precision and accuracy rare in sedimentological analysis. The posts, most of them Quercus, were rammed during six different time periods. The first period is associated with posts cut in 528 AD. The second and third periods are dated by posts cut in 583 and 594 AD, respectively. The fourth-period dates within 8-10 years of 639 AD. The fifth period could be dated only roughly to between 690 and 770 AD. The last period produced a possible placement of after 778 AD. This new approach helps to establish a high-resolution stratigraphy. Furthermore, it provides information about sedimentation history and specific anthropogenic events

Investigating Late Neolithic ceramics in the northern Levant: the view from Shir

This paper presents a review of the ceramic investigations at the Late Neolithic site of Shir. Situated in Western Syria the site occupies a central position in the so-called ‘Levantine corridor’, which linked the southern Levant, Central Anatolia, and Upper Mesopotamia in the Neolithic. The ceramic sequence covers a period of several centuries between c. 7000 and 6450 cal BC. The pottery analysis combined bulk processing in the field and archaeometric work in the laboratory to construct a viable ceramic categorization. This paper discusses long-term ceramic trends that follow the first appearance of pottery in the northern Levant, including the development of pottery containers for storage.Archaeology of the Near Eas

Genomic insights into the formation of human populations in East Asia

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